Wall clock time and date at job start Tue Mar 31 2020 22:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47429 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47140 * 300.00519 * 3 2 1 6 6 H 1.48494 * 109.47207 * 60.00430 * 3 2 1 7 7 C 1.38807 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99958 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99925 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99761 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47129 * 175.04231 * 10 9 7 12 12 N 1.46501 * 109.47100 * 305.42344 * 11 10 9 13 13 C 1.34780 * 120.00096 * 303.91699 * 12 11 10 14 14 O 1.21278 * 119.99617 * 354.66335 * 13 12 11 15 15 C 1.50694 * 119.99869 * 174.66666 * 13 12 11 16 16 N 1.46501 * 109.47259 * 179.97438 * 15 13 12 17 17 C 1.36378 * 125.96291 * 89.99613 * 16 15 13 18 18 O 1.35622 * 125.98872 * 0.02562 * 17 16 15 19 19 N 1.30912 * 108.02141 * 179.74445 * 17 16 15 20 20 N 1.40115 * 107.93821 * 0.24209 * 19 17 16 21 21 C 1.30902 * 107.94216 * 0.02562 * 20 19 17 22 22 O 1.35626 * 125.98595 * 180.02562 * 21 20 19 23 23 C 1.53002 * 109.47010 * 65.42320 * 11 10 9 24 24 C 1.52996 * 109.46995 * 179.97438 * 23 11 10 25 25 C 1.52995 * 109.47456 * 300.00060 * 24 23 11 26 26 C 1.53002 * 109.47068 * 59.99985 * 25 24 23 27 27 C 1.52996 * 109.47267 * 300.00026 * 26 25 24 28 28 H 0.97000 * 119.99594 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00498 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47106 * 55.04752 * 10 9 7 31 31 H 1.08994 * 109.47717 * 295.04548 * 10 9 7 32 32 H 0.96999 * 120.00040 * 123.91017 * 12 11 10 33 33 H 1.08995 * 109.47249 * 60.00098 * 15 13 12 34 34 H 1.09005 * 109.47294 * 299.99815 * 15 13 12 35 35 H 0.96702 * 114.00201 * 269.71746 * 18 17 16 36 36 H 0.96702 * 114.00116 * 89.97784 * 22 21 20 37 37 H 1.08999 * 109.46949 * 300.00236 * 23 11 10 38 38 H 1.08997 * 109.46988 * 59.99955 * 23 11 10 39 39 H 1.09003 * 109.46976 * 179.97438 * 24 23 11 40 40 H 1.09006 * 109.47096 * 60.00023 * 24 23 11 41 41 H 1.08997 * 109.46954 * 300.00285 * 25 24 23 42 42 H 1.08997 * 109.47487 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.46949 * 180.02562 * 26 25 24 44 44 H 1.08997 * 109.46988 * 60.00321 * 26 25 24 45 45 H 1.08997 * 109.47357 * 300.00069 * 27 26 25 46 46 H 1.08996 * 109.47409 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0686 -4.8171 0.1232 12 7 0.2303 -4.6186 1.3082 13 6 0.8011 -4.4615 2.5190 14 8 2.0016 -4.5808 2.6434 15 6 -0.0523 -4.1378 3.7180 16 7 0.7982 -4.0190 4.9050 17 6 1.3914 -2.8761 5.3541 18 8 1.2969 -1.6507 4.7805 19 7 2.0630 -3.1678 6.4392 20 7 1.9018 -4.5365 6.6917 21 6 1.1378 -5.0327 5.7517 22 8 0.7470 -6.3268 5.6427 23 6 0.1842 -4.8697 -1.1242 24 6 -0.8048 -6.0303 -0.9996 25 6 -0.0340 -7.3451 -0.8651 26 6 0.8504 -7.2925 0.3824 27 6 1.8395 -6.1319 0.2578 28 1 -0.4849 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.7503 -3.6774 0.8401 31 1 2.6158 -3.7535 -0.9331 32 1 -0.7356 -4.6000 1.2213 33 1 -0.7803 -4.9343 3.8715 34 1 -0.5743 -3.1960 3.5489 35 1 1.9838 -1.4695 4.1245 36 1 -0.0811 -6.5275 6.1001 37 1 -0.3646 -3.9328 -1.2202 38 1 0.8080 -5.0174 -2.0058 39 1 -1.4351 -6.0676 -1.8881 40 1 -1.4286 -5.8831 -0.1179 41 1 0.5898 -7.4923 -1.7467 42 1 -0.7385 -8.1719 -0.7758 43 1 1.3999 -8.2290 0.4779 44 1 0.2266 -7.1452 1.2640 45 1 2.4633 -6.2791 -0.6239 46 1 2.4692 -6.0941 1.1466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725231039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:12 Heat of formation + Delta-G solvation = -44.693200 kcal Electronic energy + Delta-G solvation = -31871.717471 eV Core-core repulsion = 27605.162394 eV Total energy + Delta-G solvation = -4266.555077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.36542 -41.59536 -39.13810 -39.04013 -38.04147 -36.40225 -35.32277 -34.71221 -33.15330 -31.73474 -31.01100 -30.67523 -28.74046 -27.02053 -24.68637 -23.83685 -23.63696 -23.25677 -22.40285 -21.60401 -20.14728 -19.82300 -19.74156 -19.20970 -18.66101 -17.78798 -17.27229 -16.78931 -16.63350 -16.41555 -16.08601 -16.03517 -15.37108 -15.19457 -14.94460 -14.69450 -14.57049 -14.52889 -13.92786 -13.91346 -13.58294 -13.38394 -13.33577 -13.13451 -13.05552 -12.87916 -12.72915 -12.56541 -12.54087 -12.07288 -12.00261 -11.88071 -11.71497 -11.60645 -11.43578 -11.14123 -11.02557 -10.97746 -10.53094 -10.40607 -9.91762 -8.93179 -7.94783 -5.19617 0.38929 0.76106 1.12250 1.44771 1.48335 1.55271 1.58339 2.14218 2.23467 2.55201 2.85797 3.38507 3.48746 3.56915 3.73684 3.86333 3.88975 4.04405 4.10806 4.15154 4.25666 4.27011 4.47443 4.50793 4.60572 4.62643 4.66675 4.78981 4.86203 4.89191 5.11718 5.15137 5.19929 5.22984 5.26410 5.31766 5.39094 5.47996 5.51176 5.54098 5.70107 6.14937 6.28252 6.41972 6.60206 6.77990 7.26821 7.37398 8.09625 8.40603 9.27406 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007592 B = 0.006000 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.233387 B = 4665.677203 C = 7681.929693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.056 4.056 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.057 0.943 9 N -0.723 5.723 10 C 0.141 3.859 11 C 0.189 3.811 12 N -0.690 5.690 13 C 0.505 3.495 14 O -0.563 6.563 15 C 0.082 3.918 16 N -0.489 5.489 17 C 0.420 3.580 18 O -0.441 6.441 19 N -0.336 5.336 20 N -0.338 5.338 21 C 0.430 3.570 22 O -0.429 6.429 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.105 4.105 27 C -0.122 4.122 28 H 0.251 0.749 29 H 0.380 0.620 30 H 0.020 0.980 31 H 0.010 0.990 32 H 0.412 0.588 33 H 0.172 0.828 34 H 0.139 0.861 35 H 0.427 0.573 36 H 0.436 0.564 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 -17.420 2.493 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.250 4.250 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.076 0.924 9 N -0.367 5.367 10 C 0.014 3.986 11 C 0.103 3.897 12 N -0.343 5.343 13 C 0.290 3.710 14 O -0.442 6.442 15 C -0.044 4.044 16 N -0.208 5.208 17 C 0.109 3.891 18 O -0.244 6.244 19 N -0.180 5.180 20 N -0.183 5.183 21 C 0.119 3.881 22 O -0.233 6.233 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.142 4.142 27 C -0.161 4.161 28 H 0.060 0.940 29 H 0.213 0.787 30 H 0.037 0.963 31 H 0.028 0.972 32 H 0.249 0.751 33 H 0.189 0.811 34 H 0.156 0.844 35 H 0.289 0.711 36 H 0.299 0.701 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.753 -17.261 3.851 18.931 hybrid contribution -0.657 1.452 -1.547 2.222 sum -7.411 -15.809 2.304 17.611 Atomic orbital electron populations 1.69739 1.05807 1.25715 1.59334 1.25201 0.96213 0.99745 1.03800 0.85333 0.78012 0.81154 0.76787 1.20348 1.22187 1.21874 1.19431 0.90821 0.85606 1.41233 0.92450 1.42210 1.05402 0.99945 1.89100 1.21116 0.94460 0.85894 0.97174 1.20373 0.90723 0.93515 0.85115 1.45665 1.10601 1.72478 1.05528 1.20790 0.88627 0.76308 0.85245 1.90713 1.16599 1.51297 1.85553 1.22027 0.92397 1.09094 0.80905 1.46594 1.42494 1.07565 1.24191 1.21422 0.93859 0.81755 0.92076 1.84849 1.57073 1.22749 1.59689 1.78243 1.20357 1.04298 1.15127 1.78168 1.19712 0.99614 1.20794 1.21220 0.95400 0.83024 0.88442 1.84987 1.47958 1.13327 1.76995 1.21716 0.98096 0.99700 0.95672 1.21533 0.97121 0.93359 1.02916 1.21531 0.98574 0.97502 0.97509 1.21399 0.97238 0.96763 0.98831 1.21816 0.98463 0.93825 1.01985 0.94021 0.78664 0.96250 0.97209 0.75092 0.81107 0.84354 0.71116 0.70095 0.92312 0.90990 0.90547 0.90826 0.92096 0.90229 0.91754 0.91856 0.91501 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.51 13.06 21.65 0.28 -53.23 16 2 C -0.06 -3.04 5.50 84.86 0.47 -2.57 16 3 Si 0.96 44.93 29.55 68.60 2.03 46.96 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.24 -12.76 9.99 84.03 0.84 -11.92 16 8 H 0.06 3.14 7.83 -2.91 -0.02 3.12 16 9 N -0.72 -33.42 5.19 -343.46 -1.78 -35.20 16 10 C 0.14 5.59 4.79 86.38 0.41 6.01 16 11 C 0.19 5.27 0.32 3.61 0.00 5.28 16 12 N -0.69 -16.53 3.58 -422.91 -1.51 -18.04 16 13 C 0.51 13.89 7.31 87.65 0.64 14.53 16 14 O -0.56 -20.86 12.73 -3.02 -0.04 -20.90 16 15 C 0.08 1.64 6.50 85.63 0.56 2.20 16 16 N -0.49 -12.99 2.25 -759.28 -1.71 -14.69 16 17 C 0.42 13.74 9.15 179.71 1.65 15.38 16 18 O -0.44 -14.07 13.58 -89.34 -1.21 -15.28 16 19 N -0.34 -12.33 12.72 -173.66 -2.21 -14.54 16 20 N -0.34 -11.47 12.72 -173.66 -2.21 -13.68 16 21 C 0.43 11.42 9.15 179.72 1.65 13.07 16 22 O -0.43 -7.43 13.58 -89.38 -1.21 -8.65 16 23 C -0.11 -2.75 4.67 30.59 0.14 -2.61 16 24 C -0.11 -1.80 5.75 30.59 0.18 -1.63 16 25 C -0.11 -1.70 5.92 30.59 0.18 -1.52 16 26 C -0.10 -1.93 5.77 30.59 0.18 -1.76 16 27 C -0.12 -3.14 4.58 30.59 0.14 -3.00 16 28 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 29 H 0.38 17.72 6.46 -92.71 -0.60 17.12 16 30 H 0.02 0.89 6.25 -2.39 -0.01 0.87 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.41 7.33 7.20 -92.71 -0.67 6.66 16 33 H 0.17 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.14 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.43 12.45 9.06 -74.06 -0.67 11.77 16 36 H 0.44 1.59 9.06 -74.06 -0.67 0.92 16 37 H 0.06 1.70 7.10 -2.39 -0.02 1.68 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 0.98 6.79 -2.38 -0.02 0.96 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 44 H 0.06 1.12 7.61 -2.39 -0.02 1.10 16 45 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.05 1.72 6.28 -2.39 -0.02 1.71 16 Total: -1.00 -78.94 374.90 -4.09 -83.03 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -1.54 Total: 32.76 kcal Atomic # 6 Polarization: 24.43 SS G_CDS: 7.02 Total: 31.46 kcal Atomic # 7 Polarization: -140.25 SS G_CDS: -9.14 Total: -149.39 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -2.47 Total: -44.82 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -78.94 -4.09 -83.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725231039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.337 kcal (2) G-P(sol) polarization free energy of solvation -78.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds