Wall clock time and date at job start Tue Mar 31 2020 22:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99955 * 2 1 4 4 H 1.48505 * 109.46791 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47056 * 120.00420 * 3 2 1 6 6 H 1.48500 * 109.47291 * 240.00758 * 3 2 1 7 7 C 1.38811 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99914 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00289 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47512 * 183.59472 * 10 9 7 12 12 H 1.08999 * 109.87214 * 316.34581 * 11 10 9 13 13 C 1.54323 * 109.88251 * 195.33212 * 11 10 9 14 14 C 1.55154 * 102.94206 * 218.38620 * 13 11 10 15 15 C 1.54907 * 101.58258 * 35.50136 * 14 13 11 16 16 N 1.47015 * 109.88371 * 77.52283 * 11 10 9 17 17 C 1.34781 * 125.64837 * 298.33692 * 16 11 10 18 18 O 1.21636 * 120.00035 * 1.88077 * 17 16 11 19 19 C 1.47130 * 120.00105 * 181.88638 * 17 16 11 20 20 C 1.36623 * 126.97466 * 351.72763 * 19 17 16 21 21 N 1.34706 * 108.68362 * 179.97438 * 20 19 17 22 22 H 0.96993 * 124.72400 * 179.97438 * 21 20 19 23 23 C 1.36218 * 110.54726 * 0.02562 * 21 20 19 24 24 C 1.35747 * 108.67785 * 359.74714 * 23 21 20 25 25 C 1.48290 * 126.97975 * 180.23275 * 24 23 21 26 26 C 1.39385 * 120.12701 * 129.90084 * 25 24 23 27 27 C 1.38007 * 119.87214 * 179.67458 * 26 25 24 28 28 C 1.38326 * 120.12304 * 0.62231 * 27 26 25 29 29 C 1.38338 * 120.25442 * 359.67777 * 28 27 26 30 30 C 1.37992 * 120.12734 * 359.97438 * 29 28 27 31 31 H 0.96998 * 119.99933 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99814 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47103 * 303.59483 * 10 9 7 34 34 H 1.09002 * 109.46876 * 63.59321 * 10 9 7 35 35 H 1.09005 * 110.72249 * 336.75055 * 13 11 10 36 36 H 1.09001 * 110.72414 * 100.02690 * 13 11 10 37 37 H 1.08998 * 111.00647 * 153.57611 * 14 13 11 38 38 H 1.09002 * 111.00533 * 277.42754 * 14 13 11 39 39 H 1.09002 * 110.37035 * 81.82815 * 15 14 13 40 40 H 1.08995 * 110.37370 * 204.14827 * 15 14 13 41 41 H 1.08002 * 125.65580 * 359.97438 * 20 19 17 42 42 H 1.07996 * 125.65755 * 179.97438 * 23 21 20 43 43 H 1.08005 * 120.06718 * 359.97438 * 26 25 24 44 44 H 1.07996 * 119.93833 * 180.33850 * 27 26 25 45 45 H 1.08002 * 119.87804 * 179.69885 * 28 27 26 46 46 H 1.08000 * 119.93233 * 180.02562 * 29 28 27 47 47 H 1.08004 * 120.06449 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0664 -4.8183 -0.0910 12 1 0.2245 -4.6395 0.5779 13 6 1.7684 -6.1387 0.2902 14 6 1.1523 -7.1591 -0.7029 15 6 0.9815 -6.2912 -1.9746 16 7 0.5887 -4.9614 -1.4740 17 6 -0.0955 -4.0310 -2.1689 18 8 -0.3368 -2.9507 -1.6647 19 6 -0.5506 -4.3222 -3.5374 20 6 -0.2296 -5.4125 -4.2957 21 7 -0.8484 -5.3066 -5.4875 22 1 -0.7804 -5.9557 -6.2049 23 6 -1.5821 -4.1603 -5.5450 24 6 -1.4495 -3.4996 -4.3666 25 6 -2.0788 -2.2105 -3.9910 26 6 -2.7649 -2.0925 -2.7835 27 6 -3.3428 -0.8884 -2.4360 28 6 -3.2531 0.1965 -3.2895 29 6 -2.5788 0.0835 -4.4920 30 6 -1.9909 -1.1136 -4.8466 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.7322 -3.6871 -0.8566 34 1 2.6356 -3.7429 0.9199 35 1 2.8456 -6.0593 0.1429 36 1 1.5382 -6.4148 1.3192 37 1 1.8355 -7.9886 -0.8849 38 1 0.1885 -7.5204 -0.3441 39 1 1.9230 -6.2282 -2.5202 40 1 0.1994 -6.7026 -2.6126 41 1 0.4136 -6.2245 -3.9901 42 1 -2.1743 -3.8335 -6.3869 43 1 -2.8400 -2.9404 -2.1187 44 1 -3.8700 -0.7943 -1.4982 45 1 -3.7111 1.1356 -3.0158 46 1 -2.5116 0.9340 -5.1542 47 1 -1.4650 -1.2008 -5.7859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716790047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:04 Heat of formation + Delta-G solvation = 86.687908 kcal Electronic energy + Delta-G solvation = -30381.609791 eV Core-core repulsion = 26531.601089 eV Total energy + Delta-G solvation = -3850.008702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09648 -39.29787 -38.18832 -36.58622 -34.11475 -32.11753 -31.73690 -31.03939 -30.27149 -29.48479 -28.60553 -27.90831 -25.00046 -23.57230 -22.48664 -22.17661 -21.85558 -21.21555 -20.41096 -19.39137 -18.75878 -17.46424 -16.79691 -16.18080 -16.01701 -15.67817 -14.68420 -14.60030 -14.49220 -14.15134 -14.01723 -13.59965 -13.46797 -13.38561 -13.02597 -12.79024 -12.77619 -12.73059 -12.55415 -12.29583 -12.15171 -11.70595 -11.48527 -11.36717 -11.03214 -10.84807 -10.61226 -10.59777 -10.49594 -10.45207 -10.38369 -9.81739 -9.38444 -8.95058 -8.70182 -8.51627 -8.28244 -8.20085 -7.91831 -7.61874 -6.42200 -5.32042 -2.58231 1.76293 2.07037 2.12676 2.77370 3.22460 3.58096 3.63912 3.67501 3.68622 4.18128 4.48356 4.66572 4.74010 4.87777 4.92104 5.06729 5.14416 5.21574 5.44408 5.46614 5.48988 5.56716 5.61066 5.65305 5.73833 5.80144 5.85113 5.93456 5.95432 6.02205 6.09084 6.10470 6.22798 6.29202 6.34581 6.58561 6.61587 6.68187 6.75671 6.83183 6.94314 6.98215 7.12778 7.19500 7.21143 7.29635 7.49724 7.66226 8.00764 8.23294 8.81710 9.17457 9.97941 10.64518 11.05405 11.88073 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007238 B = 0.006563 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3867.562312 B = 4265.470762 C = 7310.482882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.006 4.006 3 Si 0.891 3.109 4 H -0.293 1.293 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.057 0.943 9 N -0.716 5.716 10 C 0.147 3.853 11 C 0.134 3.866 12 H 0.072 0.928 13 C -0.124 4.124 14 C -0.133 4.133 15 C 0.090 3.910 16 N -0.617 5.617 17 C 0.572 3.428 18 O -0.448 6.448 19 C -0.188 4.188 20 C 0.012 3.988 21 N -0.552 5.552 22 H 0.414 0.586 23 C -0.015 4.015 24 C -0.071 4.071 25 C -0.010 4.010 26 C -0.060 4.060 27 C -0.104 4.104 28 C -0.118 4.118 29 C -0.128 4.128 30 C -0.114 4.114 31 H 0.247 0.753 32 H 0.400 0.600 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.182 0.818 42 H 0.168 0.832 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 -17.249 -11.478 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.203 4.203 3 Si 0.724 3.276 4 H -0.220 1.220 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.075 0.925 9 N -0.367 5.367 10 C 0.018 3.982 11 C 0.031 3.969 12 H 0.090 0.910 13 C -0.163 4.163 14 C -0.171 4.171 15 C -0.033 4.033 16 N -0.355 5.355 17 C 0.359 3.641 18 O -0.317 6.317 19 C -0.199 4.199 20 C -0.122 4.122 21 N -0.147 5.147 22 H 0.250 0.750 23 C -0.144 4.144 24 C -0.077 4.077 25 C -0.010 4.010 26 C -0.078 4.078 27 C -0.122 4.122 28 C -0.136 4.136 29 C -0.146 4.146 30 C -0.132 4.132 31 H 0.057 0.943 32 H 0.242 0.758 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.199 0.801 42 H 0.186 0.814 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.846 -16.479 -11.351 20.588 hybrid contribution 0.702 0.686 -0.397 1.059 sum -4.144 -15.793 -11.748 20.115 Atomic orbital electron populations 1.69717 1.04464 1.24354 1.56972 1.24618 0.95311 0.96702 1.03684 0.86515 0.78609 0.85100 0.77404 1.21961 1.21802 1.21873 1.19031 0.90293 0.84813 1.42800 0.92505 1.42749 1.07048 0.98641 1.88285 1.20949 0.93160 0.86865 0.97228 1.21801 0.97165 0.95159 0.82810 0.90981 1.22632 1.00471 0.93716 0.99460 1.22771 1.01457 0.97419 0.95471 1.22572 0.99566 0.84305 0.96885 1.48313 1.57487 1.15271 1.14431 1.17129 0.79000 0.83703 0.84244 1.91012 1.52426 1.20145 1.68144 1.20571 1.06310 0.97061 0.95943 1.22639 1.02041 1.01072 0.86406 1.41393 1.38912 1.19888 1.14484 0.75003 1.21738 1.03198 0.89361 1.00062 1.19156 1.00514 0.95179 0.92891 1.17904 0.97159 0.91062 0.94901 1.20919 0.94991 0.97600 0.94303 1.20934 0.99826 0.92929 0.98494 1.21028 0.99850 0.98200 0.94546 1.20849 0.99407 0.97030 0.97361 1.20960 1.00194 0.92760 0.99282 0.94257 0.75850 0.96916 0.96756 0.90525 0.90333 0.90395 0.90810 0.91997 0.90451 0.80150 0.81430 0.86882 0.86559 0.86962 0.86952 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.73 13.06 55.49 0.72 -29.01 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.89 24.52 29.55 -169.99 -5.02 19.50 16 4 H -0.29 -8.07 7.11 56.52 0.40 -7.67 16 5 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.29 -7.99 7.11 56.52 0.40 -7.58 16 7 C -0.24 -7.39 9.99 -15.06 -0.15 -7.54 16 8 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 9 N -0.72 -20.36 4.30 -59.91 -0.26 -20.62 16 10 C 0.15 3.32 5.60 -4.04 -0.02 3.29 16 11 C 0.13 2.38 3.06 -66.96 -0.20 2.17 16 12 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 13 C -0.12 -1.53 6.43 -24.90 -0.16 -1.69 16 14 C -0.13 -1.27 7.08 -24.59 -0.17 -1.45 16 15 C 0.09 1.02 5.31 -2.53 -0.01 1.01 16 16 N -0.62 -10.47 3.06 -164.39 -0.50 -10.98 16 17 C 0.57 11.68 7.62 -12.65 -0.10 11.58 16 18 O -0.45 -11.49 10.84 5.25 0.06 -11.44 16 19 C -0.19 -3.19 6.23 -103.15 -0.64 -3.83 16 20 C 0.01 0.14 10.25 -16.87 -0.17 -0.03 16 21 N -0.55 -5.22 5.88 -12.64 -0.07 -5.29 16 22 H 0.41 2.15 8.96 -40.82 -0.37 1.78 16 23 C -0.02 -0.18 11.80 -16.50 -0.19 -0.38 16 24 C -0.07 -1.18 5.78 -102.93 -0.60 -1.77 16 25 C -0.01 -0.18 5.34 -104.91 -0.56 -0.74 16 26 C -0.06 -1.19 8.06 -39.24 -0.32 -1.51 16 27 C -0.10 -2.00 10.03 -39.63 -0.40 -2.40 16 28 C -0.12 -2.12 10.04 -39.51 -0.40 -2.52 16 29 C -0.13 -2.20 10.03 -39.63 -0.40 -2.60 16 30 C -0.11 -1.99 9.72 -39.24 -0.38 -2.37 16 31 H 0.25 7.92 8.31 -40.82 -0.34 7.58 16 32 H 0.40 12.10 5.04 -40.82 -0.21 11.90 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 35 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.65 8.06 -51.93 -0.42 0.24 16 40 H 0.08 0.72 5.26 -51.93 -0.27 0.45 16 41 H 0.18 1.57 4.71 -52.49 -0.25 1.32 16 42 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.11 2.29 7.76 -52.48 -0.41 1.89 16 44 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 45 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 46 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -39.84 378.71 -10.86 -50.70 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -6.52 Total: 12.50 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -4.97 Total: -11.06 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -0.11 Total: -65.90 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.06 Total: -11.44 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.02 Total: 19.50 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.84 -10.86 -50.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716790047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.385 kcal (2) G-P(sol) polarization free energy of solvation -39.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds