Wall clock time and date at job start Tue Mar 31 2020 22:13:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86794 * 119.99786 * 2 1
4 4 H 1.48501 * 109.47071 * 269.99699 * 3 2 1
5 5 H 1.48495 * 109.47349 * 29.99495 * 3 2 1
6 6 H 1.48506 * 109.47396 * 149.99772 * 3 2 1
7 7 C 1.38817 * 120.00040 * 179.97438 * 2 1 3
8 8 H 1.07996 * 119.99725 * 0.02562 * 7 2 1
9 9 N 1.36933 * 119.99678 * 180.02562 * 7 2 1
10 10 C 1.46498 * 119.99893 * 179.97438 * 9 7 2
11 11 C 1.52998 * 109.47509 * 179.97438 * 10 9 7
12 12 H 1.09003 * 110.01940 * 306.39314 * 11 10 9
13 13 C 1.53878 * 110.03083 * 67.83164 * 11 10 9
14 14 C 1.54267 * 106.59616 * 119.28449 * 13 11 10
15 15 C 1.54888 * 104.19756 * 23.61537 * 14 13 11
16 16 H 1.08997 * 110.91724 * 80.44341 * 15 14 13
17 17 N 1.46497 * 110.75847 * 203.74157 * 15 14 13
18 18 C 1.34775 * 120.00068 * 268.32631 * 17 15 14
19 19 O 1.21584 * 119.99857 * 359.97438 * 18 17 15
20 20 C 1.47552 * 120.00092 * 179.97438 * 18 17 15
21 21 C 1.38692 * 120.38677 * 354.05629 * 20 18 17
22 22 C 1.38973 * 120.53117 * 180.02562 * 21 20 18
23 23 C 1.36213 * 121.24255 * 359.76083 * 22 21 20
24 24 C 1.40708 * 120.19797 * 0.46671 * 23 22 21
25 25 N 1.33687 * 120.95066 * 179.81768 * 24 23 22
26 26 C 1.31063 * 121.34414 * 179.72180 * 25 24 23
27 27 C 1.39339 * 121.71374 * 0.03074 * 26 25 24
28 28 C 1.36680 * 119.86069 * 359.97319 * 27 26 25
29 29 C 1.40472 * 118.16828 * 359.97438 * 28 27 26
30 30 C 1.54259 * 110.03719 * 184.99981 * 11 10 9
31 31 H 0.96995 * 120.00066 * 0.02562 * 1 2 3
32 32 H 0.96996 * 120.00397 * 359.97438 * 9 7 2
33 33 H 1.09003 * 109.47155 * 59.99952 * 10 9 7
34 34 H 1.08995 * 109.47453 * 300.00043 * 10 9 7
35 35 H 1.09001 * 110.03369 * 238.56981 * 13 11 10
36 36 H 1.08996 * 110.03203 * 359.95527 * 13 11 10
37 37 H 1.08996 * 110.49097 * 264.93205 * 14 13 11
38 38 H 1.09001 * 110.48577 * 142.28736 * 14 13 11
39 39 H 0.97001 * 120.00014 * 88.32698 * 17 15 14
40 40 H 1.07997 * 119.73255 * 0.04374 * 21 20 18
41 41 H 1.08000 * 119.37688 * 180.02562 * 22 21 20
42 42 H 1.07995 * 119.89865 * 180.28386 * 23 22 21
43 43 H 1.08003 * 119.14410 * 180.02562 * 26 25 24
44 44 H 1.07994 * 120.07008 * 179.97438 * 27 26 25
45 45 H 1.07999 * 120.91461 * 179.97438 * 28 27 26
46 46 H 1.09001 * 110.48750 * 98.43012 * 30 11 10
47 47 H 1.09006 * 110.48919 * 335.78579 * 30 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4403 0.7001
7 6 2.0103 -1.2022 0.0005
8 1 1.4703 -2.1374 0.0005
9 7 3.3796 -1.2021 0.0011
10 6 4.1122 -2.4708 0.0022
11 6 5.6164 -2.1912 0.0020
12 1 5.8723 -1.5264 -0.8231
13 6 6.0349 -1.5574 1.3402
14 6 7.0580 -2.5175 1.9816
15 6 7.6386 -3.3094 0.7838
16 1 8.4035 -2.7292 0.2677
17 7 8.1774 -4.5981 1.2255
18 6 9.4753 -4.7023 1.5735
19 8 10.1991 -3.7268 1.5203
20 6 10.0178 -6.0001 2.0189
21 6 9.1760 -7.0873 2.2005
22 6 9.6837 -8.3109 2.6205
23 6 11.0140 -8.4792 2.8599
24 6 11.9047 -7.4027 2.6936
25 7 13.2127 -7.5501 2.9278
26 6 14.0500 -6.5542 2.7701
27 6 13.6212 -5.2959 2.3526
28 6 12.2963 -5.0788 2.0963
29 6 11.4039 -6.1502 2.2660
30 6 6.3998 -3.5142 -0.1232
31 1 -0.4850 0.8400 -0.0004
32 1 3.8646 -0.3621 0.0007
33 1 3.8492 -3.0430 -0.8875
34 1 3.8486 -3.0418 0.8924
35 1 6.4945 -0.5847 1.1651
36 1 5.1663 -1.4483 1.9895
37 1 6.5627 -3.1915 2.6804
38 1 7.8450 -1.9557 2.4848
39 1 7.6000 -5.3764 1.2676
40 1 8.1175 -6.9822 2.0138
41 1 9.0113 -9.1453 2.7555
42 1 11.3857 -9.4409 3.1812
43 1 15.0996 -6.7130 2.9691
44 1 14.3342 -4.4938 2.2318
45 1 11.9453 -4.1102 1.7723
46 1 6.7064 -3.6798 -1.1560
47 1 5.7982 -4.3493 0.2357
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001717877209.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:13:35
Heat of formation + Delta-G solvation = 7.869584 kcal
Electronic energy + Delta-G solvation = -27921.931558 eV
Core-core repulsion = 24068.505037 eV
Total energy + Delta-G solvation = -3853.426521 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.13013 -40.79073 -39.32114 -37.93213 -36.62493 -34.96767 -34.34426 -33.30912
-31.56022 -31.36767 -30.29022 -28.98991 -26.31368 -25.56296 -24.49316 -24.24822
-23.72318 -21.87076 -21.71143 -20.70965 -19.59456 -19.24855 -18.58527 -17.88773
-17.35664 -17.20623 -16.79327 -16.45957 -16.12197 -15.94878 -15.71094 -15.44318
-15.20411 -14.89352 -14.76129 -14.48856 -14.29981 -14.12467 -13.96521 -13.72591
-13.41254 -13.08007 -12.99404 -12.88876 -12.75566 -12.49667 -12.33700 -12.13715
-12.01543 -11.85264 -11.74699 -11.61060 -11.52979 -11.29826 -11.27094 -10.94985
-10.31778 -10.15195 -9.83667 -9.33582 -9.27202 -8.02455 -5.34968 -0.91020
-0.21189 0.65982 1.37864 1.40649 1.48136 1.62873 1.99320 2.15405
2.48480 3.08755 3.29135 3.30023 3.43619 3.52508 3.64937 3.75092
3.76722 3.79994 3.84988 4.03106 4.05510 4.16232 4.32595 4.40708
4.42705 4.46738 4.50799 4.57559 4.64499 4.75229 4.77158 4.78222
4.92356 4.98700 5.02162 5.06726 5.14309 5.19430 5.23500 5.24995
5.30879 5.38610 5.48623 5.54812 5.58987 5.76990 5.78044 6.22056
6.45115 6.84678 7.09271 7.12194 7.86867 8.05026 9.19080
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.028063 B = 0.001925 C = 0.001832
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 997.531877 B =14541.576652 C =15276.997897
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.984 5.984
2 C -0.066 4.066
3 Si 0.953 3.047
4 H -0.278 1.278
5 H -0.297 1.297
6 H -0.251 1.251
7 C -0.232 4.232
8 H 0.057 0.943
9 N -0.759 5.759
10 C 0.161 3.839
11 C -0.093 4.093
12 H 0.075 0.925
13 C -0.118 4.118
14 C -0.124 4.124
15 C 0.146 3.854
16 H 0.088 0.912
17 N -0.699 5.699
18 C 0.561 3.439
19 O -0.568 6.568
20 C -0.138 4.138
21 C -0.058 4.058
22 C -0.104 4.104
23 C -0.072 4.072
24 C 0.093 3.907
25 N -0.499 5.499
26 C 0.127 3.873
27 C -0.173 4.173
28 C -0.088 4.088
29 C -0.086 4.086
30 C -0.109 4.109
31 H 0.257 0.743
32 H 0.365 0.635
33 H 0.026 0.974
34 H 0.027 0.973
35 H 0.062 0.938
36 H 0.057 0.943
37 H 0.075 0.925
38 H 0.060 0.940
39 H 0.415 0.585
40 H 0.165 0.835
41 H 0.176 0.824
42 H 0.154 0.846
43 H 0.192 0.808
44 H 0.164 0.836
45 H 0.164 0.836
46 H 0.086 0.914
47 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 29.022 -18.307 5.392 34.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.635 5.635
2 C -0.257 4.257
3 Si 0.780 3.220
4 H -0.205 1.205
5 H -0.224 1.224
6 H -0.176 1.176
7 C -0.363 4.363
8 H 0.075 0.925
9 N -0.404 5.404
10 C 0.036 3.964
11 C -0.112 4.112
12 H 0.093 0.907
13 C -0.156 4.156
14 C -0.162 4.162
15 C 0.041 3.959
16 H 0.106 0.894
17 N -0.350 5.350
18 C 0.350 3.650
19 O -0.449 6.449
20 C -0.142 4.142
21 C -0.077 4.077
22 C -0.124 4.124
23 C -0.091 4.091
24 C -0.028 4.028
25 N -0.207 5.207
26 C -0.045 4.045
27 C -0.192 4.192
28 C -0.113 4.113
29 C -0.088 4.088
30 C -0.147 4.147
31 H 0.066 0.934
32 H 0.198 0.802
33 H 0.044 0.956
34 H 0.045 0.955
35 H 0.081 0.919
36 H 0.075 0.925
37 H 0.093 0.907
38 H 0.079 0.921
39 H 0.254 0.746
40 H 0.183 0.817
41 H 0.193 0.807
42 H 0.172 0.828
43 H 0.209 0.791
44 H 0.181 0.819
45 H 0.181 0.819
46 H 0.105 0.895
47 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 29.505 -18.610 5.618 35.333
hybrid contribution -0.645 1.917 -0.233 2.036
sum 28.860 -16.693 5.385 33.772
Atomic orbital electron populations
1.69883 1.07106 1.26614 1.59896 1.25512 0.96128 1.01251 1.02850
0.85430 0.78716 0.79699 0.78105 1.20466 1.22377 1.17552 1.19062
0.82880 0.93437 1.40969 0.92452 1.42752 1.02389 1.04412 1.90874
1.20912 0.90181 0.87154 0.98199 1.21826 0.93673 0.97654 0.98040
0.90699 1.22120 0.98522 0.98702 0.96299 1.22644 0.97738 0.98147
0.97712 1.21914 0.95368 0.83862 0.94724 0.89393 1.45786 1.09646
1.13147 1.66402 1.18344 0.82226 0.87855 0.76591 1.90557 1.58397
1.40258 1.55715 1.19866 0.93384 0.94476 1.06502 1.21882 1.00854
0.91374 0.93542 1.21268 0.95281 0.98261 0.97554 1.21344 0.92915
0.98083 0.96755 1.19232 0.91521 0.92934 0.99083 1.68095 1.02585
1.33827 1.16194 1.23573 1.00851 0.88151 0.91969 1.22377 0.96780
0.99730 1.00358 1.22671 0.93755 1.00568 0.94340 1.18846 0.93925
0.95232 1.00842 1.22520 0.94417 0.97322 1.00437 0.93408 0.80168
0.95592 0.95510 0.91942 0.92454 0.90659 0.92111 0.74612 0.81739
0.80686 0.82799 0.79148 0.81883 0.81946 0.89531 0.89120
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -63.17 13.97 21.65 0.30 -62.87 16
2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16
3 Si 0.95 45.50 27.74 68.60 1.90 47.40 16
4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16
5 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16
6 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16
7 C -0.23 -13.19 10.47 84.04 0.88 -12.31 16
8 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16
9 N -0.76 -34.66 5.19 -343.46 -1.78 -36.44 16
10 C 0.16 5.68 5.27 86.38 0.46 6.13 16
11 C -0.09 -2.41 2.96 -10.07 -0.03 -2.44 16
12 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
13 C -0.12 -3.10 6.18 31.32 0.19 -2.90 16
14 C -0.12 -2.69 6.51 31.67 0.21 -2.48 16
15 C 0.15 2.80 3.27 46.28 0.15 2.95 16
16 H 0.09 1.96 7.54 -2.39 -0.02 1.94 16
17 N -0.70 -11.07 5.13 -439.59 -2.25 -13.33 16
18 C 0.56 11.69 7.73 86.70 0.67 12.36 16
19 O -0.57 -15.55 13.05 -3.98 -0.05 -15.60 16
20 C -0.14 -2.52 5.90 -19.89 -0.12 -2.64 16
21 C -0.06 -0.63 9.51 22.55 0.21 -0.41 16
22 C -0.10 -0.94 9.92 21.97 0.22 -0.72 16
23 C -0.07 -0.99 9.96 22.40 0.22 -0.77 16
24 C 0.09 1.85 6.60 40.27 0.27 2.12 16
25 N -0.50 -9.92 10.34 -188.69 -1.95 -11.88 16
26 C 0.13 1.94 11.15 85.07 0.95 2.89 16
27 C -0.17 -2.75 10.04 22.17 0.22 -2.53 16
28 C -0.09 -1.89 9.29 22.45 0.21 -1.68 16
29 C -0.09 -1.83 5.76 -21.10 -0.12 -1.95 16
30 C -0.11 -2.00 5.98 31.67 0.19 -1.81 16
31 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16
32 H 0.37 16.02 5.41 -92.71 -0.50 15.52 16
33 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16
34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16
35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
36 H 0.06 1.76 7.61 -2.39 -0.02 1.75 16
37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
39 H 0.42 3.92 6.64 -92.71 -0.62 3.31 16
40 H 0.17 0.64 6.43 -2.91 -0.02 0.63 16
41 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16
42 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16
43 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16
44 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16
45 H 0.16 3.95 4.96 -3.20 -0.02 3.93 16
46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16
47 H 0.09 1.43 7.73 -2.38 -0.02 1.41 16
Total: -1.00 -78.18 380.08 1.24 -76.94
By element:
Atomic # 1 Polarization: 25.57 SS G_CDS: -0.17 Total: 25.40 kcal
Atomic # 6 Polarization: -14.87 SS G_CDS: 5.24 Total: -9.62 kcal
Atomic # 7 Polarization: -118.82 SS G_CDS: -5.69 Total: -124.51 kcal
Atomic # 8 Polarization: -15.55 SS G_CDS: -0.05 Total: -15.60 kcal
Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.40 kcal
Total: -78.18 1.24 -76.94 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717877209.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.808 kcal
(2) G-P(sol) polarization free energy of solvation -78.179 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.628 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.938 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.870 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds