Wall clock time and date at job start Tue Mar 31 2020 22:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48502 * 109.46979 * 270.00086 * 3 2 1 5 5 H 1.48504 * 109.47217 * 29.99339 * 3 2 1 6 6 H 1.48494 * 109.47225 * 149.99550 * 3 2 1 7 7 C 1.38811 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00446 * 0.02562 * 7 2 1 9 9 N 1.36946 * 119.99461 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99553 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46900 * 180.02562 * 10 9 7 12 12 C 1.38227 * 120.00143 * 89.99696 * 11 10 9 13 13 C 1.38241 * 120.00031 * 180.02562 * 12 11 10 14 14 C 1.38230 * 120.00186 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00434 * 179.97438 * 14 13 12 16 16 N 1.46493 * 109.47082 * 89.99576 * 15 14 13 17 17 C 1.34784 * 119.99864 * 180.02562 * 16 15 14 18 18 O 1.21283 * 119.99649 * 359.72839 * 17 16 15 19 19 C 1.50694 * 119.99988 * 179.72721 * 17 16 15 20 20 C 1.53001 * 109.47168 * 179.97438 * 19 17 16 21 21 C 1.50699 * 109.47500 * 180.02562 * 20 19 17 22 22 C 1.38654 * 120.78909 * 269.72503 * 21 20 19 23 23 C 1.38200 * 119.16151 * 179.79589 * 22 21 20 24 24 N 1.31870 * 120.76630 * 0.48202 * 23 22 21 25 25 C 1.31870 * 121.72391 * 359.74453 * 24 23 22 26 26 C 1.38205 * 120.76467 * 0.02562 * 25 24 23 27 27 C 1.38239 * 119.99581 * 0.25258 * 14 13 12 28 28 C 1.38233 * 120.00183 * 359.48931 * 27 14 13 29 29 H 0.96997 * 120.00181 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99609 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47139 * 60.00204 * 10 9 7 32 32 H 1.08998 * 109.47399 * 299.99803 * 10 9 7 33 33 H 1.08005 * 120.00331 * 0.02562 * 12 11 10 34 34 H 1.08005 * 119.99820 * 179.97438 * 13 12 11 35 35 H 1.09007 * 109.46606 * 329.99826 * 15 14 13 36 36 H 1.09006 * 109.47204 * 210.00283 * 15 14 13 37 37 H 0.97000 * 120.00740 * 359.72841 * 16 15 14 38 38 H 1.08998 * 109.47224 * 299.99701 * 19 17 16 39 39 H 1.09002 * 109.47054 * 60.00213 * 19 17 16 40 40 H 1.09000 * 109.47339 * 299.99895 * 20 19 17 41 41 H 1.09002 * 109.46926 * 60.00175 * 20 19 17 42 42 H 1.08002 * 120.41470 * 359.97438 * 22 21 20 43 43 H 1.07997 * 119.61862 * 180.20109 * 23 22 21 44 44 H 1.07998 * 119.62362 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.41988 * 179.97438 * 26 25 24 46 46 H 1.08009 * 119.99658 * 179.72932 * 27 14 13 47 47 H 1.08003 * 119.99828 * 180.23150 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.5938 -2.1955 0.0023 12 6 6.2724 -2.0697 1.2000 13 6 7.6314 -1.8165 1.2011 14 6 8.3117 -1.6887 0.0046 15 6 9.7931 -1.4122 0.0058 16 7 10.5265 -2.6803 0.0053 17 6 11.8744 -2.6792 0.0067 18 8 12.4799 -1.6284 0.0034 19 6 12.6289 -3.9837 0.0125 20 6 14.1329 -3.7029 0.0123 21 6 14.8875 -5.0073 0.0174 22 6 15.2471 -5.6146 1.2109 23 6 15.9350 -6.8127 1.1763 24 7 16.2572 -7.3727 0.0267 25 6 15.9356 -6.8215 -1.1273 26 6 15.2436 -5.6259 -1.1712 27 6 7.6320 -1.8088 -1.1931 28 6 6.2740 -2.0672 -1.1943 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0014 31 1 3.8492 -3.0422 -0.8891 32 1 3.8485 -3.0426 0.8908 33 1 5.7409 -2.1691 2.1349 34 1 8.1615 -1.7178 2.1369 35 1 10.0553 -0.8411 0.8965 36 1 10.0566 -0.8396 -0.8836 37 1 10.0423 -3.5208 0.0084 38 1 12.3651 -4.5520 0.9043 39 1 12.3669 -4.5588 -0.8757 40 1 14.3964 -3.1347 -0.8798 41 1 14.3952 -3.1276 0.9002 42 1 14.9904 -5.1584 2.1556 43 1 16.2159 -7.2938 2.1015 44 1 16.2170 -7.3094 -2.0488 45 1 14.9835 -5.1792 -2.1194 46 1 8.1627 -1.7046 -2.1280 47 1 5.7437 -2.1648 -2.1301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753589286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:05 Heat of formation + Delta-G solvation = 2.982822 kcal Electronic energy + Delta-G solvation = -26416.076398 eV Core-core repulsion = 22562.437972 eV Total energy + Delta-G solvation = -3853.638427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24209 -40.83832 -40.17577 -37.11135 -35.93898 -35.60587 -33.87614 -32.39672 -32.08171 -31.87332 -31.46103 -28.76095 -26.61519 -25.31780 -24.35341 -23.81226 -23.64633 -22.54840 -21.76855 -21.28016 -19.88016 -18.44458 -17.54626 -17.44904 -17.03039 -16.81949 -16.72749 -16.60030 -16.41419 -16.19854 -15.87063 -15.43719 -14.97353 -14.80974 -14.75030 -14.58020 -14.38752 -14.36367 -14.07427 -13.93282 -13.50799 -13.34988 -13.17969 -13.14478 -13.09534 -12.85916 -12.63109 -12.20082 -11.93168 -11.92530 -11.92013 -11.77954 -11.07944 -11.04361 -10.47293 -10.39470 -10.12063 -10.05206 -9.84561 -9.67132 -9.34734 -8.05817 -5.39946 0.19860 0.23962 0.31113 0.48004 1.36273 1.38333 1.46089 1.64601 2.22446 2.45395 2.82899 2.91606 3.25686 3.57126 3.63468 3.66135 3.84000 3.84832 3.88385 3.92807 4.00698 4.12173 4.22247 4.23391 4.26155 4.27534 4.30610 4.54370 4.61483 4.68059 4.73557 4.78218 4.82393 4.87414 4.87763 4.96694 5.05414 5.08192 5.15275 5.17892 5.38795 5.43479 5.46195 5.58418 5.72079 5.77735 5.82799 6.03460 6.17868 6.54671 7.03663 7.07363 7.24146 7.78664 7.98567 9.15399 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028332 B = 0.001496 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.048854 B =18706.050413 C =19095.478989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.058 4.058 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.239 4.239 8 H 0.060 0.940 9 N -0.753 5.753 10 C 0.188 3.812 11 C -0.092 4.092 12 C -0.116 4.116 13 C -0.098 4.098 14 C -0.108 4.108 15 C 0.169 3.831 16 N -0.716 5.716 17 C 0.512 3.488 18 O -0.584 6.584 19 C -0.126 4.126 20 C -0.062 4.062 21 C -0.042 4.042 22 C -0.172 4.172 23 C 0.086 3.914 24 N -0.522 5.522 25 C 0.086 3.914 26 C -0.172 4.172 27 C -0.098 4.098 28 C -0.115 4.115 29 H 0.259 0.741 30 H 0.365 0.635 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.415 0.585 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.153 0.847 43 H 0.171 0.829 44 H 0.171 0.829 45 H 0.153 0.847 46 H 0.143 0.857 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.232 -12.001 0.039 37.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.369 4.369 8 H 0.078 0.922 9 N -0.398 5.398 10 C 0.063 3.937 11 C -0.093 4.093 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.108 4.108 15 C 0.046 3.954 16 N -0.368 5.368 17 C 0.300 3.700 18 O -0.465 6.465 19 C -0.165 4.165 20 C -0.100 4.100 21 C -0.050 4.050 22 C -0.191 4.191 23 C -0.070 4.070 24 N -0.232 5.232 25 C -0.070 4.070 26 C -0.191 4.191 27 C -0.117 4.117 28 C -0.134 4.134 29 H 0.068 0.932 30 H 0.198 0.802 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.251 0.749 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.170 0.830 43 H 0.189 0.811 44 H 0.189 0.811 45 H 0.170 0.830 46 H 0.161 0.839 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 35.902 -12.157 0.041 37.904 hybrid contribution -1.140 1.495 0.007 1.880 sum 34.762 -10.662 0.048 36.360 Atomic orbital electron populations 1.69875 1.07037 1.26765 1.59426 1.25457 0.96059 1.01090 1.02414 0.85439 0.78534 0.79828 0.78169 1.20353 1.21975 1.18090 1.19061 0.82482 0.93669 1.41706 0.92215 1.42702 1.02378 1.03739 1.91012 1.19727 0.87014 0.87763 0.99191 1.20146 0.94963 0.99757 0.94426 1.21222 0.94932 0.99657 0.97606 1.21215 0.93498 0.98483 0.98485 1.19832 0.95022 1.02623 0.93345 1.20042 0.86099 0.86359 1.02882 1.46059 1.06057 1.09884 1.74797 1.21145 0.82244 0.91880 0.74682 1.90719 1.68959 1.35301 1.51494 1.21622 0.93871 0.94237 1.06800 1.20286 0.92477 0.92686 1.04506 1.20417 0.95329 0.95818 0.93429 1.22324 1.00154 0.97025 0.99643 1.23141 0.94228 0.92999 0.96636 1.67691 1.20615 1.35316 0.99584 1.23143 0.94218 0.93099 0.96544 1.22322 1.00150 0.96966 0.99704 1.21222 0.93530 0.98439 0.98462 1.21227 0.94919 0.99601 0.97618 0.93219 0.80171 0.94651 0.94779 0.85786 0.83976 0.90913 0.90871 0.74880 0.86674 0.86675 0.90318 0.90315 0.82958 0.81143 0.81140 0.82955 0.83933 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.71 13.97 21.65 0.30 -62.41 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 3 Si 0.95 45.70 27.74 68.60 1.90 47.60 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.26 -11.27 6.52 99.48 0.65 -10.62 16 7 C -0.24 -13.64 10.47 84.03 0.88 -12.76 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 9 N -0.75 -35.32 5.40 -347.18 -1.87 -37.20 16 10 C 0.19 7.09 6.38 85.63 0.55 7.63 16 11 C -0.09 -2.73 5.25 -19.87 -0.10 -2.83 16 12 C -0.12 -2.96 9.70 22.27 0.22 -2.74 16 13 C -0.10 -1.95 9.70 22.27 0.22 -1.73 16 14 C -0.11 -1.94 5.25 -19.87 -0.10 -2.04 16 15 C 0.17 2.65 5.80 85.63 0.50 3.15 16 16 N -0.72 -8.64 5.55 -466.78 -2.59 -11.23 16 17 C 0.51 7.32 7.83 87.65 0.69 8.00 16 18 O -0.58 -13.51 15.98 -3.04 -0.05 -13.56 16 19 C -0.13 -0.92 5.68 29.85 0.17 -0.75 16 20 C -0.06 -0.59 4.68 29.85 0.14 -0.45 16 21 C -0.04 -0.41 5.17 -19.67 -0.10 -0.51 16 22 C -0.17 -1.63 9.82 22.36 0.22 -1.41 16 23 C 0.09 1.01 11.18 84.68 0.95 1.96 16 24 N -0.52 -8.13 10.36 -195.85 -2.03 -10.16 16 25 C 0.09 1.01 11.18 84.68 0.95 1.96 16 26 C -0.17 -1.63 9.82 22.36 0.22 -1.41 16 27 C -0.10 -1.93 9.70 22.27 0.22 -1.72 16 28 C -0.12 -2.93 9.70 22.27 0.22 -2.71 16 29 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.37 16.65 5.52 -92.71 -0.51 16.14 16 31 H 0.04 1.34 8.09 -2.39 -0.02 1.32 16 32 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 33 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.07 1.22 8.09 -2.38 -0.02 1.20 16 36 H 0.07 1.23 8.08 -2.38 -0.02 1.21 16 37 H 0.41 3.28 8.46 -92.71 -0.78 2.49 16 38 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 0.89 8.06 -2.39 -0.02 0.87 16 41 H 0.08 0.89 8.06 -2.39 -0.02 0.87 16 42 H 0.15 0.82 8.06 -2.91 -0.02 0.79 16 43 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 44 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 46 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 47 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -76.73 402.12 1.57 -75.16 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.37 Total: 23.14 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 6.27 Total: -11.35 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -6.19 Total: -120.99 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.05 Total: -13.56 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Total: -76.73 1.57 -75.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753589286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.146 kcal (2) G-P(sol) polarization free energy of solvation -76.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds