Wall clock time and date at job start Tue Mar 31 2020 22:35:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86806 * 119.99607 * 2 1
4 4 H 1.48496 * 109.47057 * 270.00159 * 3 2 1
5 5 H 1.48496 * 109.47148 * 30.00237 * 3 2 1
6 6 H 1.48501 * 109.47036 * 150.00167 * 3 2 1
7 7 C 1.38806 * 120.00236 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00383 * 359.97438 * 7 2 1
9 9 N 1.36933 * 120.00139 * 179.97438 * 7 2 1
10 10 C 1.46496 * 120.00280 * 184.35918 * 9 7 2
11 11 H 1.09001 * 109.47298 * 184.54535 * 10 9 7
12 12 C 1.53001 * 109.46777 * 304.53849 * 10 9 7
13 13 N 1.46500 * 109.47461 * 304.99802 * 12 10 9
14 14 C 1.34772 * 120.00237 * 179.97438 * 13 12 10
15 15 O 1.21633 * 119.99974 * 0.02562 * 14 13 12
16 16 C 1.47257 * 120.00146 * 180.02562 * 14 13 12
17 17 C 1.36770 * 126.94307 * 0.02562 * 16 14 13
18 18 N 1.34653 * 108.39847 * 179.97438 * 17 16 14
19 19 H 0.96998 * 124.85283 * 179.97438 * 18 17 16
20 20 C 1.36449 * 110.30004 * 359.97438 * 18 17 16
21 21 C 1.34485 * 108.85484 * 359.74918 * 20 18 17
22 22 C 1.50697 * 126.83798 * 180.25151 * 21 20 18
23 23 C 1.53008 * 117.49728 * 8.89834 * 22 21 20
24 24 C 1.53003 * 117.50154 * 300.24135 * 22 21 20
25 25 C 1.50696 * 109.47508 * 64.53989 * 10 9 7
26 26 C 1.38236 * 119.99979 * 33.29201 * 25 10 9
27 27 C 1.38232 * 120.00204 * 179.97438 * 26 25 10
28 28 C 1.38234 * 120.00183 * 359.97438 * 27 26 25
29 29 C 1.38237 * 119.99510 * 359.97438 * 28 27 26
30 30 C 1.38230 * 120.00378 * 0.09166 * 29 28 27
31 31 H 0.96999 * 120.00858 * 359.97438 * 1 2 3
32 32 H 0.97002 * 119.99977 * 4.35473 * 9 7 2
33 33 H 1.09003 * 109.46907 * 65.00666 * 12 10 9
34 34 H 1.09006 * 109.46828 * 185.00109 * 12 10 9
35 35 H 0.96996 * 119.99957 * 0.02562 * 13 12 10
36 36 H 1.08001 * 125.80192 * 359.97438 * 17 16 14
37 37 H 1.07995 * 125.57315 * 180.02562 * 20 18 17
38 38 H 1.08998 * 115.55245 * 154.56311 * 22 21 20
39 39 H 1.09002 * 117.49297 * 359.97438 * 23 22 21
40 40 H 1.08996 * 117.50057 * 145.02188 * 23 22 21
41 41 H 1.09002 * 117.50082 * 214.97760 * 24 22 21
42 42 H 1.08996 * 117.49595 * 359.96778 * 24 22 21
43 43 H 1.08004 * 119.99823 * 0.02562 * 26 25 10
44 44 H 1.08001 * 120.00053 * 180.02562 * 27 26 25
45 45 H 1.07995 * 120.00081 * 179.72029 * 28 27 26
46 46 H 1.08002 * 119.99817 * 179.97438 * 29 28 27
47 47 H 1.08005 * 120.00173 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4975 2.0465 -1.4000
5 1 1.4475 2.6527 0.7001
6 1 3.5477 1.4403 0.7000
7 6 2.0103 -1.2021 -0.0005
8 1 1.4703 -2.1374 -0.0005
9 7 3.3796 -1.2020 -0.0011
10 6 4.1121 -2.4670 -0.0981
11 1 5.1810 -2.2762 -0.0022
12 6 3.6593 -3.4057 1.0221
13 7 3.8191 -2.7358 2.3151
14 6 3.4807 -3.3757 3.4520
15 8 3.0430 -4.5096 3.4045
16 6 3.6408 -2.7021 4.7517
17 6 4.1153 -1.4380 4.9695
18 7 4.1027 -1.2018 6.2950
19 1 4.3913 -0.3758 6.7137
20 6 3.6259 -2.2905 6.9653
21 6 3.3170 -3.2488 6.0738
22 6 2.7538 -4.6141 6.3736
23 6 2.3045 -4.8933 7.8093
24 6 3.5820 -5.5393 7.2675
25 6 3.8339 -3.1076 -1.4334
26 6 3.6240 -2.3179 -2.5485
27 6 3.3693 -2.9054 -3.7735
28 6 3.3251 -4.2827 -3.8838
29 6 3.5361 -5.0723 -2.7689
30 6 3.7894 -4.4848 -1.5436
31 1 -0.4851 0.8400 0.0004
32 1 3.8646 -0.3644 0.0627
33 1 2.6113 -3.6674 0.8754
34 1 4.2658 -4.3112 1.0047
35 1 4.1677 -1.8315 2.3530
36 1 4.4442 -0.7467 4.2077
37 1 3.5107 -2.3681 8.0363
38 1 2.1801 -5.0732 5.5685
39 1 2.4166 -4.0895 8.5370
40 1 1.4355 -5.5363 7.9487
41 1 3.5530 -6.6072 7.0506
42 1 4.5345 -5.1607 7.6383
43 1 3.6597 -1.2419 -2.4626
44 1 3.2057 -2.2885 -4.6447
45 1 3.1217 -4.7416 -4.8399
46 1 3.5012 -6.1483 -2.8549
47 1 3.9539 -5.1018 -0.6725
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001732022657.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:35:09
Heat of formation + Delta-G solvation = 58.833269 kcal
Electronic energy + Delta-G solvation = -28872.526200 eV
Core-core repulsion = 25021.309630 eV
Total energy + Delta-G solvation = -3851.216569 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.12061 -40.57120 -39.69225 -37.86056 -37.42935 -35.03472 -33.72018 -32.08943
-31.70821 -31.38148 -30.13112 -28.54205 -26.10638 -24.30220 -24.03109 -23.41139
-23.16073 -22.79163 -21.25850 -20.54439 -20.03452 -19.73376 -19.29047 -17.83445
-17.16077 -16.73015 -16.55891 -16.27765 -16.12000 -15.81286 -15.62808 -15.40973
-15.14497 -14.86398 -14.79206 -14.68856 -14.16277 -14.14380 -13.95584 -13.70465
-13.44609 -13.19686 -13.12187 -12.86206 -12.54202 -12.39964 -12.32705 -12.08552
-11.88506 -11.75077 -11.64090 -11.53939 -11.22803 -11.00790 -10.74357 -9.94842
-9.65520 -9.55068 -9.39889 -9.24148 -9.07125 -7.91592 -5.29350 0.60865
0.68014 0.85416 1.39315 1.45409 1.46966 1.53479 2.33860 2.53292
2.55031 2.68185 3.02285 3.20235 3.38800 3.60286 3.78977 4.02799
4.04471 4.12265 4.21061 4.26004 4.26156 4.28613 4.31664 4.36100
4.40145 4.46934 4.62609 4.75667 4.80908 4.84691 4.87340 4.90888
5.02829 5.13510 5.19859 5.25473 5.31008 5.31267 5.42506 5.62850
5.73905 5.75740 5.79908 5.83633 5.95802 5.98652 6.28727 6.28926
6.71359 6.85129 7.15244 7.51000 7.82748 8.07337 9.30478
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.010444 B = 0.003570 C = 0.002897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2680.383017 B = 7840.694117 C = 9663.080755
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.990 5.990
2 C -0.065 4.065
3 Si 0.954 3.046
4 H -0.287 1.287
5 H -0.309 1.309
6 H -0.232 1.232
7 C -0.197 4.197
8 H 0.040 0.960
9 N -0.733 5.733
10 C 0.207 3.793
11 H 0.113 0.887
12 C 0.130 3.870
13 N -0.699 5.699
14 C 0.576 3.424
15 O -0.599 6.599
16 C -0.262 4.262
17 C 0.065 3.935
18 N -0.530 5.530
19 H 0.438 0.562
20 C -0.007 4.007
21 C -0.111 4.111
22 C -0.105 4.105
23 C -0.161 4.161
24 C -0.165 4.165
25 C -0.095 4.095
26 C -0.100 4.100
27 C -0.138 4.138
28 C -0.132 4.132
29 C -0.131 4.131
30 C -0.134 4.134
31 H 0.252 0.748
32 H 0.374 0.626
33 H 0.024 0.976
34 H 0.071 0.929
35 H 0.406 0.594
36 H 0.196 0.804
37 H 0.202 0.798
38 H 0.078 0.922
39 H 0.115 0.885
40 H 0.098 0.902
41 H 0.092 0.908
42 H 0.103 0.897
43 H 0.111 0.889
44 H 0.130 0.870
45 H 0.142 0.858
46 H 0.140 0.860
47 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.387 -3.019 10.585 18.919
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.641 5.641
2 C -0.255 4.255
3 Si 0.781 3.219
4 H -0.213 1.213
5 H -0.236 1.236
6 H -0.156 1.156
7 C -0.328 4.328
8 H 0.058 0.942
9 N -0.376 5.376
10 C 0.098 3.902
11 H 0.130 0.870
12 C 0.004 3.996
13 N -0.348 5.348
14 C 0.367 3.633
15 O -0.482 6.482
16 C -0.273 4.273
17 C -0.073 4.073
18 N -0.125 5.125
19 H 0.279 0.721
20 C -0.135 4.135
21 C -0.118 4.118
22 C -0.124 4.124
23 C -0.197 4.197
24 C -0.202 4.202
25 C -0.098 4.098
26 C -0.119 4.119
27 C -0.156 4.156
28 C -0.150 4.150
29 C -0.149 4.149
30 C -0.153 4.153
31 H 0.061 0.939
32 H 0.208 0.792
33 H 0.043 0.957
34 H 0.089 0.911
35 H 0.242 0.758
36 H 0.213 0.787
37 H 0.218 0.782
38 H 0.096 0.904
39 H 0.133 0.867
40 H 0.117 0.883
41 H 0.110 0.890
42 H 0.122 0.878
43 H 0.129 0.871
44 H 0.148 0.852
45 H 0.160 0.840
46 H 0.158 0.842
47 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges 14.937 -3.743 10.631 18.712
hybrid contribution -0.423 1.658 -0.383 1.754
sum 14.514 -2.085 10.248 17.890
Atomic orbital electron populations
1.69929 1.07653 1.26204 1.60325 1.25470 0.95816 1.01153 1.03054
0.85450 0.79129 0.79498 0.77781 1.21332 1.23637 1.15571 1.18570
0.82147 0.92382 1.39701 0.94160 1.42591 1.02505 1.03638 1.88849
1.19492 0.96384 0.85296 0.89062 0.86979 1.21543 0.99498 0.95423
0.83109 1.45449 1.65626 1.18757 1.05009 1.17904 0.76305 0.85058
0.84080 1.90662 1.48566 1.20788 1.88174 1.20404 1.16760 0.97511
0.92599 1.22205 1.01851 0.96262 0.87005 1.41427 1.49904 1.15703
1.05499 0.72103 1.21803 1.06140 0.86879 0.98724 1.19841 1.05255
0.95606 0.91059 1.20224 1.04294 0.93507 0.94405 1.23110 0.98255
1.03590 0.94785 1.23022 0.96055 0.98296 1.02812 1.20588 0.99232
0.93799 0.96178 1.20992 0.98395 0.99895 0.92578 1.21375 1.00758
0.95825 0.97670 1.21368 1.00551 0.93544 0.99521 1.21369 1.00210
1.00731 0.92598 1.21297 1.01250 0.94296 0.98454 0.93886 0.79158
0.95725 0.91109 0.75783 0.78683 0.78169 0.90354 0.86682 0.88348
0.88977 0.87833 0.87108 0.85247 0.84038 0.84178 0.85647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -63.21 13.97 21.65 0.30 -62.90 16
2 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16
3 Si 0.95 42.13 27.78 68.60 1.91 44.04 16
4 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16
5 H -0.31 -14.41 7.11 99.48 0.71 -13.70 16
6 H -0.23 -8.34 6.46 99.48 0.64 -7.70 16
7 C -0.20 -10.44 9.11 84.03 0.77 -9.68 16
8 H 0.04 2.55 7.15 -2.91 -0.02 2.53 16
9 N -0.73 -29.56 3.62 -326.52 -1.18 -30.75 16
10 C 0.21 7.10 3.26 44.24 0.14 7.24 16
11 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16
12 C 0.13 4.88 3.87 86.38 0.33 5.22 16
13 N -0.70 -24.77 5.38 -466.52 -2.51 -27.28 16
14 C 0.58 22.77 7.81 86.62 0.68 23.45 16
15 O -0.60 -28.29 15.41 -4.14 -0.06 -28.35 16
16 C -0.26 -8.44 6.29 -19.04 -0.12 -8.56 16
17 C 0.07 1.46 11.40 83.92 0.96 2.42 16
18 N -0.53 -8.47 5.90 -194.56 -1.15 -9.62 16
19 H 0.44 3.24 8.96 -92.71 -0.83 2.41 16
20 C -0.01 -0.14 11.26 83.12 0.94 0.80 16
21 C -0.11 -3.21 6.02 -18.51 -0.11 -3.32 16
22 C -0.11 -3.10 5.78 -11.54 -0.07 -3.16 16
23 C -0.16 -3.25 10.03 30.62 0.31 -2.95 16
24 C -0.16 -3.67 10.24 30.62 0.31 -3.36 16
25 C -0.10 -3.41 5.19 -19.87 -0.10 -3.51 16
26 C -0.10 -3.67 9.01 22.27 0.20 -3.47 16
27 C -0.14 -4.45 10.05 22.27 0.22 -4.22 16
28 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16
29 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16
30 C -0.13 -4.41 9.14 22.27 0.20 -4.20 16
31 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16
32 H 0.37 13.74 5.87 -92.71 -0.54 13.20 16
33 H 0.02 1.16 7.15 -2.39 -0.02 1.14 16
34 H 0.07 2.44 6.86 -2.38 -0.02 2.43 16
35 H 0.41 12.31 7.08 -92.71 -0.66 11.66 16
36 H 0.20 3.30 7.45 -2.91 -0.02 3.28 16
37 H 0.20 2.27 7.16 -2.91 -0.02 2.25 16
38 H 0.08 2.97 7.03 -2.39 -0.02 2.95 16
39 H 0.11 1.72 7.00 -2.39 -0.02 1.70 16
40 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16
41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16
42 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16
43 H 0.11 4.25 7.51 -2.91 -0.02 4.23 16
44 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16
45 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16
46 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16
47 H 0.13 3.85 6.22 -2.91 -0.02 3.83 16
Total: -1.00 -82.56 387.27 1.81 -80.75
By element:
Atomic # 1 Polarization: 52.80 SS G_CDS: -1.06 Total: 51.73 kcal
Atomic # 6 Polarization: -23.19 SS G_CDS: 5.57 Total: -17.61 kcal
Atomic # 7 Polarization: -126.01 SS G_CDS: -4.54 Total: -130.55 kcal
Atomic # 8 Polarization: -28.29 SS G_CDS: -0.06 Total: -28.35 kcal
Atomic # 14 Polarization: 42.13 SS G_CDS: 1.91 Total: 44.04 kcal
Total: -82.56 1.81 -80.75 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732022657.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 139.583 kcal
(2) G-P(sol) polarization free energy of solvation -82.564 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.019 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.749 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.833 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds