Wall clock time and date at job start Tue Mar 31 2020 22:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47334 * 239.99519 * 3 2 1 5 5 H 1.48498 * 109.47199 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47004 * 119.99658 * 3 2 1 7 7 C 1.38813 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99905 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99905 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47144 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47594 * 59.99836 * 11 10 9 13 13 O 1.42899 * 109.46807 * 300.00001 * 11 10 9 14 14 C 1.53004 * 109.47077 * 180.02562 * 11 10 9 15 15 N 1.46500 * 109.46960 * 184.99734 * 14 11 10 16 16 C 1.34780 * 120.00066 * 179.97438 * 15 14 11 17 17 O 1.21594 * 119.99592 * 359.97438 * 16 15 14 18 18 C 1.47522 * 119.99915 * 180.02562 * 16 15 14 19 19 C 1.36595 * 125.76875 * 180.23849 * 18 16 15 20 20 N 1.34812 * 106.84032 * 180.13891 * 19 18 16 21 21 C 1.46502 * 126.59471 * 179.90509 * 20 19 18 22 22 C 1.53005 * 109.46915 * 124.70599 * 21 20 19 23 23 H 1.08997 * 110.81024 * 302.82768 * 22 21 20 24 24 C 1.54806 * 110.93853 * 179.17271 * 22 21 20 25 25 C 1.54099 * 104.19470 * 220.91054 * 24 22 21 26 26 O 1.43889 * 107.37252 * 358.10337 * 25 24 22 27 27 C 1.44388 * 106.89814 * 26.27302 * 26 25 24 28 28 N 1.40208 * 106.80777 * 359.63871 * 20 19 18 29 29 N 1.28754 * 108.37192 * 0.23141 * 28 20 19 30 30 H 0.97004 * 120.00061 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00047 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.46914 * 60.00467 * 10 9 7 33 33 H 1.09004 * 109.47223 * 300.00335 * 10 9 7 34 34 H 0.96701 * 114.00586 * 299.99884 * 13 11 10 35 35 H 1.08995 * 109.47127 * 64.99876 * 14 11 10 36 36 H 1.08997 * 109.46936 * 304.99560 * 14 11 10 37 37 H 0.97001 * 120.00041 * 0.02562 * 15 14 11 38 38 H 1.08003 * 126.58103 * 0.02562 * 19 18 16 39 39 H 1.08995 * 109.46934 * 4.71151 * 21 20 19 40 40 H 1.08997 * 109.47047 * 244.70376 * 21 20 19 41 41 H 1.09002 * 110.48575 * 339.59172 * 24 22 21 42 42 H 1.09004 * 110.48517 * 102.10161 * 24 22 21 43 43 H 1.09001 * 109.87936 * 117.39322 * 25 24 22 44 44 H 1.08993 * 109.88056 * 238.39954 * 25 24 22 45 45 H 1.09002 * 110.61854 * 201.57804 * 27 26 25 46 46 H 1.09000 * 110.62045 * 78.73713 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.4373 -4.7618 -0.8903 13 8 0.2417 -4.7442 1.1664 14 6 1.8287 -6.1447 0.0005 15 7 0.8813 -7.2556 -0.1204 16 6 1.3314 -8.5259 -0.1420 17 8 2.5239 -8.7497 -0.0615 18 6 0.3774 -9.6444 -0.2643 19 6 0.7019 -10.9710 -0.2933 20 7 -0.4543 -11.6532 -0.4169 21 6 -0.6059 -13.1084 -0.4924 22 6 -1.5688 -13.5782 0.5999 23 1 -1.2165 -13.2716 1.5848 24 6 -1.7701 -15.1118 0.5379 25 6 -3.2776 -15.3057 0.7917 26 8 -3.8456 -14.0037 1.0211 27 6 -3.0028 -13.0517 0.3369 28 7 -1.4842 -10.7025 -0.4530 29 7 -0.9583 -9.5309 -0.3610 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6845 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.7335 -4.7897 1.9978 35 1 2.3858 -6.2422 0.9323 36 1 2.5214 -6.1647 -0.8408 37 1 -0.0699 -7.0769 -0.1857 38 1 1.6944 -11.3924 -0.2313 39 1 0.3650 -13.5827 -0.3493 40 1 -1.0036 -13.3821 -1.4696 41 1 -1.4967 -15.4930 -0.4460 42 1 -1.1841 -15.6051 1.3134 43 1 -3.7447 -15.7623 -0.0808 44 1 -3.4279 -15.9386 1.6662 45 1 -3.1290 -12.0546 0.7588 46 1 -3.2194 -13.0454 -0.7313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715607162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:35 Heat of formation + Delta-G solvation = -22.763471 kcal Electronic energy + Delta-G solvation = -28178.653885 eV Core-core repulsion = 23913.049752 eV Total energy + Delta-G solvation = -4265.604133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.59521 -40.04623 -39.49016 -37.54969 -35.83681 -34.40084 -33.94669 -32.85474 -31.49090 -31.15706 -30.06215 -28.96608 -27.16559 -25.62699 -23.75865 -23.39305 -22.56822 -22.24358 -21.46622 -21.34896 -20.37465 -18.59510 -17.29821 -17.11587 -16.83708 -16.53671 -16.29749 -16.08897 -15.83285 -15.62667 -15.35815 -14.96896 -14.69257 -14.53727 -14.42584 -13.92170 -13.75416 -13.56367 -13.34524 -12.97113 -12.64897 -12.61472 -12.35041 -12.29667 -12.08600 -11.89653 -11.81736 -11.51843 -11.39467 -10.93223 -10.79249 -10.78180 -10.58983 -10.33301 -10.24207 -10.17434 -9.77829 -9.65836 -9.47557 -9.08489 -8.86915 -6.90705 -5.72760 -3.02572 0.74850 1.44859 1.53317 3.02398 3.13996 3.25562 3.46442 3.50528 3.51966 3.64056 3.80482 3.84843 3.95506 4.29450 4.31679 4.40386 4.43267 4.56857 4.60471 4.63429 4.75007 4.78063 4.90267 4.93434 5.01030 5.13648 5.23837 5.28687 5.33237 5.40797 5.47350 5.58475 5.64982 5.81125 5.90198 5.98675 6.22772 6.28393 6.37343 6.53659 6.71177 7.35345 7.65952 7.70687 8.00019 8.08980 8.45301 9.56828 10.13955 10.49867 11.49395 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.001576 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.713603 B =17758.779092 C =18459.683374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.088 3.912 12 H 0.105 0.895 13 O -0.550 6.550 14 C 0.090 3.910 15 N -0.703 5.703 16 C 0.602 3.398 17 O -0.544 6.544 18 C -0.098 4.098 19 C 0.095 3.905 20 N -0.365 5.365 21 C 0.132 3.868 22 C -0.139 4.139 23 H 0.096 0.904 24 C -0.147 4.147 25 C 0.045 3.955 26 O -0.376 6.376 27 C 0.057 3.943 28 N -0.063 5.063 29 N -0.198 5.198 30 H 0.256 0.744 31 H 0.389 0.611 32 H 0.023 0.977 33 H 0.029 0.971 34 H 0.373 0.627 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.414 0.586 38 H 0.205 0.795 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 -36.618 -0.458 36.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.370 5.370 10 C -0.002 4.002 11 C 0.028 3.972 12 H 0.123 0.877 13 O -0.355 6.355 14 C -0.034 4.034 15 N -0.354 5.354 16 C 0.385 3.615 17 O -0.421 6.421 18 C -0.237 4.237 19 C -0.062 4.062 20 N -0.150 5.150 21 C 0.011 3.989 22 C -0.159 4.159 23 H 0.114 0.886 24 C -0.185 4.185 25 C -0.032 4.032 26 O -0.295 6.295 27 C -0.020 4.020 28 N -0.043 5.043 29 N -0.072 5.072 30 H 0.066 0.934 31 H 0.224 0.776 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.220 0.780 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.250 0.750 38 H 0.222 0.778 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.122 0.878 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.724 -36.351 -0.843 36.463 hybrid contribution 1.557 0.544 0.246 1.668 sum -1.167 -35.807 -0.597 35.831 Atomic orbital electron populations 1.69672 1.05093 1.25769 1.57189 1.24759 0.95518 0.97695 1.02834 0.86257 0.78498 0.83514 0.77819 1.21272 1.21663 1.21269 1.19174 0.90958 0.84135 1.43355 0.91274 1.42221 1.06148 0.99317 1.89346 1.21191 0.93490 0.86626 0.98864 1.22399 0.93305 0.91593 0.89855 0.87682 1.86601 1.36886 1.96384 1.15628 1.22185 0.92244 0.85791 1.03187 1.45734 1.12022 1.04845 1.72794 1.16745 0.86280 0.81754 0.76675 1.90812 1.15264 1.84592 1.51461 1.21507 0.91229 0.93991 1.16970 1.23385 0.93113 0.92096 0.97612 1.50514 1.05865 1.08885 1.49698 1.22045 1.02528 0.73279 1.01059 1.23084 0.96932 0.96223 0.99619 0.88559 1.22943 0.97716 0.94225 1.03640 1.23178 0.91680 0.86593 1.01726 1.88972 1.50563 1.15923 1.74000 1.23681 0.86382 0.94143 0.97790 1.81975 1.09622 0.90150 1.22574 1.74697 1.07067 1.16042 1.09352 0.93432 0.77595 0.95926 0.95373 0.77984 0.90749 0.90131 0.75023 0.77817 0.87028 0.87884 0.89951 0.89665 0.92071 0.89608 0.87756 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.25 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.53 5.49 -59.91 -0.33 -18.86 16 10 C 0.13 2.47 5.92 -4.04 -0.02 2.45 16 11 C 0.09 1.39 3.09 -26.73 -0.08 1.31 16 12 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 13 O -0.55 -9.09 13.03 -35.23 -0.46 -9.55 16 14 C 0.09 1.20 5.31 -4.04 -0.02 1.17 16 15 N -0.70 -9.03 5.50 -61.35 -0.34 -9.37 16 16 C 0.60 7.90 7.82 -12.47 -0.10 7.80 16 17 O -0.54 -8.29 16.86 5.28 0.09 -8.20 16 18 C -0.10 -1.09 6.99 -83.55 -0.58 -1.68 16 19 C 0.09 0.73 11.27 -16.84 -0.19 0.54 16 20 N -0.36 -2.51 3.69 -61.06 -0.23 -2.74 16 21 C 0.13 0.37 5.93 -4.04 -0.02 0.35 16 22 C -0.14 -0.55 3.37 -88.61 -0.30 -0.85 16 23 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 24 C -0.15 -0.33 6.60 -25.21 -0.17 -0.49 16 25 C 0.05 0.20 7.70 37.73 0.29 0.49 16 26 O -0.38 -3.13 11.54 -35.23 -0.41 -3.54 16 27 C 0.06 0.38 6.09 38.21 0.23 0.62 16 28 N -0.06 -0.65 11.79 60.35 0.71 0.06 16 29 N -0.20 -2.39 12.04 32.85 0.40 -2.00 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.39 10.70 7.54 -40.82 -0.31 10.39 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.37 5.14 9.05 45.56 0.41 5.55 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.41 5.24 8.16 -40.82 -0.33 4.91 16 38 H 0.21 0.92 8.06 -52.48 -0.42 0.49 16 39 H 0.11 -0.01 8.08 -51.93 -0.42 -0.43 16 40 H 0.10 0.18 8.10 -51.93 -0.42 -0.25 16 41 H 0.08 0.04 7.86 -51.93 -0.41 -0.36 16 42 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.89 7.30 -51.93 -0.38 0.51 16 46 H 0.07 0.41 8.02 -51.93 -0.42 0.00 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -36.66 391.04 -6.23 -42.88 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.05 Total: 11.54 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.21 Total: 4.17 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.94 Total: -60.79 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.78 Total: -21.29 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.66 -6.23 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715607162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.121 kcal (2) G-P(sol) polarization free energy of solvation -36.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds