Wall clock time and date at job start Tue Mar 31 2020 22:13:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86794 * 119.99786 * 2 1
4 4 H 1.48501 * 109.47071 * 269.99699 * 3 2 1
5 5 H 1.48495 * 109.47349 * 29.99495 * 3 2 1
6 6 H 1.48506 * 109.47396 * 149.99772 * 3 2 1
7 7 C 1.38817 * 120.00040 * 179.97438 * 2 1 3
8 8 H 1.07996 * 119.99725 * 0.02562 * 7 2 1
9 9 N 1.36933 * 119.99678 * 180.02562 * 7 2 1
10 10 C 1.46498 * 119.99893 * 179.97438 * 9 7 2
11 11 C 1.52998 * 109.47509 * 179.97438 * 10 9 7
12 12 H 1.09003 * 110.01940 * 306.39314 * 11 10 9
13 13 C 1.53878 * 110.03083 * 67.83164 * 11 10 9
14 14 C 1.54267 * 106.59616 * 119.28449 * 13 11 10
15 15 C 1.54888 * 104.19756 * 23.61537 * 14 13 11
16 16 H 1.08997 * 110.91724 * 80.44341 * 15 14 13
17 17 N 1.46497 * 110.75847 * 203.74157 * 15 14 13
18 18 C 1.34775 * 120.00068 * 268.32631 * 17 15 14
19 19 O 1.21584 * 119.99857 * 359.97438 * 18 17 15
20 20 C 1.47552 * 120.00092 * 179.97438 * 18 17 15
21 21 C 1.38692 * 120.38677 * 354.05629 * 20 18 17
22 22 C 1.38973 * 120.53117 * 180.02562 * 21 20 18
23 23 C 1.36213 * 121.24255 * 359.76083 * 22 21 20
24 24 C 1.40708 * 120.19797 * 0.46671 * 23 22 21
25 25 N 1.33687 * 120.95066 * 179.81768 * 24 23 22
26 26 C 1.31063 * 121.34414 * 179.72180 * 25 24 23
27 27 C 1.39339 * 121.71374 * 0.03074 * 26 25 24
28 28 C 1.36680 * 119.86069 * 359.97319 * 27 26 25
29 29 C 1.40472 * 118.16828 * 359.97438 * 28 27 26
30 30 C 1.54259 * 110.03719 * 184.99981 * 11 10 9
31 31 H 0.96995 * 120.00066 * 0.02562 * 1 2 3
32 32 H 0.96996 * 120.00397 * 359.97438 * 9 7 2
33 33 H 1.09003 * 109.47155 * 59.99952 * 10 9 7
34 34 H 1.08995 * 109.47453 * 300.00043 * 10 9 7
35 35 H 1.09001 * 110.03369 * 238.56981 * 13 11 10
36 36 H 1.08996 * 110.03203 * 359.95527 * 13 11 10
37 37 H 1.08996 * 110.49097 * 264.93205 * 14 13 11
38 38 H 1.09001 * 110.48577 * 142.28736 * 14 13 11
39 39 H 0.97001 * 120.00014 * 88.32698 * 17 15 14
40 40 H 1.07997 * 119.73255 * 0.04374 * 21 20 18
41 41 H 1.08000 * 119.37688 * 180.02562 * 22 21 20
42 42 H 1.07995 * 119.89865 * 180.28386 * 23 22 21
43 43 H 1.08003 * 119.14410 * 180.02562 * 26 25 24
44 44 H 1.07994 * 120.07008 * 179.97438 * 27 26 25
45 45 H 1.07999 * 120.91461 * 179.97438 * 28 27 26
46 46 H 1.09001 * 110.48750 * 98.43012 * 30 11 10
47 47 H 1.09006 * 110.48919 * 335.78579 * 30 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4403 0.7001
7 6 2.0103 -1.2022 0.0005
8 1 1.4703 -2.1374 0.0005
9 7 3.3796 -1.2021 0.0011
10 6 4.1122 -2.4708 0.0022
11 6 5.6164 -2.1912 0.0020
12 1 5.8723 -1.5264 -0.8231
13 6 6.0349 -1.5574 1.3402
14 6 7.0580 -2.5175 1.9816
15 6 7.6386 -3.3094 0.7838
16 1 8.4035 -2.7292 0.2677
17 7 8.1774 -4.5981 1.2255
18 6 9.4753 -4.7023 1.5735
19 8 10.1991 -3.7268 1.5203
20 6 10.0178 -6.0001 2.0189
21 6 9.1760 -7.0873 2.2005
22 6 9.6837 -8.3109 2.6205
23 6 11.0140 -8.4792 2.8599
24 6 11.9047 -7.4027 2.6936
25 7 13.2127 -7.5501 2.9278
26 6 14.0500 -6.5542 2.7701
27 6 13.6212 -5.2959 2.3526
28 6 12.2963 -5.0788 2.0963
29 6 11.4039 -6.1502 2.2660
30 6 6.3998 -3.5142 -0.1232
31 1 -0.4850 0.8400 -0.0004
32 1 3.8646 -0.3621 0.0007
33 1 3.8492 -3.0430 -0.8875
34 1 3.8486 -3.0418 0.8924
35 1 6.4945 -0.5847 1.1651
36 1 5.1663 -1.4483 1.9895
37 1 6.5627 -3.1915 2.6804
38 1 7.8450 -1.9557 2.4848
39 1 7.6000 -5.3764 1.2676
40 1 8.1175 -6.9822 2.0138
41 1 9.0113 -9.1453 2.7555
42 1 11.3857 -9.4409 3.1812
43 1 15.0996 -6.7130 2.9691
44 1 14.3342 -4.4938 2.2318
45 1 11.9453 -4.1102 1.7723
46 1 6.7064 -3.6798 -1.1560
47 1 5.7982 -4.3493 0.2357
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001717877209.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:13:36
Heat of formation + Delta-G solvation = 30.371745 kcal
Electronic energy + Delta-G solvation = -27920.955791 eV
Core-core repulsion = 24068.505037 eV
Total energy + Delta-G solvation = -3852.450754 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.47568 -39.98229 -38.29660 -37.32623 -35.14708 -33.71288 -33.64973 -31.44939
-30.97699 -30.55841 -29.06546 -27.92459 -25.16527 -24.55697 -23.87355 -23.47195
-21.94552 -21.09124 -20.80790 -19.46247 -18.69484 -17.96481 -17.57312 -17.21624
-16.56638 -16.40377 -15.71388 -15.30822 -15.23302 -14.91897 -14.54904 -14.48824
-14.22885 -13.89525 -13.59004 -13.47855 -13.19745 -13.06715 -12.75907 -12.56174
-12.27712 -12.15930 -12.06600 -11.81077 -11.68963 -11.44171 -10.99054 -10.92684
-10.85949 -10.55389 -10.52197 -10.44812 -10.29679 -10.00946 -9.59821 -9.59158
-9.32215 -9.25014 -8.90095 -8.70810 -7.23544 -5.77812 -3.13058 -0.29302
0.38328 1.35199 2.23277 2.75865 2.85048 3.36774 3.39780 3.44829
3.72963 3.83872 4.12007 4.24207 4.36660 4.43679 4.54628 4.58402
4.64799 4.66253 4.69959 4.86364 4.90411 5.00164 5.29966 5.32762
5.37313 5.43343 5.46409 5.47409 5.53342 5.55214 5.64393 5.70450
5.78220 5.79286 5.87464 5.91886 5.98011 6.01831 6.15654 6.18321
6.27448 6.34995 6.40425 6.49338 6.68296 6.78971 7.15644 7.48332
7.86111 7.98626 8.41446 9.20924 9.93397 10.13478 11.40639
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.028063 B = 0.001925 C = 0.001832
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 997.531877 B =14541.576652 C =15276.997897
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C 0.003 3.997
3 Si 0.884 3.116
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.276 1.276
7 C -0.244 4.244
8 H 0.089 0.911
9 N -0.756 5.756
10 C 0.165 3.835
11 C -0.100 4.100
12 H 0.075 0.925
13 C -0.119 4.119
14 C -0.131 4.131
15 C 0.137 3.863
16 H 0.099 0.901
17 N -0.711 5.711
18 C 0.562 3.438
19 O -0.534 6.534
20 C -0.112 4.112
21 C -0.073 4.073
22 C -0.112 4.112
23 C -0.065 4.065
24 C 0.118 3.882
25 N -0.479 5.479
26 C 0.133 3.867
27 C -0.179 4.179
28 C -0.061 4.061
29 C -0.067 4.067
30 C -0.120 4.120
31 H 0.259 0.741
32 H 0.361 0.639
33 H 0.026 0.974
34 H 0.027 0.973
35 H 0.061 0.939
36 H 0.079 0.921
37 H 0.068 0.932
38 H 0.066 0.934
39 H 0.401 0.599
40 H 0.134 0.866
41 H 0.139 0.861
42 H 0.140 0.860
43 H 0.160 0.840
44 H 0.139 0.861
45 H 0.179 0.821
46 H 0.072 0.928
47 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 27.230 -16.936 5.216 32.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.192 4.192
3 Si 0.715 3.285
4 H -0.211 1.211
5 H -0.218 1.218
6 H -0.202 1.202
7 C -0.374 4.374
8 H 0.107 0.893
9 N -0.401 5.401
10 C 0.038 3.962
11 C -0.119 4.119
12 H 0.093 0.907
13 C -0.157 4.157
14 C -0.170 4.170
15 C 0.033 3.967
16 H 0.117 0.883
17 N -0.361 5.361
18 C 0.350 3.650
19 O -0.413 6.413
20 C -0.116 4.116
21 C -0.092 4.092
22 C -0.132 4.132
23 C -0.084 4.084
24 C -0.003 4.003
25 N -0.187 5.187
26 C -0.040 4.040
27 C -0.199 4.199
28 C -0.086 4.086
29 C -0.069 4.069
30 C -0.159 4.159
31 H 0.069 0.931
32 H 0.194 0.806
33 H 0.043 0.957
34 H 0.045 0.955
35 H 0.080 0.920
36 H 0.098 0.902
37 H 0.087 0.913
38 H 0.085 0.915
39 H 0.236 0.764
40 H 0.152 0.848
41 H 0.157 0.843
42 H 0.158 0.842
43 H 0.177 0.823
44 H 0.157 0.843
45 H 0.196 0.804
46 H 0.090 0.910
47 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 27.680 -17.186 5.442 33.033
hybrid contribution -0.079 1.633 -0.199 1.647
sum 27.601 -15.553 5.243 32.112
Atomic orbital electron populations
1.69702 1.05107 1.25815 1.57639 1.24681 0.95249 0.97232 1.02087
0.86546 0.79249 0.84955 0.77795 1.21097 1.21752 1.20245 1.19059
0.80708 0.94690 1.42934 0.89290 1.42714 1.03989 1.02301 1.91121
1.20714 0.87826 0.89261 0.98430 1.21924 0.96456 0.95606 0.97909
0.90703 1.22175 0.98874 0.97965 0.96695 1.22726 0.98499 0.98413
0.97344 1.22157 0.95765 0.83367 0.95430 0.88276 1.45976 1.09966
1.13183 1.67007 1.18099 0.82112 0.87691 0.77104 1.90565 1.57493
1.39025 1.54247 1.19895 0.93276 0.94176 1.04278 1.21472 0.99732
0.92139 0.95894 1.20852 0.95459 0.97580 0.99260 1.21030 0.92337
0.98105 0.96954 1.18867 0.90977 0.92304 0.98202 1.68060 1.02190
1.32918 1.15519 1.23034 0.99598 0.88611 0.92715 1.22089 0.97151
0.98882 1.01743 1.22679 0.92486 1.00869 0.92563 1.18632 0.93149
0.94883 1.00263 1.22608 0.94974 0.98867 0.99440 0.93078 0.80623
0.95654 0.95521 0.92013 0.90235 0.91324 0.91517 0.76362 0.84790
0.84324 0.84235 0.82300 0.84311 0.80436 0.90963 0.90663
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16
2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16
3 Si 0.88 22.06 27.74 -169.99 -4.71 17.35 16
4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16
5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
6 H -0.28 -6.45 6.52 56.52 0.37 -6.09 16
7 C -0.24 -6.87 10.47 -15.06 -0.16 -7.02 16
8 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16
9 N -0.76 -17.60 5.19 -59.91 -0.31 -17.91 16
10 C 0.16 3.01 5.27 -4.04 -0.02 2.99 16
11 C -0.10 -1.40 2.96 -89.51 -0.27 -1.66 16
12 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16
13 C -0.12 -1.65 6.18 -25.61 -0.16 -1.80 16
14 C -0.13 -1.53 6.51 -25.07 -0.16 -1.69 16
15 C 0.14 1.45 3.27 -65.94 -0.22 1.23 16
16 H 0.10 1.17 7.54 -51.93 -0.39 0.78 16
17 N -0.71 -6.41 5.13 -52.91 -0.27 -6.68 16
18 C 0.56 6.09 7.73 -12.46 -0.10 5.99 16
19 O -0.53 -7.21 13.05 5.29 0.07 -7.14 16
20 C -0.11 -1.08 5.90 -104.66 -0.62 -1.70 16
21 C -0.07 -0.50 9.51 -39.14 -0.37 -0.87 16
22 C -0.11 -0.68 9.92 -40.04 -0.40 -1.08 16
23 C -0.07 -0.51 9.96 -39.38 -0.39 -0.90 16
24 C 0.12 1.21 6.60 -84.88 -0.56 0.65 16
25 N -0.48 -4.92 10.34 -10.99 -0.11 -5.03 16
26 C 0.13 1.07 11.15 -17.47 -0.19 0.88 16
27 C -0.18 -1.45 10.04 -39.74 -0.40 -1.85 16
28 C -0.06 -0.63 9.29 -39.30 -0.37 -1.00 16
29 C -0.07 -0.71 5.76 -106.53 -0.61 -1.33 16
30 C -0.12 -1.28 5.98 -25.08 -0.15 -1.43 16
31 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16
32 H 0.36 8.24 5.41 -40.82 -0.22 8.02 16
33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16
35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
36 H 0.08 1.27 7.61 -51.93 -0.40 0.87 16
37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
39 H 0.40 2.56 6.64 -40.82 -0.27 2.29 16
40 H 0.13 0.55 6.43 -52.49 -0.34 0.21 16
41 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16
42 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16
43 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16
44 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16
45 H 0.18 2.02 4.96 -52.50 -0.26 1.76 16
46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
47 H 0.07 0.73 7.73 -51.93 -0.40 0.33 16
LS Contribution 380.08 15.07 5.73 5.73
Total: -1.00 -34.70 380.08 -10.59 -45.30
By element:
Atomic # 1 Polarization: 14.05 SS G_CDS: -6.52 Total: 7.53 kcal
Atomic # 6 Polarization: -5.36 SS G_CDS: -5.24 Total: -10.60 kcal
Atomic # 7 Polarization: -58.25 SS G_CDS: 0.08 Total: -58.17 kcal
Atomic # 8 Polarization: -7.21 SS G_CDS: 0.07 Total: -7.14 kcal
Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -34.70 -10.59 -45.30 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717877209.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.667 kcal
(2) G-P(sol) polarization free energy of solvation -34.700 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.967 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.295 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.372 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds