Wall clock time and date at job start Tue Mar 31 2020 22:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99720 * 2 1 4 4 H 1.48504 * 109.47140 * 240.00060 * 3 2 1 5 5 H 1.48499 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47324 * 120.00407 * 3 2 1 7 7 C 1.38814 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99734 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99906 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47244 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61491 * 184.99936 * 11 10 9 13 13 C 1.53777 * 87.08277 * 220.02390 * 12 11 10 14 14 N 1.46500 * 113.61443 * 139.98423 * 13 12 11 15 15 C 1.34774 * 120.00016 * 156.52613 * 14 13 12 16 16 O 1.21736 * 119.99997 * 0.02562 * 15 14 13 17 17 C 1.46394 * 119.99782 * 180.02562 * 15 14 13 18 18 N 1.37635 * 126.33177 * 0.22315 * 17 15 14 19 19 H 0.96994 * 125.54394 * 0.05344 * 18 17 15 20 20 C 1.35636 * 108.90104 * 180.18387 * 18 17 15 21 21 C 1.35126 * 109.21909 * 359.62204 * 20 18 17 22 22 C 1.39102 * 126.32512 * 180.02562 * 17 15 14 23 23 C 1.48177 * 126.63448 * 359.92688 * 22 17 15 24 24 C 1.39454 * 120.12817 * 309.74180 * 23 22 17 25 25 C 1.37989 * 119.86283 * 179.76671 * 24 23 22 26 26 C 1.38343 * 120.13351 * 0.49323 * 25 24 23 27 27 C 1.38343 * 120.26321 * 359.78202 * 26 25 24 28 28 C 1.37987 * 120.13402 * 359.96051 * 27 26 25 29 29 C 1.53779 * 87.17341 * 25.39054 * 13 12 11 30 30 H 0.96998 * 119.99849 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99999 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46779 * 60.00550 * 10 9 7 33 33 H 1.09000 * 109.47290 * 300.01076 * 10 9 7 34 34 H 1.08998 * 112.85133 * 316.20513 * 11 10 9 35 35 H 1.09004 * 113.61226 * 105.47491 * 12 11 10 36 36 H 1.08993 * 113.69152 * 334.58884 * 12 11 10 37 37 H 1.09000 * 113.61420 * 270.80024 * 13 12 11 38 38 H 0.96999 * 119.99847 * 336.53064 * 14 13 12 39 39 H 1.08002 * 125.39193 * 179.89723 * 20 18 17 40 40 H 1.08009 * 126.09424 * 180.22846 * 21 20 18 41 41 H 1.08000 * 120.06409 * 0.02582 * 24 23 22 42 42 H 1.08005 * 119.93225 * 180.27410 * 25 24 23 43 43 H 1.07998 * 119.86747 * 179.76696 * 26 25 24 44 44 H 1.08002 * 119.93304 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.06711 * 180.02562 * 28 27 26 46 46 H 1.09006 * 113.60956 * 89.15493 * 29 13 12 47 47 H 1.08999 * 113.61717 * 220.05402 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 6 1.7306 -6.2001 0.1195 13 6 0.7048 -6.6992 -0.9116 14 7 1.2670 -7.6251 -1.8980 15 6 0.4624 -8.4929 -2.5429 16 8 -0.7317 -8.5070 -2.3062 17 6 1.0243 -9.4184 -3.5282 18 7 2.3480 -9.5172 -3.8920 19 1 3.0726 -8.9805 -3.5346 20 6 2.4738 -10.4853 -4.8336 21 6 1.2597 -11.0235 -5.0832 22 6 0.3196 -10.3632 -4.2669 23 6 -1.1375 -10.6254 -4.2064 24 6 -1.7622 -10.8256 -2.9758 25 6 -3.1203 -11.0646 -2.9255 26 6 -3.8602 -11.1160 -4.0933 27 6 -3.2450 -10.9239 -5.3175 28 6 -1.8885 -10.6788 -5.3802 29 6 0.6141 -5.2476 -1.4109 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 2.6855 -3.7149 0.8879 33 1 2.6843 -3.7141 -0.8921 34 1 0.2381 -4.6708 0.6935 35 1 1.6170 -6.6547 1.1037 36 1 2.7589 -6.2232 -0.2411 37 1 -0.2196 -7.0661 -0.4655 38 1 2.2183 -7.6136 -2.0868 39 1 3.3986 -10.7823 -5.3057 40 1 1.0476 -11.8177 -5.7838 41 1 -1.1849 -10.7895 -2.0638 42 1 -3.6061 -11.2154 -1.9727 43 1 -4.9222 -11.3071 -4.0492 44 1 -3.8277 -10.9655 -6.2259 45 1 -1.4095 -10.5286 -6.3363 46 1 1.3365 -5.0084 -2.1913 47 1 -0.3996 -4.9342 -1.6606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733958405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:05 Heat of formation + Delta-G solvation = 42.631344 kcal Electronic energy + Delta-G solvation = -27807.475803 eV Core-core repulsion = 23955.556665 eV Total energy + Delta-G solvation = -3851.919138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34174 -40.82891 -39.61692 -39.20040 -36.35945 -34.75125 -33.43556 -32.83508 -31.74729 -30.89258 -29.65228 -28.36293 -26.67677 -25.50655 -24.41222 -23.39675 -23.31785 -22.28501 -21.35554 -21.07982 -20.20747 -19.67144 -19.03446 -17.61356 -17.25371 -16.79730 -16.57505 -16.37274 -16.16182 -15.83487 -15.63025 -15.30390 -15.15113 -14.87901 -14.78765 -14.43792 -14.39468 -14.17207 -13.82169 -13.66386 -13.41139 -13.26000 -13.14696 -13.04295 -12.92321 -12.71666 -12.25310 -12.14355 -12.00253 -11.89976 -11.86719 -11.41730 -11.34743 -11.10478 -10.88132 -10.27474 -10.11357 -9.70892 -9.40706 -8.99917 -8.94406 -7.95742 -5.24871 0.08072 0.61684 0.76514 1.45732 1.49351 1.55629 1.82328 2.03525 2.23471 2.30875 2.55466 3.02185 3.36814 3.52810 3.57664 3.83785 3.85289 3.90426 3.97329 4.11797 4.18334 4.28714 4.32704 4.33993 4.42701 4.55356 4.62697 4.68307 4.75766 4.78312 4.81261 4.86642 4.93171 4.97610 5.08189 5.15968 5.20235 5.22200 5.26520 5.38043 5.47863 5.55985 5.59035 5.68077 5.71023 5.79475 5.90871 6.19381 6.26443 6.46052 6.61174 7.15887 7.32004 8.10198 8.31928 9.27903 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.002036 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.142119 B =13750.843188 C =14538.283710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.748 5.748 10 C 0.165 3.835 11 C -0.113 4.113 12 C -0.112 4.112 13 C 0.133 3.867 14 N -0.705 5.705 15 C 0.579 3.421 16 O -0.558 6.558 17 C -0.069 4.069 18 N -0.524 5.524 19 H 0.433 0.567 20 C 0.054 3.946 21 C -0.216 4.216 22 C -0.064 4.064 23 C -0.036 4.036 24 C -0.085 4.085 25 C -0.139 4.139 26 C -0.127 4.127 27 C -0.132 4.132 28 C -0.116 4.116 29 C -0.141 4.141 30 H 0.251 0.749 31 H 0.372 0.628 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.409 0.591 39 H 0.218 0.782 40 H 0.159 0.841 41 H 0.103 0.897 42 H 0.129 0.871 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.133 0.867 46 H 0.084 0.916 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -29.683 -11.000 32.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.390 5.390 10 C 0.039 3.961 11 C -0.132 4.132 12 C -0.150 4.150 13 C 0.028 3.972 14 N -0.356 5.356 15 C 0.368 3.632 16 O -0.437 6.437 17 C -0.182 4.182 18 N -0.121 5.121 19 H 0.274 0.726 20 C -0.083 4.083 21 C -0.239 4.239 22 C -0.073 4.073 23 C -0.036 4.036 24 C -0.103 4.103 25 C -0.157 4.157 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.134 4.134 29 C -0.180 4.180 30 H 0.060 0.940 31 H 0.203 0.797 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.245 0.755 39 H 0.235 0.765 40 H 0.176 0.824 41 H 0.121 0.879 42 H 0.147 0.853 43 H 0.159 0.841 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.102 0.898 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.584 -29.467 -10.713 31.687 hybrid contribution 0.336 1.659 0.284 1.716 sum 4.920 -27.808 -10.430 30.105 Atomic orbital electron populations 1.69831 1.06758 1.26159 1.59560 1.25640 0.96425 1.01360 1.03797 0.85173 0.77152 0.78917 0.78289 1.20269 1.22279 1.20167 1.19641 0.91569 0.85429 1.41172 0.90437 1.42620 1.05624 1.01412 1.89356 1.20780 0.93477 0.84190 0.97688 1.22463 0.98854 0.94539 0.97381 1.23223 0.99101 0.93159 0.99528 1.22360 0.98425 0.86938 0.89427 1.45746 1.11442 1.36705 1.41709 1.17348 0.86097 0.79688 0.80076 1.90877 1.15903 1.71148 1.65732 1.20194 0.85339 1.05872 1.06815 1.41950 1.06817 1.30756 1.32573 0.72636 1.22616 1.01034 0.91271 0.93350 1.21183 0.91792 1.05603 1.05367 1.18867 0.92311 0.97345 0.98789 1.18366 0.91445 1.00244 0.93596 1.21106 0.95077 0.97430 0.96681 1.21279 0.93952 1.01156 0.99334 1.21466 1.00767 0.99904 0.92385 1.21348 0.94629 1.00332 0.98697 1.21373 0.94435 1.00030 0.97608 1.23478 1.01159 0.95979 0.97377 0.94039 0.79681 0.95831 0.95775 0.90099 0.89188 0.87402 0.88150 0.75457 0.76523 0.82370 0.87926 0.85349 0.84147 0.83758 0.84868 0.89787 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 3 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.75 -38.68 5.60 -343.45 -1.92 -40.61 16 10 C 0.16 6.39 6.10 86.38 0.53 6.91 16 11 C -0.11 -3.49 3.75 -10.21 -0.04 -3.53 16 12 C -0.11 -2.36 7.39 31.12 0.23 -2.13 16 13 C 0.13 3.24 4.21 45.52 0.19 3.43 16 14 N -0.71 -14.25 5.36 -444.26 -2.38 -16.63 16 15 C 0.58 14.91 7.76 86.37 0.67 15.58 16 16 O -0.56 -18.92 13.04 -4.46 -0.06 -18.98 16 17 C -0.07 -1.44 7.07 40.56 0.29 -1.15 16 18 N -0.52 -5.90 5.98 -183.13 -1.10 -7.00 16 19 H 0.43 1.97 8.18 -92.71 -0.76 1.22 16 20 C 0.05 0.48 11.86 83.39 0.99 1.47 16 21 C -0.22 -3.24 10.73 22.21 0.24 -3.00 16 22 C -0.06 -1.43 5.67 -19.77 -0.11 -1.54 16 23 C -0.04 -0.91 5.27 -20.05 -0.11 -1.02 16 24 C -0.08 -2.28 7.63 22.50 0.17 -2.11 16 25 C -0.14 -3.31 10.03 22.24 0.22 -3.09 16 26 C -0.13 -2.61 10.04 22.32 0.22 -2.38 16 27 C -0.13 -2.61 10.03 22.24 0.22 -2.38 16 28 C -0.12 -2.56 9.74 22.50 0.22 -2.34 16 29 C -0.14 -4.25 7.45 31.18 0.23 -4.02 16 30 H 0.25 15.27 8.31 -92.71 -0.77 14.49 16 31 H 0.37 20.76 7.67 -92.71 -0.71 20.05 16 32 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.02 0.92 7.85 -2.39 -0.02 0.90 16 34 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.11 1.80 8.07 -2.39 -0.02 1.78 16 37 H 0.10 2.81 7.50 -2.39 -0.02 2.79 16 38 H 0.41 5.24 7.84 -92.71 -0.73 4.52 16 39 H 0.22 -0.05 8.06 -2.91 -0.02 -0.07 16 40 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.10 2.95 7.35 -2.91 -0.02 2.93 16 42 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 45 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 46 H 0.08 2.49 7.90 -2.38 -0.02 2.47 16 47 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -79.57 393.56 1.15 -78.42 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -1.18 Total: 35.54 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 5.48 Total: -18.62 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -5.12 Total: -124.94 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.06 Total: -18.98 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -79.57 1.15 -78.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733958405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.055 kcal (2) G-P(sol) polarization free energy of solvation -79.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds