Wall clock time and date at job start Tue Mar 31 2020 22:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00000 * 2 1 4 4 H 1.48497 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46748 * 299.99425 * 3 2 1 6 6 H 1.48494 * 109.47446 * 59.99355 * 3 2 1 7 7 C 1.38813 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99509 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00349 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00190 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47312 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.81163 * 51.66530 * 11 10 9 13 13 C 1.54892 * 110.75651 * 288.33220 * 11 10 9 14 14 C 1.54265 * 104.19387 * 203.73855 * 13 11 10 15 15 C 1.53875 * 106.59954 * 23.60909 * 14 13 11 16 16 C 1.54273 * 106.59983 * 359.97438 * 15 14 13 17 17 H 1.09000 * 110.48349 * 95.19745 * 16 15 14 18 18 N 1.46499 * 110.48727 * 217.71231 * 16 15 14 19 19 C 1.34777 * 119.99665 * 273.82192 * 18 16 15 20 20 O 1.21563 * 120.00283 * 359.72077 * 19 18 16 21 21 C 1.47774 * 119.99699 * 179.72378 * 19 18 16 22 22 C 1.40657 * 119.69836 * 359.97438 * 21 19 18 23 23 C 1.35842 * 120.87210 * 179.97438 * 22 21 19 24 24 C 1.40396 * 119.84835 * 359.97438 * 23 22 21 25 25 C 1.40631 * 121.97290 * 180.02562 * 24 23 22 26 26 C 1.36221 * 118.73257 * 179.97438 * 25 24 23 27 27 N 1.32596 * 121.89846 * 359.97438 * 26 25 24 28 28 C 1.31242 * 122.73925 * 0.02562 * 27 26 25 29 29 C 1.40543 * 119.88982 * 359.97438 * 28 27 26 30 30 C 1.38570 * 119.69674 * 179.72740 * 21 19 18 31 31 H 0.96997 * 119.99975 * 0.02562 * 1 2 3 32 32 H 0.96997 * 119.99341 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47112 * 59.99665 * 10 9 7 34 34 H 1.09003 * 109.47357 * 300.00002 * 10 9 7 35 35 H 1.09002 * 110.48584 * 85.06271 * 13 11 10 36 36 H 1.09001 * 110.48549 * 322.41740 * 13 11 10 37 37 H 1.08996 * 110.03696 * 264.32187 * 14 13 11 38 38 H 1.08999 * 110.03143 * 142.88926 * 14 13 11 39 39 H 1.08992 * 110.03524 * 240.71396 * 15 14 13 40 40 H 1.09000 * 110.03071 * 119.28207 * 15 14 13 41 41 H 0.97001 * 119.99790 * 93.53905 * 18 16 15 42 42 H 1.08003 * 119.56086 * 359.97438 * 22 21 19 43 43 H 1.08000 * 120.07335 * 180.02562 * 23 22 21 44 44 H 1.08002 * 120.63343 * 359.96801 * 25 24 23 45 45 H 1.08002 * 119.05023 * 180.02562 * 26 25 24 46 46 H 1.08004 * 120.05504 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.34397 * 359.97283 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2127 6 1 1.8914 2.3966 1.2123 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3315 -4.7036 -0.7978 13 6 0.3614 -4.9406 1.3764 14 6 -0.0917 -6.4138 1.4414 15 6 0.8254 -7.1984 0.4868 16 6 1.8034 -6.1744 -0.1256 17 1 2.7369 -6.1551 0.4368 18 7 2.0605 -6.4893 -1.5331 19 6 3.0300 -7.3661 -1.8612 20 8 3.6945 -7.8918 -0.9896 21 6 3.2852 -7.6883 -3.2806 22 6 2.5122 -7.0766 -4.2840 23 6 2.7268 -7.3549 -5.5961 24 6 3.7322 -8.2638 -5.9623 25 6 3.9929 -8.5841 -7.3066 26 6 4.9848 -9.4746 -7.5872 27 7 5.7068 -10.0433 -6.6314 28 6 5.5202 -9.7927 -5.3567 29 6 4.5208 -8.8878 -4.9598 30 6 4.2874 -8.5863 -3.6113 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6848 -3.7145 0.8905 34 1 2.6848 -3.7146 -0.8895 35 1 -0.4997 -4.2742 1.4248 36 1 1.0611 -4.7207 2.1827 37 1 -1.1289 -6.5001 1.1178 38 1 0.0156 -6.7929 2.4578 39 1 0.2333 -7.6654 -0.3001 40 1 1.3776 -7.9581 1.0399 41 1 1.5302 -6.0697 -2.2285 42 1 1.7378 -6.3763 -4.0074 43 1 2.1258 -6.8774 -6.3560 44 1 3.4175 -8.1328 -8.1014 45 1 5.1896 -9.7240 -8.6179 46 1 6.1342 -10.2805 -4.6140 47 1 4.8813 -9.0502 -2.8377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753900401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:16 Heat of formation + Delta-G solvation = 17.224870 kcal Electronic energy + Delta-G solvation = -28053.277450 eV Core-core repulsion = 24200.256605 eV Total energy + Delta-G solvation = -3853.020845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26256 -40.03176 -38.22805 -37.13384 -34.52694 -33.78952 -33.35810 -31.61108 -31.43249 -30.11645 -28.63057 -27.69393 -25.07875 -24.37129 -24.25889 -22.66975 -22.16357 -21.36435 -20.31032 -19.80389 -18.38120 -18.10433 -17.20006 -17.05121 -16.36253 -16.00359 -15.43237 -15.17583 -14.87620 -14.66453 -14.51385 -14.37430 -14.19800 -13.94801 -13.70231 -13.60049 -13.27035 -13.22741 -12.91477 -12.42121 -12.27212 -12.17068 -11.96364 -11.65288 -11.30729 -10.99255 -10.93577 -10.78217 -10.59342 -10.49441 -10.35741 -10.27070 -10.13430 -9.98859 -9.83612 -9.72256 -9.52602 -9.03744 -8.89565 -8.47427 -6.93850 -5.79013 -3.07244 -0.14598 0.33492 1.43454 2.25823 3.03477 3.14368 3.41614 3.47911 3.49783 3.72451 4.00426 4.13102 4.27741 4.34043 4.48865 4.54492 4.63314 4.70164 4.75301 4.80320 4.85926 5.00019 5.19281 5.28855 5.37850 5.42359 5.49810 5.52812 5.56492 5.60528 5.62545 5.72344 5.78883 5.86751 5.90579 5.95302 6.05469 6.15607 6.19095 6.21597 6.27260 6.32262 6.45669 6.53206 6.55697 6.74673 6.87090 7.43154 7.56056 7.69199 8.10746 8.40151 9.51639 10.09083 10.44080 11.43932 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011355 B = 0.002460 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.245760 B =11377.154108 C =13059.752436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.080 0.920 13 C -0.111 4.111 14 C -0.123 4.123 15 C -0.132 4.132 16 C 0.147 3.853 17 H 0.096 0.904 18 N -0.711 5.711 19 C 0.557 3.443 20 O -0.537 6.537 21 C -0.133 4.133 22 C -0.069 4.069 23 C -0.116 4.116 24 C -0.008 4.008 25 C -0.159 4.159 26 C 0.083 3.917 27 N -0.493 5.493 28 C 0.158 3.842 29 C -0.124 4.124 30 C -0.017 4.017 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.401 0.599 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.154 0.846 46 H 0.167 0.833 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 -21.193 -11.231 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.034 3.966 11 C -0.121 4.121 12 H 0.099 0.901 13 C -0.149 4.149 14 C -0.161 4.161 15 C -0.171 4.171 16 C 0.042 3.958 17 H 0.114 0.886 18 N -0.362 5.362 19 C 0.344 3.656 20 O -0.416 6.416 21 C -0.136 4.136 22 C -0.089 4.089 23 C -0.134 4.134 24 C -0.014 4.014 25 C -0.179 4.179 26 C -0.060 4.060 27 N -0.200 5.200 28 C -0.013 4.013 29 C -0.126 4.126 30 C -0.038 4.038 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.236 0.764 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.172 0.828 46 H 0.184 0.816 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.580 -21.999 -10.996 25.017 hybrid contribution -0.886 1.900 -0.201 2.105 sum 3.694 -20.099 -11.197 23.302 Atomic orbital electron populations 1.69664 1.05077 1.25507 1.58022 1.24728 0.95527 0.97658 1.03113 0.86131 0.78837 0.84150 0.77188 1.20565 1.21890 1.21856 1.19275 0.91057 0.84174 1.42341 0.91222 1.42330 1.05809 0.99878 1.89469 1.20647 0.92913 0.85157 0.97931 1.22561 0.97870 0.93154 0.98564 0.90128 1.22293 1.00775 0.95236 0.96584 1.22125 0.98987 0.95854 0.99137 1.22512 0.97455 0.98090 0.99021 1.21955 0.99214 0.94098 0.80541 0.88593 1.45993 1.36377 1.44507 1.09285 1.18166 0.80080 0.79320 0.87989 1.90775 1.48531 1.52143 1.50110 1.20015 0.99342 1.00816 0.93446 1.21101 0.97857 0.97396 0.92556 1.20884 0.97824 0.98103 0.96615 1.18310 0.94688 0.95060 0.93295 1.21953 1.00086 1.00092 0.95778 1.22271 0.91776 0.93118 0.98850 1.67490 1.26716 1.24544 1.01291 1.23336 0.92937 0.92009 0.93043 1.19011 0.99201 1.00506 0.93918 1.21456 0.94241 0.93297 0.94777 0.93597 0.78280 0.96130 0.96449 0.90707 0.91128 0.91914 0.91910 0.91747 0.91475 0.76357 0.84875 0.84388 0.84179 0.82846 0.81557 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -17.96 5.52 -59.91 -0.33 -18.29 16 10 C 0.16 3.15 5.70 -4.05 -0.02 3.13 16 11 C -0.10 -1.54 2.50 -88.64 -0.22 -1.76 16 12 H 0.08 1.19 8.02 -51.92 -0.42 0.78 16 13 C -0.11 -1.60 6.20 -25.07 -0.16 -1.75 16 14 C -0.12 -1.44 6.80 -25.61 -0.17 -1.61 16 15 C -0.13 -1.56 6.53 -25.61 -0.17 -1.73 16 16 C 0.15 1.96 2.60 -66.28 -0.17 1.78 16 17 H 0.10 1.45 7.58 -51.93 -0.39 1.06 16 18 N -0.71 -8.53 5.06 -53.17 -0.27 -8.80 16 19 C 0.56 7.26 7.76 -12.36 -0.10 7.17 16 20 O -0.54 -8.63 16.01 5.31 0.09 -8.54 16 21 C -0.13 -1.44 5.87 -104.96 -0.62 -2.05 16 22 C -0.07 -0.62 9.44 -39.53 -0.37 -0.99 16 23 C -0.12 -0.95 9.77 -39.63 -0.39 -1.33 16 24 C -0.01 -0.08 5.75 -106.74 -0.61 -0.69 16 25 C -0.16 -1.20 9.87 -39.40 -0.39 -1.59 16 26 C 0.08 0.66 11.07 -17.95 -0.20 0.47 16 27 N -0.49 -4.80 10.30 -13.11 -0.14 -4.94 16 28 C 0.16 1.39 11.05 -16.94 -0.19 1.20 16 29 C -0.12 -1.19 5.74 -106.87 -0.61 -1.80 16 30 C -0.02 -0.17 9.37 -38.75 -0.36 -0.53 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.38 9.82 7.67 -40.82 -0.31 9.51 16 33 H 0.02 0.42 7.99 -51.93 -0.41 0.01 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.40 4.02 6.51 -40.82 -0.27 3.76 16 42 H 0.13 0.95 6.34 -52.48 -0.33 0.61 16 43 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 47 H 0.15 1.38 7.61 -52.49 -0.40 0.98 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -33.65 389.10 -10.80 -44.45 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.72 Total: 9.39 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -5.00 Total: -9.33 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.01 Total: -59.12 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.65 -10.80 -44.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753900401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.674 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds