Wall clock time and date at job start Tue Mar 31 2020 22:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99786 * 2 1 4 4 H 1.48501 * 109.47071 * 269.99699 * 3 2 1 5 5 H 1.48495 * 109.47349 * 29.99495 * 3 2 1 6 6 H 1.48506 * 109.47396 * 149.99772 * 3 2 1 7 7 C 1.38817 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99725 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99678 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99893 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47509 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.01940 * 306.39314 * 11 10 9 13 13 C 1.53878 * 110.03083 * 67.83164 * 11 10 9 14 14 C 1.54267 * 106.59616 * 119.28449 * 13 11 10 15 15 C 1.54888 * 104.19756 * 23.61537 * 14 13 11 16 16 H 1.08997 * 110.91724 * 80.44341 * 15 14 13 17 17 N 1.46497 * 110.75847 * 203.74157 * 15 14 13 18 18 C 1.34775 * 120.00068 * 268.32631 * 17 15 14 19 19 O 1.21584 * 119.99857 * 359.97438 * 18 17 15 20 20 C 1.47552 * 120.00092 * 179.97438 * 18 17 15 21 21 C 1.38692 * 120.38677 * 354.05629 * 20 18 17 22 22 C 1.38973 * 120.53117 * 180.02562 * 21 20 18 23 23 C 1.36213 * 121.24255 * 359.76083 * 22 21 20 24 24 C 1.40708 * 120.19797 * 0.46671 * 23 22 21 25 25 N 1.33687 * 120.95066 * 179.81768 * 24 23 22 26 26 C 1.31063 * 121.34414 * 179.72180 * 25 24 23 27 27 C 1.39339 * 121.71374 * 0.03074 * 26 25 24 28 28 C 1.36680 * 119.86069 * 359.97319 * 27 26 25 29 29 C 1.40472 * 118.16828 * 359.97438 * 28 27 26 30 30 C 1.54259 * 110.03719 * 184.99981 * 11 10 9 31 31 H 0.96995 * 120.00066 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00397 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47155 * 59.99952 * 10 9 7 34 34 H 1.08995 * 109.47453 * 300.00043 * 10 9 7 35 35 H 1.09001 * 110.03369 * 238.56981 * 13 11 10 36 36 H 1.08996 * 110.03203 * 359.95527 * 13 11 10 37 37 H 1.08996 * 110.49097 * 264.93205 * 14 13 11 38 38 H 1.09001 * 110.48577 * 142.28736 * 14 13 11 39 39 H 0.97001 * 120.00014 * 88.32698 * 17 15 14 40 40 H 1.07997 * 119.73255 * 0.04374 * 21 20 18 41 41 H 1.08000 * 119.37688 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.89865 * 180.28386 * 23 22 21 43 43 H 1.08003 * 119.14410 * 180.02562 * 26 25 24 44 44 H 1.07994 * 120.07008 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.91461 * 179.97438 * 28 27 26 46 46 H 1.09001 * 110.48750 * 98.43012 * 30 11 10 47 47 H 1.09006 * 110.48919 * 335.78579 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0020 12 1 5.8723 -1.5264 -0.8231 13 6 6.0349 -1.5574 1.3402 14 6 7.0580 -2.5175 1.9816 15 6 7.6386 -3.3094 0.7838 16 1 8.4035 -2.7292 0.2677 17 7 8.1774 -4.5981 1.2255 18 6 9.4753 -4.7023 1.5735 19 8 10.1991 -3.7268 1.5203 20 6 10.0178 -6.0001 2.0189 21 6 9.1760 -7.0873 2.2005 22 6 9.6837 -8.3109 2.6205 23 6 11.0140 -8.4792 2.8599 24 6 11.9047 -7.4027 2.6936 25 7 13.2127 -7.5501 2.9278 26 6 14.0500 -6.5542 2.7701 27 6 13.6212 -5.2959 2.3526 28 6 12.2963 -5.0788 2.0963 29 6 11.4039 -6.1502 2.2660 30 6 6.3998 -3.5142 -0.1232 31 1 -0.4850 0.8400 -0.0004 32 1 3.8646 -0.3621 0.0007 33 1 3.8492 -3.0430 -0.8875 34 1 3.8486 -3.0418 0.8924 35 1 6.4945 -0.5847 1.1651 36 1 5.1663 -1.4483 1.9895 37 1 6.5627 -3.1915 2.6804 38 1 7.8450 -1.9557 2.4848 39 1 7.6000 -5.3764 1.2676 40 1 8.1175 -6.9822 2.0138 41 1 9.0113 -9.1453 2.7555 42 1 11.3857 -9.4409 3.1812 43 1 15.0996 -6.7130 2.9691 44 1 14.3342 -4.4938 2.2318 45 1 11.9453 -4.1102 1.7723 46 1 6.7064 -3.6798 -1.1560 47 1 5.7982 -4.3493 0.2357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717877209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:36 Heat of formation + Delta-G solvation = 30.371745 kcal Electronic energy + Delta-G solvation = -27920.955791 eV Core-core repulsion = 24068.505037 eV Total energy + Delta-G solvation = -3852.450754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47568 -39.98229 -38.29660 -37.32623 -35.14708 -33.71288 -33.64973 -31.44939 -30.97699 -30.55841 -29.06546 -27.92459 -25.16527 -24.55697 -23.87355 -23.47195 -21.94552 -21.09124 -20.80790 -19.46247 -18.69484 -17.96481 -17.57312 -17.21624 -16.56638 -16.40377 -15.71388 -15.30822 -15.23302 -14.91897 -14.54904 -14.48824 -14.22885 -13.89525 -13.59004 -13.47855 -13.19745 -13.06715 -12.75907 -12.56174 -12.27712 -12.15930 -12.06600 -11.81077 -11.68963 -11.44171 -10.99054 -10.92684 -10.85949 -10.55389 -10.52197 -10.44812 -10.29679 -10.00946 -9.59821 -9.59158 -9.32215 -9.25014 -8.90095 -8.70810 -7.23544 -5.77812 -3.13058 -0.29302 0.38328 1.35199 2.23277 2.75865 2.85048 3.36774 3.39780 3.44829 3.72963 3.83872 4.12007 4.24207 4.36660 4.43679 4.54628 4.58402 4.64799 4.66253 4.69959 4.86364 4.90411 5.00164 5.29966 5.32762 5.37313 5.43343 5.46409 5.47409 5.53342 5.55214 5.64393 5.70450 5.78220 5.79286 5.87464 5.91886 5.98011 6.01831 6.15654 6.18321 6.27448 6.34995 6.40425 6.49338 6.68296 6.78971 7.15644 7.48332 7.86111 7.98626 8.41446 9.20924 9.93397 10.13478 11.40639 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028063 B = 0.001925 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.531877 B =14541.576652 C =15276.997897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.756 5.756 10 C 0.165 3.835 11 C -0.100 4.100 12 H 0.075 0.925 13 C -0.119 4.119 14 C -0.131 4.131 15 C 0.137 3.863 16 H 0.099 0.901 17 N -0.711 5.711 18 C 0.562 3.438 19 O -0.534 6.534 20 C -0.112 4.112 21 C -0.073 4.073 22 C -0.112 4.112 23 C -0.065 4.065 24 C 0.118 3.882 25 N -0.479 5.479 26 C 0.133 3.867 27 C -0.179 4.179 28 C -0.061 4.061 29 C -0.067 4.067 30 C -0.120 4.120 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.401 0.599 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.160 0.840 44 H 0.139 0.861 45 H 0.179 0.821 46 H 0.072 0.928 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.230 -16.936 5.216 32.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.038 3.962 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.157 4.157 14 C -0.170 4.170 15 C 0.033 3.967 16 H 0.117 0.883 17 N -0.361 5.361 18 C 0.350 3.650 19 O -0.413 6.413 20 C -0.116 4.116 21 C -0.092 4.092 22 C -0.132 4.132 23 C -0.084 4.084 24 C -0.003 4.003 25 N -0.187 5.187 26 C -0.040 4.040 27 C -0.199 4.199 28 C -0.086 4.086 29 C -0.069 4.069 30 C -0.159 4.159 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.236 0.764 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.177 0.823 44 H 0.157 0.843 45 H 0.196 0.804 46 H 0.090 0.910 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 27.680 -17.186 5.442 33.033 hybrid contribution -0.079 1.633 -0.199 1.647 sum 27.601 -15.553 5.243 32.112 Atomic orbital electron populations 1.69702 1.05107 1.25815 1.57639 1.24681 0.95249 0.97232 1.02087 0.86546 0.79249 0.84955 0.77795 1.21097 1.21752 1.20245 1.19059 0.80708 0.94690 1.42934 0.89290 1.42714 1.03989 1.02301 1.91121 1.20714 0.87826 0.89261 0.98430 1.21924 0.96456 0.95606 0.97909 0.90703 1.22175 0.98874 0.97965 0.96695 1.22726 0.98499 0.98413 0.97344 1.22157 0.95765 0.83367 0.95430 0.88276 1.45976 1.09966 1.13183 1.67007 1.18099 0.82112 0.87691 0.77104 1.90565 1.57493 1.39025 1.54247 1.19895 0.93276 0.94176 1.04278 1.21472 0.99732 0.92139 0.95894 1.20852 0.95459 0.97580 0.99260 1.21030 0.92337 0.98105 0.96954 1.18867 0.90977 0.92304 0.98202 1.68060 1.02190 1.32918 1.15519 1.23034 0.99598 0.88611 0.92715 1.22089 0.97151 0.98882 1.01743 1.22679 0.92486 1.00869 0.92563 1.18632 0.93149 0.94883 1.00263 1.22608 0.94974 0.98867 0.99440 0.93078 0.80623 0.95654 0.95521 0.92013 0.90235 0.91324 0.91517 0.76362 0.84790 0.84324 0.84235 0.82300 0.84311 0.80436 0.90963 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.06 27.74 -169.99 -4.71 17.35 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.09 16 7 C -0.24 -6.87 10.47 -15.06 -0.16 -7.02 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 9 N -0.76 -17.60 5.19 -59.91 -0.31 -17.91 16 10 C 0.16 3.01 5.27 -4.04 -0.02 2.99 16 11 C -0.10 -1.40 2.96 -89.51 -0.27 -1.66 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 13 C -0.12 -1.65 6.18 -25.61 -0.16 -1.80 16 14 C -0.13 -1.53 6.51 -25.07 -0.16 -1.69 16 15 C 0.14 1.45 3.27 -65.94 -0.22 1.23 16 16 H 0.10 1.17 7.54 -51.93 -0.39 0.78 16 17 N -0.71 -6.41 5.13 -52.91 -0.27 -6.68 16 18 C 0.56 6.09 7.73 -12.46 -0.10 5.99 16 19 O -0.53 -7.21 13.05 5.29 0.07 -7.14 16 20 C -0.11 -1.08 5.90 -104.66 -0.62 -1.70 16 21 C -0.07 -0.50 9.51 -39.14 -0.37 -0.87 16 22 C -0.11 -0.68 9.92 -40.04 -0.40 -1.08 16 23 C -0.07 -0.51 9.96 -39.38 -0.39 -0.90 16 24 C 0.12 1.21 6.60 -84.88 -0.56 0.65 16 25 N -0.48 -4.92 10.34 -10.99 -0.11 -5.03 16 26 C 0.13 1.07 11.15 -17.47 -0.19 0.88 16 27 C -0.18 -1.45 10.04 -39.74 -0.40 -1.85 16 28 C -0.06 -0.63 9.29 -39.30 -0.37 -1.00 16 29 C -0.07 -0.71 5.76 -106.53 -0.61 -1.33 16 30 C -0.12 -1.28 5.98 -25.08 -0.15 -1.43 16 31 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 32 H 0.36 8.24 5.41 -40.82 -0.22 8.02 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.27 7.61 -51.93 -0.40 0.87 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.40 2.56 6.64 -40.82 -0.27 2.29 16 40 H 0.13 0.55 6.43 -52.49 -0.34 0.21 16 41 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.18 2.02 4.96 -52.50 -0.26 1.76 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.73 7.73 -51.93 -0.40 0.33 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -34.70 380.08 -10.59 -45.30 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.52 Total: 7.53 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -5.24 Total: -10.60 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.08 Total: -58.17 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.07 Total: -7.14 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.70 -10.59 -45.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717877209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.667 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds