Wall clock time and date at job start Tue Mar 31 2020 22:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00384 * 2 1 4 4 H 1.48505 * 109.47277 * 270.00086 * 3 2 1 5 5 H 1.48497 * 109.46991 * 30.00008 * 3 2 1 6 6 H 1.48502 * 109.47184 * 150.00120 * 3 2 1 7 7 C 1.38819 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99543 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00364 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00246 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47228 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46799 * 60.00679 * 11 10 9 13 13 O 1.42890 * 109.47438 * 300.00195 * 11 10 9 14 14 C 1.53005 * 109.46872 * 179.97438 * 11 10 9 15 15 N 1.46505 * 109.46904 * 185.00350 * 14 11 10 16 16 C 1.34773 * 120.00095 * 180.02562 * 15 14 11 17 17 O 1.21603 * 119.99887 * 359.97438 * 16 15 14 18 18 C 1.47521 * 120.00175 * 179.72702 * 16 15 14 19 19 C 1.36596 * 125.77041 * 179.97438 * 18 16 15 20 20 N 1.34816 * 106.83598 * 179.83903 * 19 18 16 21 21 C 1.46502 * 126.59239 * 180.15057 * 20 19 18 22 22 C 1.53001 * 109.47403 * 125.28214 * 21 20 19 23 23 H 1.08998 * 110.45169 * 52.39443 * 22 21 20 24 24 C 1.54509 * 110.51403 * 174.99717 * 22 21 20 25 25 C 1.54481 * 104.05906 * 118.64571 * 24 22 21 26 26 O 1.44418 * 104.80405 * 23.98131 * 25 24 22 27 27 C 1.44419 * 105.27590 * 319.48606 * 26 25 24 28 28 N 1.40210 * 106.81165 * 0.40834 * 20 19 18 29 29 N 1.28754 * 108.36727 * 359.73758 * 28 20 19 30 30 H 0.97007 * 119.99614 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99907 * 0.02562 * 9 7 2 32 32 H 1.09008 * 109.46917 * 60.00039 * 10 9 7 33 33 H 1.08994 * 109.47571 * 300.00241 * 10 9 7 34 34 H 0.96701 * 114.00110 * 300.00135 * 13 11 10 35 35 H 1.09003 * 109.46946 * 65.01109 * 14 11 10 36 36 H 1.08993 * 109.47679 * 305.00652 * 14 11 10 37 37 H 0.97000 * 119.99792 * 0.02562 * 15 14 11 38 38 H 1.08003 * 126.57937 * 359.97438 * 19 18 16 39 39 H 1.09001 * 109.46894 * 245.28796 * 21 20 19 40 40 H 1.09006 * 109.47251 * 5.28250 * 21 20 19 41 41 H 1.08998 * 110.51443 * 237.29621 * 24 22 21 42 42 H 1.09011 * 110.50714 * 0.02562 * 24 22 21 43 43 H 1.08999 * 110.36596 * 142.81406 * 25 24 22 44 44 H 1.08997 * 110.37241 * 265.14737 * 25 24 22 45 45 H 1.09004 * 110.37129 * 281.68055 * 27 26 25 46 46 H 1.09000 * 110.37280 * 159.34399 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1119 -2.4710 -0.0011 11 6 5.6162 -2.1915 -0.0024 12 1 5.8802 -1.6197 0.8873 13 8 5.9606 -1.4427 -1.1696 14 6 6.3811 -3.5166 -0.0017 15 7 7.8170 -3.2515 0.1175 16 6 8.6920 -4.2764 0.1388 17 8 8.2896 -5.4212 0.0595 18 6 10.1384 -4.0092 0.2528 19 6 11.1246 -4.9537 0.2857 20 7 12.2948 -4.2927 0.3920 21 6 13.6315 -4.8887 0.4594 22 6 14.5133 -4.2888 -0.6377 23 1 14.4915 -3.2000 -0.5910 24 6 15.9632 -4.8072 -0.5108 25 6 16.2126 -5.5535 -1.8403 26 8 15.2817 -4.9646 -2.7742 27 6 14.0582 -4.7830 -2.0287 28 7 11.9862 -2.9256 0.4317 29 7 10.7080 -2.7956 0.3475 30 1 -0.4850 0.8401 0.0004 31 1 3.8645 -0.3623 -0.0007 32 1 3.8482 -3.0428 -0.8909 33 1 3.8490 -3.0424 0.8891 34 1 5.7531 -1.8919 -2.0005 35 1 6.1861 -4.0492 -0.9326 36 1 6.0528 -4.1253 0.8407 37 1 8.1380 -2.3384 0.1812 38 1 10.9925 -6.0244 0.2341 39 1 14.0729 -4.6816 1.4343 40 1 13.5563 -5.9667 0.3162 41 1 16.6586 -3.9747 -0.4038 42 1 16.0517 -5.4914 0.3332 43 1 17.2376 -5.3972 -2.1765 44 1 16.0092 -6.6178 -1.7219 45 1 13.5244 -5.7292 -1.9393 46 1 13.4281 -4.0349 -2.5098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715607161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:32 Heat of formation + Delta-G solvation = -19.887625 kcal Electronic energy + Delta-G solvation = -28293.013571 eV Core-core repulsion = 24027.534144 eV Total energy + Delta-G solvation = -4265.479427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.64209 -40.18978 -39.56794 -37.70897 -35.88078 -34.52403 -34.09928 -32.90457 -31.56995 -31.28766 -30.15130 -29.34630 -27.22823 -25.82057 -23.89446 -23.57697 -22.61177 -22.10018 -21.52064 -21.32175 -20.32082 -18.65668 -17.69941 -17.39565 -16.86433 -16.59728 -16.31048 -16.19761 -16.02849 -15.83905 -15.42006 -15.01777 -14.89865 -14.53700 -14.36444 -13.93324 -13.73109 -13.70126 -13.41619 -13.20229 -12.73933 -12.60105 -12.52582 -12.35999 -12.16306 -11.97830 -11.93159 -11.69185 -11.38425 -11.27046 -10.83766 -10.79629 -10.78278 -10.49435 -10.40381 -10.13990 -9.74114 -9.70562 -9.53447 -9.15734 -8.90308 -7.23350 -5.75668 -3.11608 0.70991 1.40000 1.49712 2.95029 3.08436 3.19288 3.42885 3.48267 3.49842 3.54403 3.69499 3.88156 3.98009 4.11080 4.26847 4.35269 4.47994 4.49942 4.54763 4.57753 4.61655 4.63026 4.74024 4.86399 4.95696 5.06061 5.07848 5.17000 5.20590 5.30253 5.40200 5.48480 5.53410 5.70805 5.81899 5.85845 5.87524 6.06828 6.27358 6.44122 6.58053 7.28523 7.60549 7.82936 8.00733 8.01958 8.42935 9.22861 9.94904 10.14750 11.42337 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027348 B = 0.001674 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.613761 B =16721.642034 C =17076.046859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.131 3.869 11 C 0.084 3.916 12 H 0.105 0.895 13 O -0.555 6.555 14 C 0.091 3.909 15 N -0.705 5.705 16 C 0.602 3.398 17 O -0.542 6.542 18 C -0.098 4.098 19 C 0.093 3.907 20 N -0.364 5.364 21 C 0.131 3.869 22 C -0.139 4.139 23 H 0.105 0.895 24 C -0.147 4.147 25 C 0.042 3.958 26 O -0.370 6.370 27 C 0.049 3.951 28 N -0.060 5.060 29 N -0.200 5.200 30 H 0.260 0.740 31 H 0.367 0.633 32 H 0.032 0.968 33 H 0.038 0.962 34 H 0.376 0.624 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.413 0.587 38 H 0.205 0.795 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.074 -14.870 0.355 39.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.003 3.997 11 C 0.024 3.976 12 H 0.123 0.877 13 O -0.360 6.360 14 C -0.034 4.034 15 N -0.355 5.355 16 C 0.386 3.614 17 O -0.419 6.419 18 C -0.237 4.237 19 C -0.064 4.064 20 N -0.148 5.148 21 C 0.010 3.990 22 C -0.158 4.158 23 H 0.123 0.877 24 C -0.185 4.185 25 C -0.035 4.035 26 O -0.288 6.288 27 C -0.028 4.028 28 N -0.041 5.041 29 N -0.074 5.074 30 H 0.070 0.930 31 H 0.200 0.800 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.224 0.776 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.249 0.751 38 H 0.222 0.778 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 37.355 -13.881 0.625 39.855 hybrid contribution 0.160 0.055 -0.082 0.188 sum 37.515 -13.826 0.543 39.985 Atomic orbital electron populations 1.69709 1.05145 1.25896 1.57354 1.24666 0.95237 0.97318 1.01788 0.86500 0.79147 0.84678 0.77911 1.20995 1.21834 1.20223 1.19045 0.80534 0.94769 1.43433 0.89258 1.42558 1.03917 1.02040 1.91048 1.21167 0.88476 0.90313 0.99756 1.22452 0.94624 0.90773 0.89705 0.87704 1.86565 1.85981 1.47619 1.15843 1.22156 0.79121 0.98624 1.03457 1.45718 1.06787 1.10014 1.73030 1.16742 0.82984 0.85043 0.76649 1.90823 1.78850 1.20959 1.51264 1.21493 0.96116 0.89059 1.17031 1.23391 0.84445 1.00766 0.97781 1.50529 1.07317 1.07355 1.49643 1.22175 0.77492 0.98057 1.01326 1.22930 0.94763 1.03398 0.94712 0.87665 1.22964 0.95046 1.01406 0.99083 1.23473 0.94938 0.96917 0.88182 1.89196 1.22530 1.82632 1.34480 1.23506 0.88146 1.00691 0.90422 1.82010 1.07434 0.92292 1.22355 1.74691 1.00985 1.22171 1.09546 0.93041 0.79982 0.94988 0.94467 0.77646 0.90549 0.89933 0.75104 0.77827 0.87696 0.87349 0.89553 0.89759 0.88629 0.91929 0.92013 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.59 13.97 55.49 0.78 -28.82 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.89 22.70 27.73 -169.99 -4.71 17.98 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 7 C -0.25 -7.09 10.47 -15.06 -0.16 -7.25 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -17.86 5.30 -59.91 -0.32 -18.18 16 10 C 0.13 2.41 5.92 -4.04 -0.02 2.38 16 11 C 0.08 1.22 3.08 -26.73 -0.08 1.14 16 12 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 13 O -0.55 -8.31 13.03 -35.23 -0.46 -8.77 16 14 C 0.09 1.12 5.31 -4.04 -0.02 1.10 16 15 N -0.70 -8.51 5.50 -61.35 -0.34 -8.85 16 16 C 0.60 7.56 7.82 -12.48 -0.10 7.47 16 17 O -0.54 -7.99 16.86 5.27 0.09 -7.91 16 18 C -0.10 -1.05 6.99 -83.55 -0.58 -1.63 16 19 C 0.09 0.68 11.27 -16.83 -0.19 0.49 16 20 N -0.36 -2.38 3.58 -61.06 -0.22 -2.60 16 21 C 0.13 0.33 5.69 -4.04 -0.02 0.31 16 22 C -0.14 -0.50 3.24 -89.05 -0.29 -0.79 16 23 H 0.11 0.55 8.06 -51.93 -0.42 0.13 16 24 C -0.15 -0.29 6.74 -25.16 -0.17 -0.46 16 25 C 0.04 0.14 7.63 37.93 0.29 0.43 16 26 O -0.37 -2.66 11.65 -35.23 -0.41 -3.07 16 27 C 0.05 0.27 7.08 37.93 0.27 0.54 16 28 N -0.06 -0.61 13.58 60.35 0.82 0.21 16 29 N -0.20 -2.33 12.04 32.85 0.40 -1.94 16 30 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 31 H 0.37 8.77 5.41 -40.82 -0.22 8.55 16 32 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.38 4.61 9.05 45.56 0.41 5.02 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.41 4.87 8.16 -40.82 -0.33 4.54 16 38 H 0.21 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 40 H 0.11 -0.01 7.90 -51.93 -0.41 -0.42 16 41 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.08 -0.01 7.73 -51.92 -0.40 -0.41 16 43 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.06 0.26 7.74 -51.93 -0.40 -0.14 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 390.63 15.07 5.89 5.89 Total: -1.00 -37.50 390.63 -5.68 -43.19 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.02 Total: 9.06 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.18 Total: 3.81 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 1.12 Total: -60.18 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.78 Total: -19.75 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.71 Total: 17.98 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.50 -5.68 -43.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715607161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.300 kcal (2) G-P(sol) polarization free energy of solvation -37.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds