Wall clock time and date at job start Tue Mar 31 2020 22:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48502 * 109.46979 * 270.00086 * 3 2 1 5 5 H 1.48504 * 109.47217 * 29.99339 * 3 2 1 6 6 H 1.48494 * 109.47225 * 149.99550 * 3 2 1 7 7 C 1.38811 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00446 * 0.02562 * 7 2 1 9 9 N 1.36946 * 119.99461 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99553 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46900 * 180.02562 * 10 9 7 12 12 C 1.38227 * 120.00143 * 89.99696 * 11 10 9 13 13 C 1.38241 * 120.00031 * 180.02562 * 12 11 10 14 14 C 1.38230 * 120.00186 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00434 * 179.97438 * 14 13 12 16 16 N 1.46493 * 109.47082 * 89.99576 * 15 14 13 17 17 C 1.34784 * 119.99864 * 180.02562 * 16 15 14 18 18 O 1.21283 * 119.99649 * 359.72839 * 17 16 15 19 19 C 1.50694 * 119.99988 * 179.72721 * 17 16 15 20 20 C 1.53001 * 109.47168 * 179.97438 * 19 17 16 21 21 C 1.50699 * 109.47500 * 180.02562 * 20 19 17 22 22 C 1.38654 * 120.78909 * 269.72503 * 21 20 19 23 23 C 1.38200 * 119.16151 * 179.79589 * 22 21 20 24 24 N 1.31870 * 120.76630 * 0.48202 * 23 22 21 25 25 C 1.31870 * 121.72391 * 359.74453 * 24 23 22 26 26 C 1.38205 * 120.76467 * 0.02562 * 25 24 23 27 27 C 1.38239 * 119.99581 * 0.25258 * 14 13 12 28 28 C 1.38233 * 120.00183 * 359.48931 * 27 14 13 29 29 H 0.96997 * 120.00181 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99609 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47139 * 60.00204 * 10 9 7 32 32 H 1.08998 * 109.47399 * 299.99803 * 10 9 7 33 33 H 1.08005 * 120.00331 * 0.02562 * 12 11 10 34 34 H 1.08005 * 119.99820 * 179.97438 * 13 12 11 35 35 H 1.09007 * 109.46606 * 329.99826 * 15 14 13 36 36 H 1.09006 * 109.47204 * 210.00283 * 15 14 13 37 37 H 0.97000 * 120.00740 * 359.72841 * 16 15 14 38 38 H 1.08998 * 109.47224 * 299.99701 * 19 17 16 39 39 H 1.09002 * 109.47054 * 60.00213 * 19 17 16 40 40 H 1.09000 * 109.47339 * 299.99895 * 20 19 17 41 41 H 1.09002 * 109.46926 * 60.00175 * 20 19 17 42 42 H 1.08002 * 120.41470 * 359.97438 * 22 21 20 43 43 H 1.07997 * 119.61862 * 180.20109 * 23 22 21 44 44 H 1.07998 * 119.62362 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.41988 * 179.97438 * 26 25 24 46 46 H 1.08009 * 119.99658 * 179.72932 * 27 14 13 47 47 H 1.08003 * 119.99828 * 180.23150 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.5938 -2.1955 0.0023 12 6 6.2724 -2.0697 1.2000 13 6 7.6314 -1.8165 1.2011 14 6 8.3117 -1.6887 0.0046 15 6 9.7931 -1.4122 0.0058 16 7 10.5265 -2.6803 0.0053 17 6 11.8744 -2.6792 0.0067 18 8 12.4799 -1.6284 0.0034 19 6 12.6289 -3.9837 0.0125 20 6 14.1329 -3.7029 0.0123 21 6 14.8875 -5.0073 0.0174 22 6 15.2471 -5.6146 1.2109 23 6 15.9350 -6.8127 1.1763 24 7 16.2572 -7.3727 0.0267 25 6 15.9356 -6.8215 -1.1273 26 6 15.2436 -5.6259 -1.1712 27 6 7.6320 -1.8088 -1.1931 28 6 6.2740 -2.0672 -1.1943 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0014 31 1 3.8492 -3.0422 -0.8891 32 1 3.8485 -3.0426 0.8908 33 1 5.7409 -2.1691 2.1349 34 1 8.1615 -1.7178 2.1369 35 1 10.0553 -0.8411 0.8965 36 1 10.0566 -0.8396 -0.8836 37 1 10.0423 -3.5208 0.0084 38 1 12.3651 -4.5520 0.9043 39 1 12.3669 -4.5588 -0.8757 40 1 14.3964 -3.1347 -0.8798 41 1 14.3952 -3.1276 0.9002 42 1 14.9904 -5.1584 2.1556 43 1 16.2159 -7.2938 2.1015 44 1 16.2170 -7.3094 -2.0488 45 1 14.9835 -5.1792 -2.1194 46 1 8.1627 -1.7046 -2.1280 47 1 5.7437 -2.1648 -2.1301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753589286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:06 Heat of formation + Delta-G solvation = 25.056687 kcal Electronic energy + Delta-G solvation = -26415.119204 eV Core-core repulsion = 22562.437972 eV Total energy + Delta-G solvation = -3852.681232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74482 -40.13026 -39.26291 -35.87489 -35.20723 -34.51436 -32.27994 -31.67841 -31.31236 -30.90246 -30.45095 -27.60616 -25.70787 -24.21764 -23.94101 -22.67320 -22.22506 -21.94278 -20.77630 -20.54674 -17.89981 -17.81765 -16.98989 -16.94455 -16.37706 -16.07065 -16.03963 -15.51175 -15.37046 -14.94204 -14.65530 -14.44737 -14.25004 -14.04139 -13.83874 -13.68849 -13.39283 -13.15013 -12.92569 -12.86967 -12.61872 -12.48107 -12.30271 -12.17601 -12.06274 -11.52996 -11.51004 -11.00838 -10.85656 -10.69313 -10.39652 -10.18759 -9.98945 -9.93488 -9.64821 -9.64210 -9.42333 -8.97110 -8.87711 -8.63810 -7.30220 -5.81853 -3.18372 0.64954 0.73289 1.20869 1.45118 2.27406 2.89262 3.33940 3.35015 3.39047 3.42830 3.80850 3.99423 4.07997 4.23201 4.37807 4.48283 4.55336 4.60089 4.61103 4.67979 4.71106 4.79011 4.99928 5.01795 5.15185 5.16024 5.17263 5.21189 5.33336 5.44475 5.47945 5.50120 5.55463 5.58598 5.67589 5.68262 5.87493 5.99224 5.99627 6.04968 6.22163 6.31533 6.43714 6.45636 6.51680 6.91659 7.02949 7.13998 7.50337 7.84916 7.92919 8.36737 9.15091 9.87321 10.06876 11.36171 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028332 B = 0.001496 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.048854 B =18706.050413 C =19095.478989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.189 3.811 11 C -0.070 4.070 12 C -0.107 4.107 13 C -0.104 4.104 14 C -0.124 4.124 15 C 0.165 3.835 16 N -0.724 5.724 17 C 0.512 3.488 18 O -0.542 6.542 19 C -0.135 4.135 20 C -0.068 4.068 21 C -0.038 4.038 22 C -0.170 4.170 23 C 0.100 3.900 24 N -0.491 5.491 25 C 0.100 3.900 26 C -0.170 4.170 27 C -0.104 4.104 28 C -0.108 4.108 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.403 0.597 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.135 0.865 46 H 0.120 0.880 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.440 -12.200 0.040 34.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.396 5.396 10 C 0.063 3.937 11 C -0.071 4.071 12 C -0.126 4.126 13 C -0.123 4.123 14 C -0.125 4.125 15 C 0.042 3.958 16 N -0.376 5.376 17 C 0.298 3.702 18 O -0.419 6.419 19 C -0.175 4.175 20 C -0.105 4.105 21 C -0.046 4.046 22 C -0.190 4.190 23 C -0.057 4.057 24 N -0.200 5.200 25 C -0.057 4.057 26 C -0.190 4.190 27 C -0.122 4.122 28 C -0.126 4.126 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.238 0.762 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.153 0.847 43 H 0.173 0.827 44 H 0.173 0.827 45 H 0.153 0.847 46 H 0.138 0.862 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 33.077 -12.298 0.041 35.290 hybrid contribution -0.335 1.676 0.011 1.709 sum 32.743 -10.622 0.052 34.423 Atomic orbital electron populations 1.69700 1.05081 1.25926 1.57250 1.24653 0.95208 0.97193 1.01778 0.86565 0.79264 0.84950 0.77893 1.20994 1.21606 1.20291 1.19058 0.80368 0.94849 1.43510 0.89077 1.42684 1.03897 1.01793 1.91228 1.19672 0.84641 0.89823 0.99613 1.20454 0.97117 0.96664 0.92871 1.21173 0.93855 0.99240 0.98305 1.21017 0.94474 0.99611 0.97155 1.19708 0.94433 1.04508 0.93834 1.20164 0.87050 0.85601 1.02967 1.46166 1.06153 1.09947 1.75364 1.20637 0.82269 0.91392 0.75906 1.90729 1.68178 1.33544 1.49472 1.21629 0.94958 0.95847 1.05038 1.20380 0.91963 0.92979 1.05226 1.20346 0.95196 0.95885 0.93153 1.22118 1.00681 0.97348 0.98871 1.22798 0.94049 0.92479 0.96372 1.67695 1.19493 1.34159 0.98633 1.22800 0.94039 0.92570 0.96289 1.22116 1.00678 0.97298 0.98927 1.21019 0.94492 0.99595 0.97139 1.21176 0.93864 0.99264 0.98312 0.92970 0.80445 0.94488 0.94553 0.85604 0.86213 0.90724 0.90690 0.76231 0.88530 0.88533 0.89544 0.89541 0.84672 0.82715 0.82713 0.84673 0.86199 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.97 55.49 0.78 -28.29 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.13 27.74 -169.99 -4.71 17.42 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.60 6.52 56.52 0.37 -6.24 16 7 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -17.70 5.40 -61.09 -0.33 -18.02 16 10 C 0.19 3.56 6.38 -5.19 -0.03 3.52 16 11 C -0.07 -1.09 5.25 -104.62 -0.55 -1.63 16 12 C -0.11 -1.47 9.70 -39.58 -0.38 -1.86 16 13 C -0.10 -1.19 9.70 -39.58 -0.38 -1.58 16 14 C -0.12 -1.33 5.25 -104.63 -0.55 -1.88 16 15 C 0.16 1.56 5.80 -5.20 -0.03 1.52 16 16 N -0.72 -5.56 5.55 -61.47 -0.34 -5.90 16 17 C 0.51 4.33 7.83 -10.98 -0.09 4.25 16 18 O -0.54 -6.74 15.98 5.56 0.09 -6.65 16 19 C -0.13 -0.70 5.68 -27.89 -0.16 -0.85 16 20 C -0.07 -0.39 4.68 -27.88 -0.13 -0.53 16 21 C -0.04 -0.22 5.17 -104.32 -0.54 -0.76 16 22 C -0.17 -0.96 9.82 -39.44 -0.39 -1.35 16 23 C 0.10 0.64 11.18 -17.55 -0.20 0.45 16 24 N -0.49 -4.02 10.36 -13.25 -0.14 -4.16 16 25 C 0.10 0.64 11.18 -17.55 -0.20 0.45 16 26 C -0.17 -0.96 9.82 -39.44 -0.39 -1.35 16 27 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 28 C -0.11 -1.47 9.70 -39.58 -0.38 -1.86 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 30 H 0.36 8.52 5.52 -40.82 -0.23 8.29 16 31 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 35 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.40 2.35 8.46 -40.82 -0.35 2.01 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.56 8.06 -51.93 -0.42 0.14 16 41 H 0.09 0.56 8.06 -51.93 -0.42 0.14 16 42 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 45 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 46 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 47 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -34.94 402.12 -10.54 -45.48 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.91 Total: 6.08 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -5.03 Total: -12.01 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.03 Total: -56.38 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: 0.09 Total: -6.65 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.94 -10.54 -45.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753589286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.541 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds