Wall clock time and date at job start Tue Mar 31 2020 22:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00384 * 2 1 4 4 H 1.48505 * 109.47277 * 270.00086 * 3 2 1 5 5 H 1.48497 * 109.46991 * 30.00008 * 3 2 1 6 6 H 1.48502 * 109.47184 * 150.00120 * 3 2 1 7 7 C 1.38819 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99543 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00364 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00246 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47228 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46799 * 60.00679 * 11 10 9 13 13 O 1.42890 * 109.47438 * 300.00195 * 11 10 9 14 14 C 1.53005 * 109.46872 * 179.97438 * 11 10 9 15 15 N 1.46505 * 109.46904 * 185.00350 * 14 11 10 16 16 C 1.34773 * 120.00095 * 180.02562 * 15 14 11 17 17 O 1.21603 * 119.99887 * 359.97438 * 16 15 14 18 18 C 1.47521 * 120.00175 * 179.72702 * 16 15 14 19 19 C 1.36596 * 125.77041 * 179.97438 * 18 16 15 20 20 N 1.34816 * 106.83598 * 179.83903 * 19 18 16 21 21 C 1.46502 * 126.59239 * 180.15057 * 20 19 18 22 22 C 1.53001 * 109.47403 * 125.28214 * 21 20 19 23 23 H 1.08998 * 110.45169 * 52.39443 * 22 21 20 24 24 C 1.54509 * 110.51403 * 174.99717 * 22 21 20 25 25 C 1.54481 * 104.05906 * 118.64571 * 24 22 21 26 26 O 1.44418 * 104.80405 * 23.98131 * 25 24 22 27 27 C 1.44419 * 105.27590 * 319.48606 * 26 25 24 28 28 N 1.40210 * 106.81165 * 0.40834 * 20 19 18 29 29 N 1.28754 * 108.36727 * 359.73758 * 28 20 19 30 30 H 0.97007 * 119.99614 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99907 * 0.02562 * 9 7 2 32 32 H 1.09008 * 109.46917 * 60.00039 * 10 9 7 33 33 H 1.08994 * 109.47571 * 300.00241 * 10 9 7 34 34 H 0.96701 * 114.00110 * 300.00135 * 13 11 10 35 35 H 1.09003 * 109.46946 * 65.01109 * 14 11 10 36 36 H 1.08993 * 109.47679 * 305.00652 * 14 11 10 37 37 H 0.97000 * 119.99792 * 0.02562 * 15 14 11 38 38 H 1.08003 * 126.57937 * 359.97438 * 19 18 16 39 39 H 1.09001 * 109.46894 * 245.28796 * 21 20 19 40 40 H 1.09006 * 109.47251 * 5.28250 * 21 20 19 41 41 H 1.08998 * 110.51443 * 237.29621 * 24 22 21 42 42 H 1.09011 * 110.50714 * 0.02562 * 24 22 21 43 43 H 1.08999 * 110.36596 * 142.81406 * 25 24 22 44 44 H 1.08997 * 110.37241 * 265.14737 * 25 24 22 45 45 H 1.09004 * 110.37129 * 281.68055 * 27 26 25 46 46 H 1.09000 * 110.37280 * 159.34399 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1119 -2.4710 -0.0011 11 6 5.6162 -2.1915 -0.0024 12 1 5.8802 -1.6197 0.8873 13 8 5.9606 -1.4427 -1.1696 14 6 6.3811 -3.5166 -0.0017 15 7 7.8170 -3.2515 0.1175 16 6 8.6920 -4.2764 0.1388 17 8 8.2896 -5.4212 0.0595 18 6 10.1384 -4.0092 0.2528 19 6 11.1246 -4.9537 0.2857 20 7 12.2948 -4.2927 0.3920 21 6 13.6315 -4.8887 0.4594 22 6 14.5133 -4.2888 -0.6377 23 1 14.4915 -3.2000 -0.5910 24 6 15.9632 -4.8072 -0.5108 25 6 16.2126 -5.5535 -1.8403 26 8 15.2817 -4.9646 -2.7742 27 6 14.0582 -4.7830 -2.0287 28 7 11.9862 -2.9256 0.4317 29 7 10.7080 -2.7956 0.3475 30 1 -0.4850 0.8401 0.0004 31 1 3.8645 -0.3623 -0.0007 32 1 3.8482 -3.0428 -0.8909 33 1 3.8490 -3.0424 0.8891 34 1 5.7531 -1.8919 -2.0005 35 1 6.1861 -4.0492 -0.9326 36 1 6.0528 -4.1253 0.8407 37 1 8.1380 -2.3384 0.1812 38 1 10.9925 -6.0244 0.2341 39 1 14.0729 -4.6816 1.4343 40 1 13.5563 -5.9667 0.3162 41 1 16.6586 -3.9747 -0.4038 42 1 16.0517 -5.4914 0.3332 43 1 17.2376 -5.3972 -2.1765 44 1 16.0092 -6.6178 -1.7219 45 1 13.5244 -5.7292 -1.9393 46 1 13.4281 -4.0349 -2.5098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715607161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:32 Heat of formation + Delta-G solvation = -53.242686 kcal Electronic energy + Delta-G solvation = -28294.459955 eV Core-core repulsion = 24027.534144 eV Total energy + Delta-G solvation = -4266.925811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.28405 -40.67961 -40.39949 -38.94728 -36.35397 -36.17732 -35.31613 -33.48227 -33.34551 -32.14188 -30.86239 -30.28580 -27.80389 -27.11879 -24.85738 -24.17883 -23.55461 -23.06436 -22.81583 -21.88448 -21.04242 -19.82075 -19.27918 -18.02355 -17.51442 -17.41465 -17.17685 -16.94242 -16.57628 -16.51699 -16.46289 -16.21186 -15.78178 -15.58900 -15.39552 -15.08113 -14.93304 -14.72370 -14.25417 -14.02528 -13.94410 -13.75338 -13.35857 -13.18417 -13.11944 -12.96206 -12.81239 -12.43638 -12.36396 -12.23854 -12.17078 -11.87307 -11.83243 -11.61434 -11.40879 -11.29874 -11.02513 -10.93629 -10.84281 -10.45323 -10.08316 -9.30511 -8.03254 -5.36322 0.12833 0.59388 1.04983 1.40328 1.42439 1.49791 2.04394 2.21275 2.48716 2.90051 3.13825 3.24271 3.27951 3.36707 3.46853 3.56050 3.72700 3.73706 3.91336 3.94561 4.00401 4.06919 4.10815 4.18703 4.21773 4.29469 4.38365 4.50225 4.62420 4.64841 4.66561 4.76065 4.81279 4.88543 4.94398 5.00586 5.11163 5.18777 5.30510 5.42366 5.74619 5.77460 6.20448 6.36730 6.77977 6.88023 7.08222 7.09211 7.84242 8.02837 9.17951 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027348 B = 0.001674 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.613761 B =16721.642034 C =17076.046859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.255 1.255 7 C -0.237 4.237 8 H 0.059 0.941 9 N -0.753 5.753 10 C 0.125 3.875 11 C 0.103 3.897 12 H 0.106 0.894 13 O -0.565 6.565 14 C 0.101 3.899 15 N -0.703 5.703 16 C 0.604 3.396 17 O -0.568 6.568 18 C -0.125 4.125 19 C 0.113 3.887 20 N -0.348 5.348 21 C 0.123 3.877 22 C -0.132 4.132 23 H 0.082 0.918 24 C -0.137 4.137 25 C 0.033 3.967 26 O -0.406 6.406 27 C 0.046 3.954 28 N -0.085 5.085 29 N -0.226 5.226 30 H 0.258 0.742 31 H 0.368 0.632 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.388 0.612 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.414 0.586 38 H 0.239 0.761 39 H 0.126 0.874 40 H 0.147 0.853 41 H 0.084 0.916 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 40.277 -16.097 1.106 43.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.784 3.216 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.180 1.180 7 C -0.368 4.368 8 H 0.077 0.923 9 N -0.399 5.399 10 C -0.002 4.002 11 C 0.043 3.957 12 H 0.123 0.877 13 O -0.372 6.372 14 C -0.023 4.023 15 N -0.353 5.353 16 C 0.389 3.611 17 O -0.447 6.447 18 C -0.265 4.265 19 C -0.045 4.045 20 N -0.132 5.132 21 C 0.004 3.996 22 C -0.152 4.152 23 H 0.101 0.899 24 C -0.175 4.175 25 C -0.043 4.043 26 O -0.325 6.325 27 C -0.031 4.031 28 N -0.065 5.065 29 N -0.100 5.100 30 H 0.067 0.933 31 H 0.202 0.798 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.237 0.763 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.251 0.749 38 H 0.256 0.744 39 H 0.144 0.856 40 H 0.164 0.836 41 H 0.102 0.898 42 H 0.133 0.867 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 40.642 -15.120 1.375 43.385 hybrid contribution -0.741 0.276 -0.361 0.870 sum 39.900 -14.844 1.015 42.584 Atomic orbital electron populations 1.69879 1.07063 1.26689 1.59616 1.25472 0.96080 1.01177 1.02578 0.85388 0.78442 0.79723 0.78046 1.20613 1.22208 1.18022 1.19063 0.82685 0.93574 1.41435 0.92254 1.42560 1.02353 1.04112 1.90925 1.21393 0.90705 0.88134 0.99987 1.22169 0.91985 0.91748 0.89786 0.87661 1.86543 1.85860 1.48261 1.16545 1.21954 0.79296 0.97206 1.03854 1.45668 1.06531 1.10189 1.72938 1.16942 0.83762 0.84549 0.75843 1.90800 1.79479 1.21734 1.52662 1.21432 0.95703 0.89908 1.19475 1.23874 0.83664 1.01691 0.95253 1.50780 1.08579 1.06215 1.47671 1.22667 0.75322 0.99790 1.01850 1.22812 0.96179 1.02164 0.94052 0.89909 1.22945 0.93484 1.01766 0.99355 1.23713 0.94491 0.97830 0.88229 1.89156 1.23686 1.83269 1.36388 1.23542 0.87714 1.00786 0.91074 1.81929 1.06877 0.94450 1.23268 1.74659 1.01726 1.23119 1.10483 0.93311 0.79817 0.94352 0.94113 0.76266 0.90062 0.89726 0.74906 0.74445 0.85572 0.83550 0.89761 0.86714 0.88261 0.90304 0.90467 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.58 13.97 21.65 0.30 -63.28 16 2 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.96 46.86 27.73 68.60 1.90 48.76 16 4 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.26 -11.50 6.52 99.48 0.65 -10.86 16 7 C -0.24 -13.63 10.47 84.04 0.88 -12.75 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 9 N -0.75 -35.18 5.30 -343.46 -1.82 -37.00 16 10 C 0.12 4.44 5.92 86.38 0.51 4.95 16 11 C 0.10 2.82 3.08 30.60 0.09 2.91 16 12 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 13 O -0.56 -15.90 13.03 -148.98 -1.94 -17.84 16 14 C 0.10 2.36 5.31 86.38 0.46 2.82 16 15 N -0.70 -16.21 5.50 -466.26 -2.56 -18.77 16 16 C 0.60 14.49 7.82 86.69 0.68 15.17 16 17 O -0.57 -15.97 16.86 -4.04 -0.07 -16.04 16 18 C -0.13 -2.53 6.99 40.82 0.29 -2.24 16 19 C 0.11 1.36 11.27 83.85 0.95 2.30 16 20 N -0.35 -3.71 3.58 -347.08 -1.24 -4.96 16 21 C 0.12 0.18 5.69 86.38 0.49 0.67 16 22 C -0.13 -0.70 3.24 -9.78 -0.03 -0.73 16 23 H 0.08 0.83 8.06 -2.39 -0.02 0.81 16 24 C -0.14 -0.16 6.74 31.61 0.21 0.05 16 25 C 0.03 0.16 7.63 72.49 0.55 0.72 16 26 O -0.41 -5.60 11.65 -148.98 -1.74 -7.34 16 27 C 0.05 0.45 7.08 72.48 0.51 0.96 16 28 N -0.08 -1.65 13.58 37.02 0.50 -1.14 16 29 N -0.23 -5.16 12.04 -50.00 -0.60 -5.76 16 30 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 31 H 0.37 16.91 5.41 -92.71 -0.50 16.41 16 32 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.39 8.81 9.05 -74.06 -0.67 8.14 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 37 H 0.41 9.42 8.16 -92.71 -0.76 8.66 16 38 H 0.24 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.15 -0.81 7.90 -2.38 -0.02 -0.82 16 41 H 0.08 0.16 8.14 -2.39 -0.02 0.15 16 42 H 0.11 -0.54 7.73 -2.38 -0.02 -0.56 16 43 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.08 0.48 7.74 -2.39 -0.02 0.46 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -83.35 390.63 -2.16 -85.51 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.95 Total: 26.22 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.06 Total: 11.64 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -5.42 Total: -130.91 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -3.75 Total: -41.22 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.90 Total: 48.76 kcal Total: -83.35 -2.16 -85.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715607161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.263 kcal (2) G-P(sol) polarization free energy of solvation -83.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds