Wall clock time and date at job start Tue Mar 31 2020 22:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47334 * 239.99519 * 3 2 1 5 5 H 1.48498 * 109.47199 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47004 * 119.99658 * 3 2 1 7 7 C 1.38813 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99905 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99905 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47144 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47594 * 59.99836 * 11 10 9 13 13 O 1.42899 * 109.46807 * 300.00001 * 11 10 9 14 14 C 1.53004 * 109.47077 * 180.02562 * 11 10 9 15 15 N 1.46500 * 109.46960 * 184.99734 * 14 11 10 16 16 C 1.34780 * 120.00066 * 179.97438 * 15 14 11 17 17 O 1.21594 * 119.99592 * 359.97438 * 16 15 14 18 18 C 1.47522 * 119.99915 * 180.02562 * 16 15 14 19 19 C 1.36595 * 125.76875 * 180.23849 * 18 16 15 20 20 N 1.34812 * 106.84032 * 180.13891 * 19 18 16 21 21 C 1.46502 * 126.59471 * 179.90509 * 20 19 18 22 22 C 1.53005 * 109.46915 * 124.70599 * 21 20 19 23 23 H 1.08997 * 110.81024 * 302.82768 * 22 21 20 24 24 C 1.54806 * 110.93853 * 179.17271 * 22 21 20 25 25 C 1.54099 * 104.19470 * 220.91054 * 24 22 21 26 26 O 1.43889 * 107.37252 * 358.10337 * 25 24 22 27 27 C 1.44388 * 106.89814 * 26.27302 * 26 25 24 28 28 N 1.40208 * 106.80777 * 359.63871 * 20 19 18 29 29 N 1.28754 * 108.37192 * 0.23141 * 28 20 19 30 30 H 0.97004 * 120.00061 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00047 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.46914 * 60.00467 * 10 9 7 33 33 H 1.09004 * 109.47223 * 300.00335 * 10 9 7 34 34 H 0.96701 * 114.00586 * 299.99884 * 13 11 10 35 35 H 1.08995 * 109.47127 * 64.99876 * 14 11 10 36 36 H 1.08997 * 109.46936 * 304.99560 * 14 11 10 37 37 H 0.97001 * 120.00041 * 0.02562 * 15 14 11 38 38 H 1.08003 * 126.58103 * 0.02562 * 19 18 16 39 39 H 1.08995 * 109.46934 * 4.71151 * 21 20 19 40 40 H 1.08997 * 109.47047 * 244.70376 * 21 20 19 41 41 H 1.09002 * 110.48575 * 339.59172 * 24 22 21 42 42 H 1.09004 * 110.48517 * 102.10161 * 24 22 21 43 43 H 1.09001 * 109.87936 * 117.39322 * 25 24 22 44 44 H 1.08993 * 109.88056 * 238.39954 * 25 24 22 45 45 H 1.09002 * 110.61854 * 201.57804 * 27 26 25 46 46 H 1.09000 * 110.62045 * 78.73713 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.4373 -4.7618 -0.8903 13 8 0.2417 -4.7442 1.1664 14 6 1.8287 -6.1447 0.0005 15 7 0.8813 -7.2556 -0.1204 16 6 1.3314 -8.5259 -0.1420 17 8 2.5239 -8.7497 -0.0615 18 6 0.3774 -9.6444 -0.2643 19 6 0.7019 -10.9710 -0.2933 20 7 -0.4543 -11.6532 -0.4169 21 6 -0.6059 -13.1084 -0.4924 22 6 -1.5688 -13.5782 0.5999 23 1 -1.2165 -13.2716 1.5848 24 6 -1.7701 -15.1118 0.5379 25 6 -3.2776 -15.3057 0.7917 26 8 -3.8456 -14.0037 1.0211 27 6 -3.0028 -13.0517 0.3369 28 7 -1.4842 -10.7025 -0.4530 29 7 -0.9583 -9.5309 -0.3610 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6845 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 0.7335 -4.7897 1.9978 35 1 2.3858 -6.2422 0.9323 36 1 2.5214 -6.1647 -0.8408 37 1 -0.0699 -7.0769 -0.1857 38 1 1.6944 -11.3924 -0.2313 39 1 0.3650 -13.5827 -0.3493 40 1 -1.0036 -13.3821 -1.4696 41 1 -1.4967 -15.4930 -0.4460 42 1 -1.1841 -15.6051 1.3134 43 1 -3.7447 -15.7623 -0.0808 44 1 -3.4279 -15.9386 1.6662 45 1 -3.1290 -12.0546 0.7588 46 1 -3.2194 -13.0454 -0.7313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715607162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:35 Heat of formation + Delta-G solvation = -55.036186 kcal Electronic energy + Delta-G solvation = -28180.053335 eV Core-core repulsion = 23913.049752 eV Total energy + Delta-G solvation = -4267.003583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.27384 -40.65136 -40.34280 -38.88036 -36.35243 -36.04999 -35.29829 -33.36511 -33.17504 -32.11572 -30.71832 -30.15107 -27.70914 -27.10358 -25.05272 -23.92368 -23.78944 -22.91733 -22.72501 -21.90132 -21.19668 -19.45614 -19.09082 -17.95729 -17.63120 -17.30365 -17.19689 -16.91520 -16.59740 -16.48929 -16.38275 -16.10286 -15.68502 -15.50970 -15.41381 -15.09191 -14.91341 -14.62595 -14.19061 -14.09317 -13.86477 -13.68420 -13.22715 -13.21371 -12.93961 -12.74758 -12.70138 -12.49142 -12.37460 -12.19090 -11.97385 -11.94656 -11.78564 -11.73849 -11.39418 -11.32017 -10.96933 -10.88226 -10.69892 -10.44151 -10.07539 -8.99302 -7.92779 -5.22585 0.13681 0.59988 1.06097 1.48555 1.52043 1.58248 2.05915 2.21880 2.57772 2.88131 3.16483 3.32306 3.38560 3.47089 3.50435 3.61123 3.62328 3.80133 3.93469 3.97325 4.06207 4.10467 4.21205 4.21718 4.33426 4.40559 4.42134 4.50332 4.64174 4.66173 4.75466 4.80920 4.85284 4.88297 4.95620 4.99227 5.14461 5.22396 5.31587 5.43595 5.49575 5.88139 6.27611 6.37354 6.81847 6.89042 7.09456 7.34869 8.10993 8.33822 9.30241 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.001576 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.713603 B =17758.779092 C =18459.683374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.123 3.877 11 C 0.105 3.895 12 H 0.097 0.903 13 O -0.565 6.565 14 C 0.103 3.897 15 N -0.704 5.704 16 C 0.604 3.396 17 O -0.568 6.568 18 C -0.127 4.127 19 C 0.117 3.883 20 N -0.350 5.350 21 C 0.124 3.876 22 C -0.132 4.132 23 H 0.085 0.915 24 C -0.135 4.135 25 C 0.033 3.967 26 O -0.412 6.412 27 C 0.052 3.948 28 N -0.085 5.085 29 N -0.228 5.228 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.385 0.615 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.414 0.586 38 H 0.242 0.758 39 H 0.155 0.845 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -39.171 -0.797 39.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.096 0.904 9 N -0.384 5.384 10 C -0.004 4.004 11 C 0.045 3.955 12 H 0.115 0.885 13 O -0.371 6.371 14 C -0.021 4.021 15 N -0.354 5.354 16 C 0.389 3.611 17 O -0.447 6.447 18 C -0.267 4.267 19 C -0.041 4.041 20 N -0.135 5.135 21 C 0.005 3.995 22 C -0.151 4.151 23 H 0.104 0.896 24 C -0.173 4.173 25 C -0.043 4.043 26 O -0.331 6.331 27 C -0.025 4.025 28 N -0.065 5.065 29 N -0.101 5.101 30 H 0.059 0.941 31 H 0.208 0.792 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.250 0.750 38 H 0.258 0.742 39 H 0.173 0.827 40 H 0.139 0.861 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.568 -38.964 -1.180 38.986 hybrid contribution 0.863 1.153 0.373 1.488 sum 0.295 -37.811 -0.807 37.820 Atomic orbital electron populations 1.69844 1.06731 1.26123 1.59201 1.25619 0.96379 1.01270 1.03580 0.85175 0.77136 0.78959 0.78248 1.20275 1.22262 1.20277 1.19638 0.91583 0.85326 1.41629 0.90396 1.42417 1.05764 1.00782 1.89391 1.21398 0.94112 0.85542 0.99356 1.22129 0.92318 0.91559 0.89467 0.88496 1.86580 1.37683 1.96421 1.16440 1.21952 0.91819 0.84592 1.03732 1.45703 1.11888 1.04939 1.72856 1.16946 0.86307 0.81979 0.75824 1.90787 1.16190 1.84941 1.52776 1.21445 0.90861 0.94826 1.19573 1.23883 0.94411 0.90856 0.94931 1.50796 1.04918 1.10023 1.47728 1.22559 1.04661 0.70818 1.01457 1.22988 0.95123 0.97466 0.99538 0.89624 1.22926 0.95965 0.92661 1.05711 1.23436 0.93460 0.85053 1.02381 1.88929 1.51927 1.17759 1.74525 1.23666 0.88420 0.92990 0.97415 1.81916 1.10841 0.90424 1.23316 1.74672 1.07776 1.17248 1.10422 0.94057 0.79181 0.94823 0.94586 0.76639 0.90057 0.89722 0.75012 0.74226 0.82705 0.86084 0.87360 0.88144 0.91328 0.89159 0.90508 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 3 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -38.02 5.49 -343.46 -1.89 -39.91 16 10 C 0.12 4.72 5.92 86.38 0.51 5.23 16 11 C 0.11 3.27 3.09 30.60 0.09 3.37 16 12 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 13 O -0.56 -18.63 13.03 -148.98 -1.94 -20.57 16 14 C 0.10 2.65 5.31 86.38 0.46 3.11 16 15 N -0.70 -17.83 5.50 -466.28 -2.56 -20.40 16 16 C 0.60 15.41 7.82 86.69 0.68 16.09 16 17 O -0.57 -16.56 16.86 -4.01 -0.07 -16.63 16 18 C -0.13 -2.74 6.99 40.82 0.29 -2.45 16 19 C 0.12 1.50 11.27 83.85 0.95 2.45 16 20 N -0.35 -4.04 3.69 -347.10 -1.28 -5.33 16 21 C 0.12 0.25 5.93 86.38 0.51 0.76 16 22 C -0.13 -0.77 3.37 -9.49 -0.03 -0.80 16 23 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 24 C -0.13 -0.18 6.60 31.58 0.21 0.03 16 25 C 0.03 0.25 7.70 72.35 0.56 0.81 16 26 O -0.41 -6.98 11.54 -148.98 -1.72 -8.70 16 27 C 0.05 0.70 6.09 72.67 0.44 1.14 16 28 N -0.08 -1.73 11.79 37.02 0.44 -1.29 16 29 N -0.23 -5.55 12.04 -50.00 -0.60 -6.15 16 30 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 31 H 0.38 21.09 7.54 -92.71 -0.70 20.39 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.38 10.43 9.05 -74.06 -0.67 9.76 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.41 10.61 8.16 -92.71 -0.76 9.85 16 38 H 0.24 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.16 -0.92 8.08 -2.39 -0.02 -0.94 16 40 H 0.12 -0.08 8.10 -2.39 -0.02 -0.10 16 41 H 0.11 -0.38 7.86 -2.39 -0.02 -0.40 16 42 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.08 1.43 7.30 -2.39 -0.02 1.41 16 46 H 0.07 0.84 8.02 -2.39 -0.02 0.82 16 Total: -1.00 -81.55 391.04 -2.44 -83.99 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -1.09 Total: 34.31 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 5.97 Total: 12.46 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -5.62 Total: -133.52 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -3.73 Total: -45.90 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -81.55 -2.44 -83.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715607162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.951 kcal (2) G-P(sol) polarization free energy of solvation -81.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds