Wall clock time and date at job start Tue Mar 31 2020 22:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47196 * 64.99810 * 11 10 9 13 13 N 1.46503 * 109.47269 * 304.99931 * 11 10 9 14 14 C 1.34773 * 120.00358 * 154.99590 * 13 11 10 15 15 O 1.21734 * 119.99949 * 0.02562 * 14 13 11 16 16 C 1.46392 * 120.00253 * 180.02562 * 14 13 11 17 17 N 1.37634 * 126.32672 * 359.69010 * 16 14 13 18 18 H 0.96995 * 125.54933 * 359.97438 * 17 16 14 19 19 C 1.35646 * 108.89887 * 179.82883 * 17 16 14 20 20 C 1.35124 * 109.21982 * 0.44476 * 19 17 16 21 21 C 1.39100 * 126.32765 * 180.02562 * 16 14 13 22 22 C 1.48177 * 126.63546 * 0.04096 * 21 16 14 23 23 C 1.39459 * 120.12725 * 309.71950 * 22 21 16 24 24 C 1.37987 * 119.86629 * 179.76933 * 23 22 21 25 25 C 1.38344 * 120.12815 * 0.48765 * 24 23 22 26 26 C 1.38339 * 120.26872 * 359.78651 * 25 24 23 27 27 C 1.37990 * 120.13342 * 359.95543 * 26 25 24 28 28 C 1.52997 * 109.47504 * 184.99959 * 11 10 9 29 29 C 1.53002 * 117.50022 * 248.74910 * 28 11 10 30 30 C 1.52997 * 117.50076 * 180.08715 * 28 11 10 31 31 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 34 34 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 35 35 H 0.97007 * 119.99919 * 335.00159 * 13 11 10 36 36 H 1.07993 * 125.38968 * 180.17527 * 19 17 16 37 37 H 1.07993 * 126.09885 * 179.73375 * 20 19 17 38 38 H 1.08006 * 120.06432 * 0.02562 * 23 22 21 39 39 H 1.07995 * 119.93521 * 180.25255 * 24 23 22 40 40 H 1.08001 * 119.86479 * 179.76688 * 25 24 23 41 41 H 1.08001 * 119.93708 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.06739 * 180.02562 * 27 26 25 43 43 H 1.09003 * 115.54905 * 34.41348 * 28 11 10 44 44 H 1.09000 * 117.49650 * 359.97438 * 29 28 11 45 45 H 1.09001 * 117.49817 * 145.01411 * 29 28 11 46 46 H 1.08996 * 117.49862 * 214.97497 * 30 28 11 47 47 H 1.08996 * 117.50355 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4981 -4.8134 -0.9338 13 7 0.1441 -4.6764 1.1289 14 6 -1.0803 -5.2372 1.0770 15 8 -1.4217 -5.8632 0.0903 16 6 -1.9998 -5.0935 2.2070 17 7 -1.7486 -4.4229 3.3824 18 1 -0.9244 -3.9618 3.6035 19 6 -2.8425 -4.5090 4.1798 20 6 -3.7961 -5.2304 3.5505 21 6 -3.2864 -5.6150 2.2940 22 6 -3.9857 -6.4199 1.2650 23 6 -4.0383 -5.9746 -0.0556 24 6 -4.6868 -6.7307 -1.0104 25 6 -5.2927 -7.9234 -0.6579 26 6 -5.2487 -8.3676 0.6515 27 6 -4.5986 -7.6227 1.6142 28 6 1.8248 -6.1411 0.1235 29 6 1.8349 -7.0690 -1.0930 30 6 1.0023 -7.4311 0.1394 31 1 -0.4851 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6855 -3.7140 -0.8911 34 1 2.6842 -3.7148 0.8888 35 1 0.4162 -4.1777 1.9152 36 1 -2.9349 -4.0739 5.1639 37 1 -4.7741 -5.4698 3.9407 38 1 -3.5688 -5.0417 -0.3311 39 1 -4.7247 -6.3889 -2.0341 40 1 -5.8023 -8.5100 -1.4079 41 1 -5.7238 -9.2993 0.9209 42 1 -4.5646 -7.9707 2.6360 43 1 2.7234 -6.1095 0.7397 44 1 1.2991 -6.7382 -1.9828 45 1 2.7399 -7.6481 -1.2769 46 1 1.3599 -8.2483 0.7658 47 1 -0.0809 -7.3384 0.0608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723341752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:42 Heat of formation + Delta-G solvation = 54.890398 kcal Electronic energy + Delta-G solvation = -29324.709426 eV Core-core repulsion = 25473.321881 eV Total energy + Delta-G solvation = -3851.387545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30699 -40.58007 -39.58977 -38.26861 -36.65133 -35.07080 -33.51367 -32.98763 -31.72085 -31.01432 -29.97779 -29.01485 -26.00133 -24.48578 -23.41651 -23.33054 -23.09589 -22.89291 -21.64245 -21.18993 -20.29962 -19.88523 -19.07873 -17.60646 -17.29238 -16.84321 -16.63413 -16.48201 -16.02934 -15.77080 -15.68823 -15.31394 -15.11045 -14.98106 -14.64750 -14.38739 -14.25968 -14.15611 -13.94321 -13.64935 -13.57540 -13.21274 -13.12530 -12.78214 -12.73741 -12.50329 -12.31014 -12.14739 -11.97702 -11.87868 -11.86226 -11.33367 -11.14723 -11.00923 -10.89134 -10.25054 -10.00664 -9.67925 -9.38003 -9.05176 -8.90617 -7.96627 -5.27120 0.13034 0.64252 0.81143 1.46358 1.49027 1.55146 1.84887 2.06821 2.23945 2.38345 2.53621 3.00990 3.05381 3.37366 3.54906 3.86436 3.93770 4.00908 4.09571 4.13815 4.15414 4.20440 4.31024 4.34188 4.36227 4.42686 4.47497 4.59661 4.70756 4.79813 4.80887 4.83161 4.86219 5.02324 5.07868 5.17356 5.23914 5.26431 5.29254 5.36074 5.47213 5.53244 5.59125 5.70484 5.74940 5.83131 5.95684 6.22211 6.22724 6.48090 6.62247 7.23121 7.30574 8.02747 8.27395 9.25688 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010625 B = 0.003464 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.664626 B = 8081.944651 C = 9073.917767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.151 3.849 11 C 0.182 3.818 12 H 0.059 0.941 13 N -0.704 5.704 14 C 0.583 3.417 15 O -0.548 6.548 16 C -0.067 4.067 17 N -0.528 5.528 18 H 0.428 0.572 19 C 0.045 3.955 20 C -0.212 4.212 21 C -0.065 4.065 22 C -0.030 4.030 23 C -0.087 4.087 24 C -0.139 4.139 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.112 4.112 28 C -0.164 4.164 29 C -0.162 4.162 30 C -0.182 4.182 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.037 0.963 34 H 0.041 0.959 35 H 0.401 0.599 36 H 0.214 0.786 37 H 0.163 0.837 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.137 0.863 43 H 0.121 0.879 44 H 0.081 0.919 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 -17.371 8.738 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.802 3.198 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.078 3.922 12 H 0.077 0.923 13 N -0.354 5.354 14 C 0.372 3.628 15 O -0.427 6.427 16 C -0.181 4.181 17 N -0.124 5.124 18 H 0.267 0.733 19 C -0.091 4.091 20 C -0.236 4.236 21 C -0.074 4.074 22 C -0.030 4.030 23 C -0.106 4.106 24 C -0.157 4.157 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.130 4.130 28 C -0.183 4.183 29 C -0.200 4.200 30 C -0.219 4.219 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.235 0.765 36 H 0.231 0.769 37 H 0.181 0.819 38 H 0.106 0.894 39 H 0.141 0.859 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.155 0.845 43 H 0.139 0.861 44 H 0.099 0.901 45 H 0.134 0.866 46 H 0.119 0.881 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.879 -17.614 8.026 20.230 hybrid contribution 0.652 1.900 0.027 2.009 sum -5.227 -15.715 8.053 18.415 Atomic orbital electron populations 1.69829 1.06644 1.26053 1.59217 1.25538 0.96258 1.01016 1.03513 0.85228 0.77150 0.79207 0.78230 1.20728 1.22502 1.19975 1.19585 0.91575 0.85052 1.41572 0.90304 1.42503 1.05561 1.00870 1.89583 1.21037 0.93292 0.83827 0.99455 1.20535 0.89405 0.93385 0.88906 0.92325 1.45762 1.14445 1.54656 1.20524 1.17198 0.80950 0.78786 0.85893 1.90769 1.76165 1.42776 1.32998 1.20360 0.97860 1.09648 0.90225 1.42044 1.16090 1.41303 1.12965 0.73307 1.22607 0.85765 1.02182 0.98593 1.21158 1.01812 1.06372 0.94220 1.18858 0.92000 1.00715 0.95836 1.18294 0.97892 0.94959 0.91890 1.21057 0.97037 0.99298 0.93167 1.21220 0.99050 0.96159 0.99282 1.21443 0.99511 0.95879 0.97341 1.21352 0.99754 1.00595 0.92826 1.21361 0.97652 0.93444 1.00549 1.22559 1.01726 0.90044 1.03995 1.22968 1.02598 1.02506 0.91879 1.23170 0.99428 0.97640 1.01652 0.94145 0.79475 0.94521 0.94092 0.76470 0.76909 0.81900 0.89384 0.85906 0.83834 0.83181 0.84503 0.86090 0.90075 0.86573 0.88122 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.46 13.06 21.65 0.28 -58.18 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.25 -13.28 9.99 84.03 0.84 -12.44 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -36.40 5.43 -343.45 -1.87 -38.27 16 10 C 0.15 5.74 5.80 86.38 0.50 6.24 16 11 C 0.18 6.23 2.43 44.99 0.11 6.34 16 12 H 0.06 2.37 7.33 -2.39 -0.02 2.36 16 13 N -0.70 -23.04 4.49 -446.76 -2.01 -25.05 16 14 C 0.58 20.53 7.09 86.37 0.61 21.14 16 15 O -0.55 -21.82 10.44 -4.46 -0.05 -21.87 16 16 C -0.07 -2.09 7.07 40.56 0.29 -1.80 16 17 N -0.53 -12.31 5.98 -183.14 -1.10 -13.40 16 18 H 0.43 8.32 8.18 -92.71 -0.76 7.56 16 19 C 0.04 0.84 11.86 83.39 0.99 1.83 16 20 C -0.21 -4.84 10.73 22.21 0.24 -4.60 16 21 C -0.06 -1.95 5.67 -19.77 -0.11 -2.06 16 22 C -0.03 -0.92 5.27 -20.05 -0.11 -1.03 16 23 C -0.09 -2.97 7.63 22.50 0.17 -2.79 16 24 C -0.14 -4.03 10.03 22.24 0.22 -3.80 16 25 C -0.12 -2.88 10.04 22.32 0.22 -2.66 16 26 C -0.13 -2.77 10.03 22.23 0.22 -2.54 16 27 C -0.11 -2.80 9.74 22.50 0.22 -2.58 16 28 C -0.16 -4.54 5.36 -10.80 -0.06 -4.60 16 29 C -0.16 -4.19 10.18 30.62 0.31 -3.88 16 30 C -0.18 -5.07 9.74 30.62 0.30 -4.78 16 31 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.37 20.07 7.33 -92.71 -0.68 19.39 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.40 12.07 7.73 -92.70 -0.72 11.36 16 36 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 38 H 0.09 3.48 7.35 -2.91 -0.02 3.46 16 39 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 42 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 43 H 0.12 2.92 8.11 -2.39 -0.02 2.90 16 44 H 0.08 2.32 8.05 -2.39 -0.02 2.30 16 45 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.09 3.18 5.01 -2.39 -0.01 3.17 16 Total: -1.00 -71.84 390.60 1.60 -70.24 By element: Atomic # 1 Polarization: 58.00 SS G_CDS: -1.14 Total: 56.87 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.44 Total: -17.51 kcal Atomic # 7 Polarization: -130.22 SS G_CDS: -4.69 Total: -134.91 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -71.84 1.60 -70.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723341752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.130 kcal (2) G-P(sol) polarization free energy of solvation -71.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds