Wall clock time and date at job start Tue Mar 31 2020 22:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00026 * 2 1 4 4 H 1.48502 * 109.47063 * 270.00217 * 3 2 1 5 5 H 1.48500 * 109.47048 * 30.00007 * 3 2 1 6 6 H 1.48499 * 109.46891 * 150.00241 * 3 2 1 7 7 C 1.38818 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99707 * 359.97438 * 7 2 1 9 9 N 1.36929 * 119.99937 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00094 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47257 * 179.97438 * 10 9 7 12 12 C 1.53780 * 113.61526 * 184.99974 * 11 10 9 13 13 C 1.53784 * 87.08159 * 220.02474 * 12 11 10 14 14 N 1.46500 * 113.61601 * 139.98243 * 13 12 11 15 15 C 1.34778 * 120.00212 * 156.52674 * 14 13 12 16 16 O 1.21581 * 119.99812 * 359.72504 * 15 14 13 17 17 C 1.47573 * 119.99936 * 179.72866 * 15 14 13 18 18 C 1.39657 * 120.19664 * 6.87073 * 17 15 14 19 19 C 1.37822 * 119.91784 * 179.97438 * 18 17 15 20 20 C 1.38533 * 120.31326 * 0.02562 * 19 18 17 21 21 C 1.38066 * 120.39182 * 0.02562 * 20 19 18 22 22 C 1.38768 * 120.07621 * 359.69386 * 21 20 19 23 23 N 1.39665 * 120.15989 * 180.27921 * 22 21 20 24 24 C 1.36649 * 125.67571 * 57.31683 * 23 22 21 25 25 C 1.34812 * 108.19044 * 179.86908 * 24 23 22 26 26 C 1.40997 * 107.48508 * 0.38684 * 25 24 23 27 27 C 1.34804 * 107.48704 * 359.76254 * 26 25 24 28 28 C 1.53776 * 87.17318 * 25.39079 * 13 12 11 29 29 H 0.96997 * 120.00162 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00015 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46879 * 60.00078 * 10 9 7 32 32 H 1.09000 * 109.47112 * 300.00077 * 10 9 7 33 33 H 1.08998 * 112.85346 * 316.20157 * 11 10 9 34 34 H 1.08997 * 113.61660 * 105.47417 * 12 11 10 35 35 H 1.09004 * 113.68882 * 334.57959 * 12 11 10 36 36 H 1.09004 * 113.61015 * 270.79867 * 13 12 11 37 37 H 0.96997 * 119.99902 * 336.25108 * 14 13 12 38 38 H 1.08003 * 120.03724 * 359.96613 * 18 17 15 39 39 H 1.07998 * 119.84403 * 179.97438 * 19 18 17 40 40 H 1.08000 * 119.80730 * 180.02562 * 20 19 18 41 41 H 1.07998 * 119.96375 * 179.97438 * 21 20 19 42 42 H 1.07999 * 125.91066 * 0.02562 * 24 23 22 43 43 H 1.07999 * 126.25912 * 180.14761 * 25 24 23 44 44 H 1.08003 * 126.25527 * 179.73257 * 26 25 24 45 45 H 1.07994 * 125.90613 * 180.02562 * 27 26 25 46 46 H 1.09000 * 113.61222 * 89.16190 * 28 13 12 47 47 H 1.09004 * 113.61135 * 220.06158 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0024 12 6 6.4784 -3.4588 -0.1253 13 6 7.4248 -2.8201 0.9050 14 7 7.9466 -3.7701 1.8906 15 6 9.1012 -3.5072 2.5343 16 8 9.7122 -2.4841 2.2934 17 6 9.6238 -4.4614 3.5315 18 6 9.0055 -5.7010 3.7089 19 6 9.4987 -6.5880 4.6414 20 6 10.6056 -6.2558 5.4053 21 6 11.2261 -5.0334 5.2414 22 6 10.7467 -4.1304 4.3030 23 7 11.3766 -2.8957 4.1316 24 6 12.6923 -2.7097 3.8128 25 6 12.9226 -1.3838 3.7328 26 6 11.7096 -0.7251 4.0206 27 6 10.7812 -1.6725 4.2608 28 6 6.2135 -2.0159 1.4058 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 -0.0014 31 1 3.8485 -3.0426 -0.8908 32 1 3.8491 -3.0423 0.8891 33 1 5.8996 -1.4015 -0.6981 34 1 6.9277 -3.5875 -1.1099 35 1 5.9847 -4.3610 0.2359 36 1 8.2042 -2.2029 0.4581 37 1 7.4592 -4.5864 2.0828 38 1 8.1420 -5.9643 3.1160 39 1 9.0195 -7.5461 4.7779 40 1 10.9855 -6.9572 6.1335 41 1 12.0884 -4.7814 5.8409 42 1 13.4211 -3.4900 3.6501 43 1 13.8648 -0.9123 3.4958 44 1 11.5531 0.3433 4.0448 45 1 9.7458 -1.4954 4.5114 46 1 5.6461 -2.5221 2.1869 47 1 6.4493 -0.9814 1.6554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717390675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:46 Heat of formation + Delta-G solvation = 96.529934 kcal Electronic energy + Delta-G solvation = -28321.061205 eV Core-core repulsion = 24471.479286 eV Total energy + Delta-G solvation = -3849.581919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.83431 -40.24257 -39.16693 -38.10049 -34.81115 -33.73595 -33.24211 -31.75701 -31.04407 -29.19604 -28.80889 -27.23796 -25.65610 -24.72020 -23.46384 -22.87456 -21.55625 -20.76830 -20.29073 -20.24385 -19.68196 -18.64404 -17.73420 -17.53330 -16.53756 -15.78267 -15.70226 -15.29697 -15.18712 -15.07090 -14.43944 -14.36010 -14.04210 -13.77384 -13.62359 -13.53600 -13.44093 -12.86797 -12.69362 -12.51589 -12.40876 -12.35085 -12.09001 -12.02952 -11.99055 -11.77873 -11.54045 -10.97218 -10.82103 -10.30227 -10.25925 -10.10090 -9.95296 -9.77589 -9.64219 -9.58113 -9.12767 -8.87397 -8.50938 -8.04195 -7.21835 -5.76534 -3.11671 0.20003 0.58647 2.22322 2.53746 2.75604 2.88888 3.11871 3.27510 3.39108 3.42554 3.46729 4.15634 4.20438 4.39405 4.54430 4.60004 4.64253 4.69020 4.72462 4.72751 4.89364 4.95256 5.12258 5.17862 5.27364 5.42237 5.51217 5.56100 5.57042 5.64572 5.67924 5.72718 5.77367 5.78803 5.81186 5.89355 6.04504 6.11943 6.15003 6.20421 6.26652 6.26854 6.48989 6.66449 6.77928 6.95757 7.16246 7.27432 7.41611 7.97675 7.99738 8.42815 9.22291 9.94934 10.15060 11.41940 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.002372 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.994484 B =11803.587165 C =12905.034515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.756 5.756 10 C 0.170 3.830 11 C -0.116 4.116 12 C -0.135 4.135 13 C 0.120 3.880 14 N -0.711 5.711 15 C 0.547 3.453 16 O -0.510 6.510 17 C -0.136 4.136 18 C -0.073 4.073 19 C -0.124 4.124 20 C -0.080 4.080 21 C -0.127 4.127 22 C 0.179 3.821 23 N -0.406 5.406 24 C -0.021 4.021 25 C -0.187 4.187 26 C -0.207 4.207 27 C 0.053 3.947 28 C -0.141 4.141 29 H 0.259 0.741 30 H 0.361 0.639 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.398 0.602 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.156 0.844 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.151 0.849 46 H 0.086 0.914 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.974 -15.314 10.872 32.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.043 3.957 11 C -0.135 4.135 12 C -0.174 4.174 13 C 0.016 3.984 14 N -0.362 5.362 15 C 0.333 3.667 16 O -0.386 6.386 17 C -0.141 4.141 18 C -0.092 4.092 19 C -0.142 4.142 20 C -0.099 4.099 21 C -0.146 4.146 22 C 0.087 3.913 23 N -0.080 5.080 24 C -0.146 4.146 25 C -0.211 4.211 26 C -0.231 4.231 27 C -0.073 4.073 28 C -0.179 4.179 29 H 0.069 0.931 30 H 0.194 0.806 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.233 0.767 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.173 0.827 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.169 0.831 46 H 0.104 0.896 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 27.041 -14.905 10.707 32.680 hybrid contribution 0.149 0.788 0.011 0.803 sum 27.190 -14.116 10.718 32.457 Atomic orbital electron populations 1.69704 1.05118 1.25836 1.57665 1.24682 0.95255 0.97262 1.02055 0.86537 0.79267 0.84883 0.77815 1.21060 1.21737 1.20240 1.19061 0.80715 0.94694 1.42946 0.89301 1.42706 1.03993 1.02306 1.91097 1.20569 0.87427 0.89281 0.98422 1.22616 0.96295 0.97458 0.97112 1.23316 0.96663 0.98471 0.98953 1.22684 0.94905 0.91503 0.89283 1.45974 1.23669 1.24645 1.41940 1.18149 0.81235 0.85964 0.81342 1.90898 1.57708 1.26076 1.63897 1.20114 0.98688 0.96277 0.99023 1.21300 0.98684 0.91914 0.97297 1.21226 0.96767 1.00137 0.96087 1.21270 0.94780 0.95594 0.98279 1.21200 1.01787 0.94232 0.97387 1.17663 0.92969 0.85915 0.94774 1.41182 1.08806 1.03269 1.54783 1.21706 0.84620 0.97932 1.10343 1.20846 0.98823 0.92645 1.08826 1.20789 0.93497 0.98484 1.10333 1.21532 0.98160 0.82331 1.05324 1.23517 0.95830 1.00841 0.97743 0.93071 0.80623 0.95455 0.95592 0.88932 0.90790 0.89499 0.86836 0.76655 0.84676 0.84587 0.84587 0.84558 0.82655 0.84816 0.84831 0.83150 0.89570 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.64 13.97 55.49 0.78 -28.86 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.43 27.73 -169.99 -4.71 17.72 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 7 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.76 -18.03 5.41 -59.91 -0.32 -18.36 16 10 C 0.17 3.18 6.10 -4.04 -0.02 3.16 16 11 C -0.12 -1.67 3.75 -89.71 -0.34 -2.01 16 12 C -0.14 -1.48 7.39 -25.92 -0.19 -1.68 16 13 C 0.12 1.40 4.21 -67.12 -0.28 1.12 16 14 N -0.71 -7.18 5.31 -54.05 -0.29 -7.47 16 15 C 0.55 6.58 7.58 -12.45 -0.09 6.48 16 16 O -0.51 -7.87 12.20 5.29 0.06 -7.81 16 17 C -0.14 -1.34 5.87 -104.82 -0.62 -1.96 16 18 C -0.07 -0.48 9.52 -39.20 -0.37 -0.86 16 19 C -0.12 -0.64 10.02 -39.62 -0.40 -1.03 16 20 C -0.08 -0.42 10.03 -39.54 -0.40 -0.82 16 21 C -0.13 -0.92 9.77 -39.45 -0.39 -1.31 16 22 C 0.18 1.82 5.86 -83.35 -0.49 1.33 16 23 N -0.41 -4.84 2.11 -60.69 -0.13 -4.97 16 24 C -0.02 -0.23 11.22 -16.62 -0.19 -0.42 16 25 C -0.19 -2.20 10.86 -39.75 -0.43 -2.63 16 26 C -0.21 -2.67 10.86 -39.75 -0.43 -3.10 16 27 C 0.05 0.70 7.98 -16.62 -0.13 0.57 16 28 C -0.14 -1.92 7.45 -25.83 -0.19 -2.12 16 29 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 30 H 0.36 8.47 5.53 -40.82 -0.23 8.24 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.49 7.85 -51.93 -0.41 0.08 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.11 1.49 7.50 -51.93 -0.39 1.10 16 37 H 0.40 2.93 6.79 -40.82 -0.28 2.66 16 38 H 0.14 0.59 6.46 -52.48 -0.34 0.25 16 39 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 40 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 45 H 0.15 1.95 7.95 -52.49 -0.42 1.53 16 46 H 0.09 1.19 7.90 -51.93 -0.41 0.78 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -35.68 387.26 -10.70 -46.38 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.71 Total: 9.92 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -5.21 Total: -12.39 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.04 Total: -59.66 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.06 Total: -7.81 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.68 -10.70 -46.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717390675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.906 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds