Wall clock time and date at job start Tue Mar 31 2020 22:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00026 * 2 1 4 4 H 1.48502 * 109.47063 * 270.00217 * 3 2 1 5 5 H 1.48500 * 109.47048 * 30.00007 * 3 2 1 6 6 H 1.48499 * 109.46891 * 150.00241 * 3 2 1 7 7 C 1.38818 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99707 * 359.97438 * 7 2 1 9 9 N 1.36929 * 119.99937 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00094 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47257 * 179.97438 * 10 9 7 12 12 C 1.53780 * 113.61526 * 184.99974 * 11 10 9 13 13 C 1.53784 * 87.08159 * 220.02474 * 12 11 10 14 14 N 1.46500 * 113.61601 * 139.98243 * 13 12 11 15 15 C 1.34778 * 120.00212 * 156.52674 * 14 13 12 16 16 O 1.21581 * 119.99812 * 359.72504 * 15 14 13 17 17 C 1.47573 * 119.99936 * 179.72866 * 15 14 13 18 18 C 1.39657 * 120.19664 * 6.87073 * 17 15 14 19 19 C 1.37822 * 119.91784 * 179.97438 * 18 17 15 20 20 C 1.38533 * 120.31326 * 0.02562 * 19 18 17 21 21 C 1.38066 * 120.39182 * 0.02562 * 20 19 18 22 22 C 1.38768 * 120.07621 * 359.69386 * 21 20 19 23 23 N 1.39665 * 120.15989 * 180.27921 * 22 21 20 24 24 C 1.36649 * 125.67571 * 57.31683 * 23 22 21 25 25 C 1.34812 * 108.19044 * 179.86908 * 24 23 22 26 26 C 1.40997 * 107.48508 * 0.38684 * 25 24 23 27 27 C 1.34804 * 107.48704 * 359.76254 * 26 25 24 28 28 C 1.53776 * 87.17318 * 25.39079 * 13 12 11 29 29 H 0.96997 * 120.00162 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00015 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46879 * 60.00078 * 10 9 7 32 32 H 1.09000 * 109.47112 * 300.00077 * 10 9 7 33 33 H 1.08998 * 112.85346 * 316.20157 * 11 10 9 34 34 H 1.08997 * 113.61660 * 105.47417 * 12 11 10 35 35 H 1.09004 * 113.68882 * 334.57959 * 12 11 10 36 36 H 1.09004 * 113.61015 * 270.79867 * 13 12 11 37 37 H 0.96997 * 119.99902 * 336.25108 * 14 13 12 38 38 H 1.08003 * 120.03724 * 359.96613 * 18 17 15 39 39 H 1.07998 * 119.84403 * 179.97438 * 19 18 17 40 40 H 1.08000 * 119.80730 * 180.02562 * 20 19 18 41 41 H 1.07998 * 119.96375 * 179.97438 * 21 20 19 42 42 H 1.07999 * 125.91066 * 0.02562 * 24 23 22 43 43 H 1.07999 * 126.25912 * 180.14761 * 25 24 23 44 44 H 1.08003 * 126.25527 * 179.73257 * 26 25 24 45 45 H 1.07994 * 125.90613 * 180.02562 * 27 26 25 46 46 H 1.09000 * 113.61222 * 89.16190 * 28 13 12 47 47 H 1.09004 * 113.61135 * 220.06158 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0024 12 6 6.4784 -3.4588 -0.1253 13 6 7.4248 -2.8201 0.9050 14 7 7.9466 -3.7701 1.8906 15 6 9.1012 -3.5072 2.5343 16 8 9.7122 -2.4841 2.2934 17 6 9.6238 -4.4614 3.5315 18 6 9.0055 -5.7010 3.7089 19 6 9.4987 -6.5880 4.6414 20 6 10.6056 -6.2558 5.4053 21 6 11.2261 -5.0334 5.2414 22 6 10.7467 -4.1304 4.3030 23 7 11.3766 -2.8957 4.1316 24 6 12.6923 -2.7097 3.8128 25 6 12.9226 -1.3838 3.7328 26 6 11.7096 -0.7251 4.0206 27 6 10.7812 -1.6725 4.2608 28 6 6.2135 -2.0159 1.4058 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 -0.0014 31 1 3.8485 -3.0426 -0.8908 32 1 3.8491 -3.0423 0.8891 33 1 5.8996 -1.4015 -0.6981 34 1 6.9277 -3.5875 -1.1099 35 1 5.9847 -4.3610 0.2359 36 1 8.2042 -2.2029 0.4581 37 1 7.4592 -4.5864 2.0828 38 1 8.1420 -5.9643 3.1160 39 1 9.0195 -7.5461 4.7779 40 1 10.9855 -6.9572 6.1335 41 1 12.0884 -4.7814 5.8409 42 1 13.4211 -3.4900 3.6501 43 1 13.8648 -0.9123 3.4958 44 1 11.5531 0.3433 4.0448 45 1 9.7458 -1.4954 4.5114 46 1 5.6461 -2.5221 2.1869 47 1 6.4493 -0.9814 1.6554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717390675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:45 Heat of formation + Delta-G solvation = 75.044863 kcal Electronic energy + Delta-G solvation = -28321.992868 eV Core-core repulsion = 24471.479286 eV Total energy + Delta-G solvation = -3850.513582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.61606 -41.16767 -39.96176 -38.98659 -36.50767 -34.85953 -33.99377 -33.31805 -32.16290 -29.88185 -29.68643 -28.79670 -26.67953 -25.67500 -24.48638 -23.95369 -22.91252 -21.75262 -21.16665 -21.10820 -20.72542 -19.58253 -19.38112 -18.42325 -17.47197 -16.77784 -16.47114 -16.35387 -16.10416 -16.01592 -15.90165 -15.50116 -15.12548 -14.93205 -14.69065 -14.54331 -14.44140 -14.32261 -13.70173 -13.56366 -13.40158 -13.20567 -13.19102 -13.08446 -12.96998 -12.92396 -12.77890 -12.41884 -12.19776 -12.02023 -11.87278 -11.47993 -11.36311 -10.99881 -10.90329 -10.39221 -10.25404 -9.98613 -9.29429 -9.28657 -8.94625 -8.04674 -5.37158 -0.40415 0.08529 1.36646 1.38742 1.42015 1.46231 1.77791 1.98842 2.09666 2.19371 2.46421 2.66698 3.26406 3.45323 3.49699 3.59091 3.68120 3.81483 3.87288 3.98602 4.00738 4.05417 4.24710 4.27631 4.29637 4.46384 4.55142 4.59374 4.62680 4.73382 4.77500 4.83612 4.84803 4.92635 4.96401 5.07007 5.07855 5.18914 5.20546 5.33539 5.35729 5.37411 5.40105 5.59051 5.70126 5.74740 6.06822 6.20122 6.28508 6.47525 6.62050 7.06923 7.15248 7.84779 8.02411 9.16916 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.002372 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.994484 B =11803.587165 C =12905.034515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.255 1.255 7 C -0.233 4.233 8 H 0.059 0.941 9 N -0.760 5.760 10 C 0.167 3.833 11 C -0.116 4.116 12 C -0.114 4.114 13 C 0.131 3.869 14 N -0.699 5.699 15 C 0.542 3.458 16 O -0.553 6.553 17 C -0.159 4.159 18 C -0.071 4.071 19 C -0.116 4.116 20 C -0.069 4.069 21 C -0.130 4.130 22 C 0.145 3.855 23 N -0.405 5.405 24 C -0.022 4.022 25 C -0.205 4.205 26 C -0.228 4.228 27 C 0.036 3.964 28 C -0.142 4.142 29 H 0.258 0.742 30 H 0.364 0.636 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.413 0.587 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.145 0.855 42 H 0.181 0.819 43 H 0.150 0.850 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.086 0.914 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.023 -17.968 11.558 36.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.180 1.180 7 C -0.364 4.364 8 H 0.077 0.923 9 N -0.406 5.406 10 C 0.041 3.959 11 C -0.136 4.136 12 C -0.152 4.152 13 C 0.026 3.974 14 N -0.351 5.351 15 C 0.330 3.670 16 O -0.432 6.432 17 C -0.164 4.164 18 C -0.090 4.090 19 C -0.133 4.133 20 C -0.087 4.087 21 C -0.149 4.149 22 C 0.054 3.946 23 N -0.079 5.079 24 C -0.148 4.148 25 C -0.230 4.230 26 C -0.252 4.252 27 C -0.092 4.092 28 C -0.181 4.181 29 H 0.067 0.933 30 H 0.197 0.803 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.252 0.748 38 H 0.175 0.825 39 H 0.188 0.812 40 H 0.188 0.812 41 H 0.163 0.837 42 H 0.198 0.802 43 H 0.168 0.832 44 H 0.153 0.847 45 H 0.158 0.842 46 H 0.105 0.895 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 29.115 -17.634 11.400 35.897 hybrid contribution -0.529 1.416 -0.151 1.519 sum 28.586 -16.218 11.249 34.738 Atomic orbital electron populations 1.69877 1.07045 1.26663 1.59860 1.25499 0.96128 1.01194 1.02813 0.85427 0.78557 0.79792 0.78132 1.20353 1.22220 1.18003 1.19075 0.82827 0.93500 1.41035 0.92314 1.42781 1.02477 1.04437 1.90891 1.20768 0.89674 0.87135 0.98301 1.22531 0.93655 0.99685 0.97689 1.23232 0.95028 0.97358 0.99598 1.22367 0.93921 0.91539 0.89559 1.45807 1.23303 1.24792 1.41200 1.18600 0.81159 0.85829 0.81414 1.90878 1.59009 1.27968 1.65309 1.20069 0.99567 0.97273 0.99468 1.21608 0.98960 0.90689 0.97693 1.21675 0.96208 1.00885 0.94565 1.21714 0.94037 0.94918 0.98076 1.21395 1.02205 0.94543 0.96754 1.18061 0.94015 0.85903 0.96646 1.41293 1.08920 1.03619 1.54052 1.22173 0.84951 0.98460 1.09183 1.21117 0.99133 0.93150 1.09565 1.21013 0.94333 0.98834 1.11037 1.21474 0.97875 0.83465 1.06363 1.23518 0.96897 1.00375 0.97337 0.93332 0.80283 0.95370 0.95351 0.89227 0.89214 0.87465 0.88353 0.74841 0.82468 0.81200 0.81247 0.83713 0.80157 0.83223 0.84678 0.84195 0.89543 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.78 13.97 21.65 0.30 -63.48 16 2 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.95 46.59 27.73 68.60 1.90 48.49 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 6 H -0.26 -11.43 6.52 99.48 0.65 -10.78 16 7 C -0.23 -13.47 10.47 84.04 0.88 -12.59 16 8 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 9 N -0.76 -35.82 5.41 -343.46 -1.86 -37.67 16 10 C 0.17 6.05 6.10 86.38 0.53 6.58 16 11 C -0.12 -3.19 3.75 -10.21 -0.04 -3.23 16 12 C -0.11 -2.19 7.39 31.12 0.23 -1.96 16 13 C 0.13 2.89 4.21 45.52 0.19 3.08 16 14 N -0.70 -13.04 5.31 -443.17 -2.35 -15.40 16 15 C 0.54 12.83 7.58 86.71 0.66 13.49 16 16 O -0.55 -17.60 12.20 -3.97 -0.05 -17.65 16 17 C -0.16 -2.93 5.87 -19.99 -0.12 -3.05 16 18 C -0.07 -0.71 9.52 22.51 0.21 -0.50 16 19 C -0.12 -0.67 10.02 22.24 0.22 -0.44 16 20 C -0.07 -0.44 10.03 22.30 0.22 -0.21 16 21 C -0.13 -1.60 9.77 22.36 0.22 -1.38 16 22 C 0.15 2.84 5.86 38.50 0.23 3.06 16 23 N -0.40 -9.80 2.11 -345.93 -0.73 -10.53 16 24 C -0.02 -0.48 11.22 83.16 0.93 0.45 16 25 C -0.21 -4.94 10.86 22.16 0.24 -4.70 16 26 C -0.23 -6.23 10.86 22.16 0.24 -5.99 16 27 C 0.04 1.01 7.98 83.15 0.66 1.68 16 28 C -0.14 -3.78 7.45 31.18 0.23 -3.55 16 29 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 30 H 0.36 16.62 5.53 -92.71 -0.51 16.11 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.03 1.03 7.85 -2.39 -0.02 1.01 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 1.67 8.07 -2.39 -0.02 1.65 16 36 H 0.10 2.55 7.50 -2.38 -0.02 2.54 16 37 H 0.41 4.96 6.79 -92.71 -0.63 4.33 16 38 H 0.16 0.76 6.46 -2.91 -0.02 0.74 16 39 H 0.17 -0.12 8.06 -2.91 -0.02 -0.14 16 40 H 0.17 -0.04 8.06 -2.91 -0.02 -0.07 16 41 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 43 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 45 H 0.14 3.99 7.95 -2.91 -0.02 3.97 16 46 H 0.09 2.28 7.90 -2.39 -0.02 2.26 16 47 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -80.95 387.26 3.22 -77.73 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.21 Total: 31.18 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 6.21 Total: -12.67 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -4.64 Total: -127.08 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.05 Total: -17.65 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.90 Total: 48.49 kcal Total: -80.95 3.22 -77.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717390675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.777 kcal (2) G-P(sol) polarization free energy of solvation -80.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds