Wall clock time and date at job start Tue Mar 31 2020 22:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47196 * 64.99810 * 11 10 9 13 13 N 1.46503 * 109.47269 * 304.99931 * 11 10 9 14 14 C 1.34773 * 120.00358 * 154.99590 * 13 11 10 15 15 O 1.21734 * 119.99949 * 0.02562 * 14 13 11 16 16 C 1.46392 * 120.00253 * 180.02562 * 14 13 11 17 17 N 1.37634 * 126.32672 * 359.69010 * 16 14 13 18 18 H 0.96995 * 125.54933 * 359.97438 * 17 16 14 19 19 C 1.35646 * 108.89887 * 179.82883 * 17 16 14 20 20 C 1.35124 * 109.21982 * 0.44476 * 19 17 16 21 21 C 1.39100 * 126.32765 * 180.02562 * 16 14 13 22 22 C 1.48177 * 126.63546 * 0.04096 * 21 16 14 23 23 C 1.39459 * 120.12725 * 309.71950 * 22 21 16 24 24 C 1.37987 * 119.86629 * 179.76933 * 23 22 21 25 25 C 1.38344 * 120.12815 * 0.48765 * 24 23 22 26 26 C 1.38339 * 120.26872 * 359.78651 * 25 24 23 27 27 C 1.37990 * 120.13342 * 359.95543 * 26 25 24 28 28 C 1.52997 * 109.47504 * 184.99959 * 11 10 9 29 29 C 1.53002 * 117.50022 * 248.74910 * 28 11 10 30 30 C 1.52997 * 117.50076 * 180.08715 * 28 11 10 31 31 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 34 34 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 35 35 H 0.97007 * 119.99919 * 335.00159 * 13 11 10 36 36 H 1.07993 * 125.38968 * 180.17527 * 19 17 16 37 37 H 1.07993 * 126.09885 * 179.73375 * 20 19 17 38 38 H 1.08006 * 120.06432 * 0.02562 * 23 22 21 39 39 H 1.07995 * 119.93521 * 180.25255 * 24 23 22 40 40 H 1.08001 * 119.86479 * 179.76688 * 25 24 23 41 41 H 1.08001 * 119.93708 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.06739 * 180.02562 * 27 26 25 43 43 H 1.09003 * 115.54905 * 34.41348 * 28 11 10 44 44 H 1.09000 * 117.49650 * 359.97438 * 29 28 11 45 45 H 1.09001 * 117.49817 * 145.01411 * 29 28 11 46 46 H 1.08996 * 117.49862 * 214.97497 * 30 28 11 47 47 H 1.08996 * 117.50355 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4981 -4.8134 -0.9338 13 7 0.1441 -4.6764 1.1289 14 6 -1.0803 -5.2372 1.0770 15 8 -1.4217 -5.8632 0.0903 16 6 -1.9998 -5.0935 2.2070 17 7 -1.7486 -4.4229 3.3824 18 1 -0.9244 -3.9618 3.6035 19 6 -2.8425 -4.5090 4.1798 20 6 -3.7961 -5.2304 3.5505 21 6 -3.2864 -5.6150 2.2940 22 6 -3.9857 -6.4199 1.2650 23 6 -4.0383 -5.9746 -0.0556 24 6 -4.6868 -6.7307 -1.0104 25 6 -5.2927 -7.9234 -0.6579 26 6 -5.2487 -8.3676 0.6515 27 6 -4.5986 -7.6227 1.6142 28 6 1.8248 -6.1411 0.1235 29 6 1.8349 -7.0690 -1.0930 30 6 1.0023 -7.4311 0.1394 31 1 -0.4851 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6855 -3.7140 -0.8911 34 1 2.6842 -3.7148 0.8888 35 1 0.4162 -4.1777 1.9152 36 1 -2.9349 -4.0739 5.1639 37 1 -4.7741 -5.4698 3.9407 38 1 -3.5688 -5.0417 -0.3311 39 1 -4.7247 -6.3889 -2.0341 40 1 -5.8023 -8.5100 -1.4079 41 1 -5.7238 -9.2993 0.9209 42 1 -4.5646 -7.9707 2.6360 43 1 2.7234 -6.1095 0.7397 44 1 1.2991 -6.7382 -1.9828 45 1 2.7399 -7.6481 -1.2769 46 1 1.3599 -8.2483 0.7658 47 1 -0.0809 -7.3384 0.0608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723341752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:43 Heat of formation + Delta-G solvation = 73.404463 kcal Electronic energy + Delta-G solvation = -29323.906596 eV Core-core repulsion = 25473.321881 eV Total energy + Delta-G solvation = -3850.584715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28770 -39.34219 -38.58038 -37.00288 -35.05312 -33.53880 -32.41197 -31.23824 -30.69109 -29.90514 -28.72690 -27.66827 -24.18110 -23.31567 -22.31893 -22.20457 -21.88160 -21.52041 -20.60992 -19.97797 -19.21049 -18.71309 -17.17557 -16.51372 -16.10581 -15.56390 -15.31968 -15.05168 -14.78346 -14.69491 -14.35220 -14.10956 -13.76683 -13.43119 -13.28536 -13.18547 -13.09367 -12.86879 -12.82818 -12.70651 -12.19487 -12.08719 -11.69271 -11.21952 -11.06497 -10.99372 -10.94990 -10.85070 -10.83764 -10.25565 -10.15102 -9.97902 -9.77951 -9.67699 -9.23283 -8.97718 -8.73052 -8.62432 -8.41025 -7.85687 -7.03411 -5.84198 -3.14762 1.20539 1.68866 1.83933 2.78812 3.12720 3.34266 3.38061 3.43224 3.43980 3.57534 4.09308 4.15379 4.50138 4.87194 4.87885 5.04239 5.10492 5.11883 5.17495 5.21134 5.28120 5.34766 5.39696 5.44772 5.49643 5.70440 5.73697 5.78892 5.82133 5.85259 5.88477 6.06944 6.11482 6.19471 6.23184 6.30741 6.35125 6.42948 6.53515 6.57447 6.62101 6.71161 6.75755 6.85145 6.88315 6.99678 7.23607 7.38652 7.61448 7.81674 8.33112 8.47755 9.45051 10.00068 10.35726 11.37661 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010625 B = 0.003464 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.664626 B = 8081.944651 C = 9073.917767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.171 3.829 12 H 0.090 0.910 13 N -0.707 5.707 14 C 0.588 3.412 15 O -0.522 6.522 16 C -0.030 4.030 17 N -0.533 5.533 18 H 0.420 0.580 19 C 0.022 3.978 20 C -0.198 4.198 21 C -0.052 4.052 22 C -0.012 4.012 23 C -0.061 4.061 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.132 4.132 27 C -0.108 4.108 28 C -0.164 4.164 29 C -0.170 4.170 30 C -0.183 4.183 31 H 0.256 0.744 32 H 0.386 0.614 33 H 0.037 0.963 34 H 0.023 0.977 35 H 0.396 0.604 36 H 0.170 0.830 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.552 -15.994 6.868 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.067 3.933 12 H 0.108 0.892 13 N -0.357 5.357 14 C 0.375 3.625 15 O -0.399 6.399 16 C -0.144 4.144 17 N -0.128 5.128 18 H 0.258 0.742 19 C -0.114 4.114 20 C -0.222 4.222 21 C -0.061 4.061 22 C -0.012 4.012 23 C -0.079 4.079 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.150 4.150 27 C -0.126 4.126 28 C -0.184 4.184 29 C -0.207 4.207 30 C -0.220 4.220 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.230 0.770 36 H 0.188 0.812 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.482 -16.216 6.148 18.514 hybrid contribution 0.866 1.543 0.606 1.871 sum -5.616 -14.673 6.754 17.101 Atomic orbital electron populations 1.69655 1.05082 1.25877 1.57192 1.24746 0.95500 0.97694 1.02718 0.86272 0.78527 0.83503 0.77868 1.21201 1.21664 1.21291 1.19161 0.91003 0.84035 1.43429 0.91188 1.42344 1.05961 0.99698 1.89653 1.20925 0.93027 0.85102 0.98983 1.20804 0.90007 0.92772 0.89721 0.89170 1.45857 1.14553 1.54520 1.20742 1.16913 0.80787 0.79217 0.85582 1.90789 1.75733 1.41569 1.31828 1.20536 0.97522 1.07048 0.89309 1.42007 1.15258 1.41828 1.13733 0.74191 1.21869 0.87260 1.04419 0.97806 1.20838 1.00460 1.05828 0.95097 1.18510 0.91914 1.00824 0.94811 1.18074 0.97189 0.93793 0.92169 1.21198 0.95334 0.99672 0.91742 1.21035 0.98688 0.95262 0.99286 1.21102 1.00229 0.96657 0.96199 1.20922 1.00882 0.99832 0.93395 1.21085 0.98120 0.94228 0.99187 1.22641 1.01468 0.91500 1.02822 1.22889 1.02008 1.03060 0.92789 1.23273 1.00837 0.97239 1.00685 0.93390 0.78024 0.94569 0.95881 0.77016 0.81230 0.83967 0.86000 0.86402 0.86729 0.86589 0.86454 0.88036 0.88708 0.89275 0.90032 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.73 -17.62 5.43 -59.91 -0.33 -17.95 16 10 C 0.15 2.81 5.80 -4.04 -0.02 2.79 16 11 C 0.17 2.84 2.43 -67.93 -0.17 2.67 16 12 H 0.09 1.70 7.33 -51.93 -0.38 1.32 16 13 N -0.71 -11.10 4.49 -55.20 -0.25 -11.34 16 14 C 0.59 9.71 7.09 -12.98 -0.09 9.62 16 15 O -0.52 -9.57 10.44 5.16 0.05 -9.51 16 16 C -0.03 -0.45 7.07 -81.66 -0.58 -1.02 16 17 N -0.53 -6.33 5.98 -9.24 -0.06 -6.39 16 18 H 0.42 4.20 8.18 -40.82 -0.33 3.86 16 19 C 0.02 0.23 11.86 -16.97 -0.20 0.03 16 20 C -0.20 -2.38 10.73 -39.67 -0.43 -2.80 16 21 C -0.05 -0.76 5.67 -104.47 -0.59 -1.35 16 22 C -0.01 -0.17 5.27 -104.91 -0.55 -0.73 16 23 C -0.06 -0.96 7.63 -39.22 -0.30 -1.26 16 24 C -0.12 -1.72 10.03 -39.63 -0.40 -2.12 16 25 C -0.12 -1.50 10.04 -39.51 -0.40 -1.90 16 26 C -0.13 -1.56 10.03 -39.64 -0.40 -1.96 16 27 C -0.11 -1.39 9.74 -39.22 -0.38 -1.78 16 28 C -0.16 -2.33 5.36 -90.62 -0.49 -2.82 16 29 C -0.17 -2.26 10.18 -26.69 -0.27 -2.53 16 30 C -0.18 -2.59 9.74 -26.69 -0.26 -2.85 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.39 9.97 7.33 -40.82 -0.30 9.67 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.40 5.81 7.73 -40.82 -0.32 5.49 16 36 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.12 2.11 7.35 -52.48 -0.39 1.73 16 39 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.10 1.34 8.11 -51.93 -0.42 0.92 16 44 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.12 1.97 5.01 -51.93 -0.26 1.71 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -31.91 390.60 -11.34 -43.25 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -6.59 Total: 21.07 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -5.77 Total: -15.15 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.10 Total: -62.39 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.05 Total: -9.51 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.91 -11.34 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723341752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.655 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds