Wall clock time and date at job start Tue Mar 31 2020 22:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47429 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47140 * 300.00519 * 3 2 1 6 6 H 1.48494 * 109.47207 * 60.00430 * 3 2 1 7 7 C 1.38807 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99958 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99925 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99761 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47129 * 175.04231 * 10 9 7 12 12 N 1.46501 * 109.47100 * 305.42344 * 11 10 9 13 13 C 1.34780 * 120.00096 * 303.91699 * 12 11 10 14 14 O 1.21278 * 119.99617 * 354.66335 * 13 12 11 15 15 C 1.50694 * 119.99869 * 174.66666 * 13 12 11 16 16 N 1.46501 * 109.47259 * 179.97438 * 15 13 12 17 17 C 1.36378 * 125.96291 * 89.99613 * 16 15 13 18 18 O 1.35622 * 125.98872 * 0.02562 * 17 16 15 19 19 N 1.30912 * 108.02141 * 179.74445 * 17 16 15 20 20 N 1.40115 * 107.93821 * 0.24209 * 19 17 16 21 21 C 1.30902 * 107.94216 * 0.02562 * 20 19 17 22 22 O 1.35626 * 125.98595 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.47010 * 65.42320 * 11 10 9 24 24 C 1.52996 * 109.46995 * 179.97438 * 23 11 10 25 25 C 1.52995 * 109.47456 * 300.00060 * 24 23 11 26 26 C 1.53002 * 109.47068 * 59.99985 * 25 24 23 27 27 C 1.52996 * 109.47267 * 300.00026 * 26 25 24 28 28 H 0.97000 * 119.99594 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00498 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47106 * 55.04752 * 10 9 7 31 31 H 1.08994 * 109.47717 * 295.04548 * 10 9 7 32 32 H 0.96999 * 120.00040 * 123.91017 * 12 11 10 33 33 H 1.08995 * 109.47249 * 60.00098 * 15 13 12 34 34 H 1.09005 * 109.47294 * 299.99815 * 15 13 12 35 35 H 0.96702 * 114.00201 * 269.71746 * 18 17 16 36 36 H 0.96702 * 114.00116 * 89.97784 * 22 21 20 37 37 H 1.08999 * 109.46949 * 300.00236 * 23 11 10 38 38 H 1.08997 * 109.46988 * 59.99955 * 23 11 10 39 39 H 1.09003 * 109.46976 * 179.97438 * 24 23 11 40 40 H 1.09006 * 109.47096 * 60.00023 * 24 23 11 41 41 H 1.08997 * 109.46954 * 300.00285 * 25 24 23 42 42 H 1.08997 * 109.47487 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.46949 * 180.02562 * 26 25 24 44 44 H 1.08997 * 109.46988 * 60.00321 * 26 25 24 45 45 H 1.08997 * 109.47357 * 300.00069 * 27 26 25 46 46 H 1.08996 * 109.47409 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0686 -4.8171 0.1232 12 7 0.2303 -4.6186 1.3082 13 6 0.8011 -4.4615 2.5190 14 8 2.0016 -4.5808 2.6434 15 6 -0.0523 -4.1378 3.7180 16 7 0.7982 -4.0190 4.9050 17 6 1.3914 -2.8761 5.3541 18 8 1.2969 -1.6507 4.7805 19 7 2.0630 -3.1678 6.4392 20 7 1.9018 -4.5365 6.6917 21 6 1.1378 -5.0327 5.7517 22 8 0.7470 -6.3268 5.6427 23 6 0.1842 -4.8697 -1.1242 24 6 -0.8048 -6.0303 -0.9996 25 6 -0.0340 -7.3451 -0.8651 26 6 0.8504 -7.2925 0.3824 27 6 1.8395 -6.1319 0.2578 28 1 -0.4849 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.7503 -3.6774 0.8401 31 1 2.6158 -3.7535 -0.9331 32 1 -0.7356 -4.6000 1.2213 33 1 -0.7803 -4.9343 3.8715 34 1 -0.5743 -3.1960 3.5489 35 1 1.9838 -1.4695 4.1245 36 1 -0.0811 -6.5275 6.1001 37 1 -0.3646 -3.9328 -1.2202 38 1 0.8080 -5.0174 -2.0058 39 1 -1.4351 -6.0676 -1.8881 40 1 -1.4286 -5.8831 -0.1179 41 1 0.5898 -7.4923 -1.7467 42 1 -0.7385 -8.1719 -0.7758 43 1 1.3999 -8.2290 0.4779 44 1 0.2266 -7.1452 1.2640 45 1 2.4633 -6.2791 -0.6239 46 1 2.4692 -6.0941 1.1466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725231039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:13 Heat of formation + Delta-G solvation = -12.454968 kcal Electronic energy + Delta-G solvation = -31870.319517 eV Core-core repulsion = 27605.162394 eV Total energy + Delta-G solvation = -4265.157122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.22986 -40.44570 -38.11183 -37.92611 -36.95856 -34.81024 -34.18419 -33.40035 -31.48089 -30.77551 -29.57912 -29.48754 -27.68257 -25.38746 -23.11834 -22.70349 -22.54534 -22.11712 -21.25765 -20.52668 -19.06061 -18.79592 -18.61894 -17.57192 -17.27867 -16.68267 -16.19600 -15.56307 -15.32936 -15.13434 -15.03716 -14.44846 -14.27817 -14.01132 -13.68930 -13.36542 -13.31122 -13.10656 -12.87930 -12.66109 -12.38068 -12.30279 -12.24443 -12.09157 -11.78733 -11.39356 -11.34254 -11.07820 -10.95827 -10.88528 -10.63471 -10.52774 -10.47785 -10.26689 -10.14310 -9.93910 -9.76071 -9.34907 -9.32491 -8.89485 -8.72582 -6.96753 -5.85381 -3.12121 1.53146 1.77697 2.30243 2.69279 3.22458 3.29404 3.38172 3.46226 3.46815 3.87743 4.40929 4.52370 4.59568 4.78679 4.81637 4.84237 4.88621 5.21067 5.23244 5.26089 5.29988 5.46918 5.50978 5.54261 5.59533 5.68965 5.73032 5.75496 6.00196 6.03993 6.11280 6.12656 6.19557 6.21214 6.28566 6.41291 6.46310 6.55314 6.76746 6.95018 7.04670 7.41909 7.64465 7.66739 7.95234 8.34017 8.34241 9.46300 10.02689 10.39070 11.37366 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007592 B = 0.006000 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.233387 B = 4665.677203 C = 7681.929693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 0.902 3.098 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.233 4.233 8 H 0.068 0.932 9 N -0.725 5.725 10 C 0.139 3.861 11 C 0.180 3.820 12 N -0.701 5.701 13 C 0.511 3.489 14 O -0.518 6.518 15 C 0.080 3.920 16 N -0.493 5.493 17 C 0.428 3.572 18 O -0.436 6.436 19 N -0.302 5.302 20 N -0.301 5.301 21 C 0.410 3.590 22 O -0.434 6.434 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.112 4.112 27 C -0.128 4.128 28 H 0.254 0.746 29 H 0.381 0.619 30 H 0.047 0.953 31 H 0.020 0.980 32 H 0.396 0.604 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.424 0.576 36 H 0.406 0.594 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 -15.470 2.932 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.365 4.365 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.011 3.989 11 C 0.094 3.906 12 N -0.353 5.353 13 C 0.294 3.706 14 O -0.394 6.394 15 C -0.048 4.048 16 N -0.213 5.213 17 C 0.118 3.882 18 O -0.237 6.237 19 N -0.146 5.146 20 N -0.145 5.145 21 C 0.099 3.901 22 O -0.233 6.233 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.149 4.149 27 C -0.167 4.167 28 H 0.063 0.937 29 H 0.215 0.785 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.231 0.769 33 H 0.136 0.864 34 H 0.151 0.849 35 H 0.285 0.715 36 H 0.263 0.737 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.617 -15.268 4.294 16.519 hybrid contribution -1.350 0.924 -1.633 2.312 sum -5.967 -14.344 2.661 15.762 Atomic orbital electron populations 1.69643 1.04994 1.25465 1.58236 1.24657 0.95482 0.97438 1.03222 0.86184 0.78894 0.84288 0.77263 1.20636 1.21952 1.21803 1.19253 0.91022 0.84100 1.42104 0.91392 1.42223 1.05518 0.99670 1.89522 1.21098 0.93622 0.85167 0.98998 1.20594 0.91113 0.95256 0.83631 1.45781 1.09929 1.73250 1.06338 1.20216 0.88860 0.77262 0.84224 1.90712 1.14499 1.49357 1.84807 1.21763 0.92853 1.06865 0.83319 1.46580 1.42608 1.08395 1.23700 1.21401 0.93641 0.81134 0.92020 1.84879 1.56878 1.22471 1.59511 1.78369 1.19182 1.03229 1.13855 1.78264 1.17548 0.99899 1.18757 1.21172 0.97036 0.82121 0.89726 1.85005 1.45864 1.15948 1.76523 1.21793 0.97963 0.99099 0.96918 1.21553 0.97814 0.94782 1.01483 1.21555 0.98513 0.97150 0.98425 1.21439 0.97699 0.98035 0.97768 1.21905 0.98144 0.93236 1.03389 0.93660 0.78494 0.93556 0.96229 0.76915 0.86428 0.84930 0.71532 0.73682 0.90125 0.90494 0.91889 0.92369 0.92059 0.92511 0.92495 0.92373 0.91423 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.17 13.06 55.49 0.72 -25.44 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.90 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.15 9.99 -15.06 -0.15 -6.30 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -16.51 5.19 -59.91 -0.31 -16.82 16 10 C 0.14 2.69 4.79 -4.04 -0.02 2.67 16 11 C 0.18 2.56 0.32 -131.81 -0.04 2.52 16 12 N -0.70 -8.95 3.58 -47.60 -0.17 -9.12 16 13 C 0.51 7.33 7.31 -10.99 -0.08 7.25 16 14 O -0.52 -9.52 12.73 5.56 0.07 -9.45 16 15 C 0.08 0.90 6.50 -5.20 -0.03 0.86 16 16 N -0.49 -6.85 2.25 -121.35 -0.27 -7.13 16 17 C 0.43 6.95 9.15 -88.80 -0.81 6.14 16 18 O -0.44 -6.81 13.58 -18.56 -0.25 -7.06 16 19 N -0.30 -5.43 12.72 29.66 0.38 -5.06 16 20 N -0.30 -5.11 12.72 29.65 0.38 -4.73 16 21 C 0.41 5.75 9.15 -88.81 -0.81 4.93 16 22 O -0.43 -4.42 13.58 -18.58 -0.25 -4.67 16 23 C -0.12 -1.53 4.67 -26.73 -0.12 -1.66 16 24 C -0.12 -1.16 5.75 -26.74 -0.15 -1.31 16 25 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 26 C -0.11 -1.19 5.77 -26.73 -0.15 -1.34 16 27 C -0.13 -1.70 4.58 -26.73 -0.12 -1.82 16 28 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.38 8.87 6.46 -40.82 -0.26 8.60 16 30 H 0.05 1.01 6.25 -51.93 -0.32 0.69 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.40 4.09 7.20 -40.82 -0.29 3.80 16 33 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.13 1.46 8.14 -51.93 -0.42 1.03 16 35 H 0.42 5.87 9.06 45.56 0.41 6.29 16 36 H 0.41 1.56 9.06 45.56 0.41 1.97 16 37 H 0.08 1.21 7.10 -51.93 -0.37 0.84 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.51 6.79 -51.93 -0.35 0.16 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.62 7.61 -51.93 -0.39 0.23 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.08 1.30 6.28 -51.93 -0.33 0.98 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -35.35 374.90 -6.69 -42.05 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -4.85 Total: 14.88 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -2.76 Total: 10.25 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: 0.73 Total: -68.30 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.43 Total: -21.18 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.35 -6.69 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725231039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.591 kcal (2) G-P(sol) polarization free energy of solvation -35.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds