Wall clock time and date at job start Tue Mar 31 2020 22:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99955 * 2 1 4 4 H 1.48505 * 109.46791 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47056 * 120.00420 * 3 2 1 6 6 H 1.48500 * 109.47291 * 240.00758 * 3 2 1 7 7 C 1.38811 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99914 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00289 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47512 * 183.59472 * 10 9 7 12 12 H 1.08999 * 109.87214 * 316.34581 * 11 10 9 13 13 C 1.54323 * 109.88251 * 195.33212 * 11 10 9 14 14 C 1.55154 * 102.94206 * 218.38620 * 13 11 10 15 15 C 1.54907 * 101.58258 * 35.50136 * 14 13 11 16 16 N 1.47015 * 109.88371 * 77.52283 * 11 10 9 17 17 C 1.34781 * 125.64837 * 298.33692 * 16 11 10 18 18 O 1.21636 * 120.00035 * 1.88077 * 17 16 11 19 19 C 1.47130 * 120.00105 * 181.88638 * 17 16 11 20 20 C 1.36623 * 126.97466 * 351.72763 * 19 17 16 21 21 N 1.34706 * 108.68362 * 179.97438 * 20 19 17 22 22 H 0.96993 * 124.72400 * 179.97438 * 21 20 19 23 23 C 1.36218 * 110.54726 * 0.02562 * 21 20 19 24 24 C 1.35747 * 108.67785 * 359.74714 * 23 21 20 25 25 C 1.48290 * 126.97975 * 180.23275 * 24 23 21 26 26 C 1.39385 * 120.12701 * 129.90084 * 25 24 23 27 27 C 1.38007 * 119.87214 * 179.67458 * 26 25 24 28 28 C 1.38326 * 120.12304 * 0.62231 * 27 26 25 29 29 C 1.38338 * 120.25442 * 359.67777 * 28 27 26 30 30 C 1.37992 * 120.12734 * 359.97438 * 29 28 27 31 31 H 0.96998 * 119.99933 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99814 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47103 * 303.59483 * 10 9 7 34 34 H 1.09002 * 109.46876 * 63.59321 * 10 9 7 35 35 H 1.09005 * 110.72249 * 336.75055 * 13 11 10 36 36 H 1.09001 * 110.72414 * 100.02690 * 13 11 10 37 37 H 1.08998 * 111.00647 * 153.57611 * 14 13 11 38 38 H 1.09002 * 111.00533 * 277.42754 * 14 13 11 39 39 H 1.09002 * 110.37035 * 81.82815 * 15 14 13 40 40 H 1.08995 * 110.37370 * 204.14827 * 15 14 13 41 41 H 1.08002 * 125.65580 * 359.97438 * 20 19 17 42 42 H 1.07996 * 125.65755 * 179.97438 * 23 21 20 43 43 H 1.08005 * 120.06718 * 359.97438 * 26 25 24 44 44 H 1.07996 * 119.93833 * 180.33850 * 27 26 25 45 45 H 1.08002 * 119.87804 * 179.69885 * 28 27 26 46 46 H 1.08000 * 119.93233 * 180.02562 * 29 28 27 47 47 H 1.08004 * 120.06449 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0664 -4.8183 -0.0910 12 1 0.2245 -4.6395 0.5779 13 6 1.7684 -6.1387 0.2902 14 6 1.1523 -7.1591 -0.7029 15 6 0.9815 -6.2912 -1.9746 16 7 0.5887 -4.9614 -1.4740 17 6 -0.0955 -4.0310 -2.1689 18 8 -0.3368 -2.9507 -1.6647 19 6 -0.5506 -4.3222 -3.5374 20 6 -0.2296 -5.4125 -4.2957 21 7 -0.8484 -5.3066 -5.4875 22 1 -0.7804 -5.9557 -6.2049 23 6 -1.5821 -4.1603 -5.5450 24 6 -1.4495 -3.4996 -4.3666 25 6 -2.0788 -2.2105 -3.9910 26 6 -2.7649 -2.0925 -2.7835 27 6 -3.3428 -0.8884 -2.4360 28 6 -3.2531 0.1965 -3.2895 29 6 -2.5788 0.0835 -4.4920 30 6 -1.9909 -1.1136 -4.8466 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.7322 -3.6871 -0.8566 34 1 2.6356 -3.7429 0.9199 35 1 2.8456 -6.0593 0.1429 36 1 1.5382 -6.4148 1.3192 37 1 1.8355 -7.9886 -0.8849 38 1 0.1885 -7.5204 -0.3441 39 1 1.9230 -6.2282 -2.5202 40 1 0.1994 -6.7026 -2.6126 41 1 0.4136 -6.2245 -3.9901 42 1 -2.1743 -3.8335 -6.3869 43 1 -2.8400 -2.9404 -2.1187 44 1 -3.8700 -0.7943 -1.4982 45 1 -3.7111 1.1356 -3.0158 46 1 -2.5116 0.9340 -5.1542 47 1 -1.4650 -1.2008 -5.7859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716790047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:04 Heat of formation + Delta-G solvation = 59.581020 kcal Electronic energy + Delta-G solvation = -30382.785234 eV Core-core repulsion = 26531.601089 eV Total energy + Delta-G solvation = -3851.184144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14237 -40.56193 -39.53600 -37.97900 -36.15807 -33.44014 -33.31210 -32.60021 -31.67036 -30.78855 -30.06812 -29.09890 -26.69038 -25.09188 -23.95996 -23.71508 -23.28052 -22.28452 -21.60926 -20.64985 -19.95787 -19.04569 -18.46045 -17.44015 -17.31803 -17.03423 -16.58315 -15.95208 -15.89299 -15.59470 -15.28684 -15.14390 -14.82865 -14.60458 -14.59861 -14.23985 -14.15890 -14.00973 -13.89626 -13.57956 -13.53220 -13.10443 -13.05248 -12.84259 -12.83721 -12.60971 -12.29655 -11.97027 -11.91214 -11.85422 -11.72954 -11.55255 -11.45588 -10.83700 -10.39726 -10.06204 -9.63861 -9.41444 -9.26682 -8.83109 -8.70813 -7.72414 -4.99462 0.42416 0.69477 1.00748 1.39338 1.44737 1.50240 1.60514 2.21787 2.52300 2.61371 2.81968 3.09221 3.53016 3.68031 3.76154 3.96664 4.03181 4.08630 4.15130 4.21147 4.26621 4.34471 4.35835 4.44616 4.47512 4.58650 4.67124 4.72904 4.80058 4.81074 4.86046 4.90214 4.96801 5.04019 5.07784 5.20539 5.23676 5.27679 5.29728 5.45140 5.51854 5.54928 5.70934 5.74194 5.79470 5.92492 6.01259 6.28328 6.42349 6.75901 6.93334 7.49097 7.76976 8.42360 8.70905 9.47366 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007238 B = 0.006563 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3867.562312 B = 4265.470762 C = 7310.482882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.069 4.069 3 Si 0.960 3.040 4 H -0.295 1.295 5 H -0.277 1.277 6 H -0.287 1.287 7 C -0.250 4.250 8 H 0.058 0.942 9 N -0.730 5.730 10 C 0.146 3.854 11 C 0.135 3.865 12 H 0.040 0.960 13 C -0.115 4.115 14 C -0.117 4.117 15 C 0.080 3.920 16 N -0.619 5.619 17 C 0.557 3.443 18 O -0.520 6.520 19 C -0.241 4.241 20 C 0.049 3.951 21 N -0.525 5.525 22 H 0.441 0.559 23 C 0.017 3.983 24 C -0.124 4.124 25 C -0.015 4.015 26 C -0.084 4.084 27 C -0.128 4.128 28 C -0.135 4.135 29 C -0.131 4.131 30 C -0.125 4.125 31 H 0.240 0.760 32 H 0.388 0.612 33 H 0.002 0.998 34 H 0.020 0.980 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.218 0.782 42 H 0.203 0.797 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.131 0.869 46 H 0.144 0.856 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 -20.323 -14.384 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.263 4.263 3 Si 0.790 3.210 4 H -0.221 1.221 5 H -0.203 1.203 6 H -0.214 1.214 7 C -0.383 4.383 8 H 0.076 0.924 9 N -0.380 5.380 10 C 0.018 3.982 11 C 0.031 3.969 12 H 0.058 0.942 13 C -0.154 4.154 14 C -0.155 4.155 15 C -0.041 4.041 16 N -0.355 5.355 17 C 0.347 3.653 18 O -0.395 6.395 19 C -0.251 4.251 20 C -0.087 4.087 21 N -0.121 5.121 22 H 0.283 0.717 23 C -0.113 4.113 24 C -0.131 4.131 25 C -0.015 4.015 26 C -0.102 4.102 27 C -0.146 4.146 28 C -0.153 4.153 29 C -0.148 4.148 30 C -0.143 4.143 31 H 0.049 0.951 32 H 0.228 0.772 33 H 0.020 0.980 34 H 0.038 0.962 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.234 0.766 42 H 0.220 0.780 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.149 0.851 46 H 0.161 0.839 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.079 -19.667 -14.292 24.506 hybrid contribution 0.214 1.505 0.475 1.593 sum -2.865 -18.162 -13.817 23.000 Atomic orbital electron populations 1.69952 1.06019 1.24502 1.58284 1.25453 0.96287 1.00238 1.04272 0.85422 0.77305 0.80481 0.77777 1.22101 1.20278 1.21404 1.19431 0.90513 0.86351 1.41975 0.92425 1.42986 1.06854 0.99982 1.88144 1.21138 0.93940 0.86637 0.96517 1.21725 0.95316 0.96347 0.83551 0.94189 1.22619 1.00451 0.91116 1.01185 1.22795 1.02518 0.97174 0.92988 1.22981 1.01060 0.81608 0.98465 1.48410 1.56287 1.16964 1.13867 1.17881 0.78433 0.83349 0.85667 1.90961 1.55390 1.23217 1.69903 1.20471 1.09298 1.00021 0.95291 1.22938 1.00319 0.99572 0.85852 1.41401 1.36853 1.19423 1.14432 0.71704 1.22077 1.01605 0.88741 0.98902 1.19323 1.02814 0.95655 0.95283 1.18238 0.96073 0.92991 0.94225 1.20877 0.96819 0.97166 0.95366 1.21096 1.00737 0.93790 0.99001 1.21295 1.00609 0.98385 0.94993 1.21271 0.98266 0.98065 0.97243 1.21342 1.00285 0.92439 1.00228 0.95090 0.77196 0.97995 0.96237 0.89630 0.88949 0.86312 0.90238 0.90288 0.87877 0.76559 0.78009 0.89242 0.87109 0.85136 0.83869 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -65.03 13.06 21.65 0.28 -64.74 16 2 C -0.07 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.96 52.21 29.55 68.60 2.03 54.23 16 4 H -0.29 -15.94 7.11 99.48 0.71 -15.23 16 5 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.29 -15.26 7.11 99.48 0.71 -14.56 16 7 C -0.25 -16.24 9.99 84.03 0.84 -15.40 16 8 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 9 N -0.73 -44.03 4.30 -343.46 -1.48 -45.50 16 10 C 0.15 6.84 5.60 86.38 0.48 7.33 16 11 C 0.13 4.92 3.06 45.34 0.14 5.06 16 12 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 13 C -0.12 -2.59 6.43 31.78 0.20 -2.39 16 14 C -0.12 -1.74 7.08 31.98 0.23 -1.52 16 15 C 0.08 1.54 5.31 86.85 0.46 2.00 16 16 N -0.62 -21.12 3.06 -792.25 -2.43 -23.55 16 17 C 0.56 23.85 7.62 86.58 0.66 24.51 16 18 O -0.52 -28.99 10.84 -4.15 -0.04 -29.03 16 19 C -0.24 -8.10 6.23 -18.91 -0.12 -8.22 16 20 C 0.05 0.98 10.25 83.87 0.86 1.84 16 21 N -0.53 -7.46 5.88 -193.89 -1.14 -8.60 16 22 H 0.44 1.88 8.96 -92.71 -0.83 1.05 16 23 C 0.02 0.35 11.80 83.43 0.98 1.33 16 24 C -0.12 -4.13 5.78 -18.77 -0.11 -4.24 16 25 C -0.01 -0.57 5.34 -20.05 -0.11 -0.68 16 26 C -0.08 -3.70 8.06 22.49 0.18 -3.52 16 27 C -0.13 -5.48 10.03 22.24 0.22 -5.26 16 28 C -0.13 -5.13 10.04 22.31 0.22 -4.90 16 29 C -0.13 -4.54 10.03 22.24 0.22 -4.31 16 30 C -0.12 -4.41 9.72 22.49 0.22 -4.19 16 31 H 0.24 16.25 8.31 -92.71 -0.77 15.48 16 32 H 0.39 25.40 5.04 -92.71 -0.47 24.94 16 33 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.02 0.90 8.06 -2.39 -0.02 0.88 16 35 H 0.09 1.80 7.85 -2.38 -0.02 1.78 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.31 8.06 -2.39 -0.02 1.29 16 40 H 0.10 1.44 5.26 -2.39 -0.01 1.43 16 41 H 0.22 2.58 4.71 -2.91 -0.01 2.57 16 42 H 0.20 2.74 8.06 -2.91 -0.02 2.72 16 43 H 0.09 4.19 7.76 -2.91 -0.02 4.17 16 44 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 45 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 46 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 47 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -97.92 378.71 2.99 -94.93 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -0.29 Total: 38.88 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 6.06 Total: -16.61 kcal Atomic # 7 Polarization: -137.63 SS G_CDS: -4.76 Total: -142.40 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.04 Total: -29.03 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.03 Total: 54.23 kcal Total: -97.92 2.99 -94.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716790047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.509 kcal (2) G-P(sol) polarization free energy of solvation -97.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds