Wall clock time and date at job start Tue Mar 31 2020 22:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39235 * 119.14787 * 2 1 4 4 C 1.36635 * 119.89686 * 180.02562 * 3 2 1 5 5 C 1.40795 * 118.15923 * 0.02562 * 4 3 2 6 6 C 1.40477 * 121.25381 * 180.02562 * 5 4 3 7 7 C 1.36311 * 120.08681 * 179.70362 * 6 5 4 8 8 C 1.38914 * 121.05026 * 0.55681 * 7 6 5 9 9 C 1.38710 * 120.73013 * 359.44133 * 8 7 6 10 10 C 1.47433 * 120.32964 * 180.29793 * 9 8 7 11 11 O 1.21602 * 119.99816 * 179.97438 * 10 9 8 12 12 N 1.34777 * 120.00178 * 359.97438 * 10 9 8 13 13 C 1.46505 * 119.99869 * 180.02562 * 12 10 9 14 14 C 1.53036 * 109.46122 * 275.07172 * 13 12 10 15 15 C 1.53187 * 109.31373 * 178.61657 * 14 13 12 16 16 N 1.46931 * 108.77836 * 54.63300 * 15 14 13 17 17 C 1.36939 * 120.63039 * 126.41156 * 16 15 14 18 18 H 1.07998 * 119.99913 * 331.83141 * 17 16 15 19 19 C 1.38812 * 119.99783 * 151.82840 * 17 16 15 20 20 N 1.31626 * 119.99566 * 343.07884 * 19 17 16 21 21 Si 1.86794 * 120.00128 * 163.08315 * 19 17 16 22 22 H 1.48499 * 109.47196 * 59.99268 * 21 19 17 23 23 H 1.48495 * 109.47369 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46920 * 299.99831 * 21 19 17 25 25 C 1.46922 * 118.73730 * 306.39821 * 16 15 14 26 26 C 1.53041 * 109.45798 * 155.00521 * 13 12 10 27 27 C 1.41554 * 118.94766 * 359.97438 * 5 4 3 28 28 N 1.31234 * 119.15577 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47133 * 269.96951 * 1 2 3 30 30 H 1.08994 * 109.47554 * 29.97481 * 1 2 3 31 31 H 1.09003 * 109.46471 * 149.97621 * 1 2 3 32 32 H 1.07997 * 120.04911 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.91803 * 180.02562 * 4 3 2 34 34 H 1.07998 * 119.95695 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.47927 * 180.29938 * 7 6 5 36 36 H 1.07998 * 119.63173 * 179.71168 * 8 7 6 37 37 H 0.96995 * 120.00159 * 0.02562 * 12 10 9 38 38 H 1.09003 * 109.45761 * 35.03354 * 13 12 10 39 39 H 1.09000 * 109.49942 * 298.56564 * 14 13 12 40 40 H 1.09003 * 109.49976 * 58.66270 * 14 13 12 41 41 H 1.09004 * 109.58630 * 294.84554 * 15 14 13 42 42 H 1.08996 * 109.70720 * 174.48971 * 15 14 13 43 43 H 0.97006 * 119.99309 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58427 * 293.81437 * 25 16 15 45 45 H 1.09001 * 109.70335 * 173.46453 * 25 16 15 46 46 H 1.09002 * 109.49447 * 301.33418 * 26 13 12 47 47 H 1.09000 * 109.49878 * 61.40148 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2160 0.0000 4 6 3.5514 1.2339 -0.0005 5 6 4.2320 0.0014 -0.0016 6 6 5.6356 -0.0561 -0.0017 7 6 6.2701 -1.2625 0.0034 8 6 5.5504 -2.4507 -0.0030 9 6 4.1633 -2.4391 -0.0030 10 6 3.4083 -3.7055 -0.0031 11 8 2.1924 -3.6883 -0.0026 12 7 4.0656 -4.8820 -0.0037 13 6 3.3153 -6.1403 -0.0044 14 6 2.9446 -6.5137 1.4327 15 6 2.1306 -7.8114 1.4251 16 7 2.8937 -8.8442 0.7110 17 6 3.1489 -10.0545 1.2986 18 1 3.2180 -10.1289 2.3738 19 6 3.3187 -11.1857 0.5123 20 7 2.9157 -11.1826 -0.7408 21 14 4.1189 -12.7123 1.2323 22 1 3.3173 -13.1941 2.3858 23 1 4.1818 -13.7739 0.1959 24 1 5.4933 -12.3826 1.6880 25 6 3.3775 -8.5538 -0.6455 26 6 4.1775 -7.2477 -0.6147 27 6 3.4789 -1.1972 -0.0016 28 7 2.1464 -1.1461 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3632 -0.8898 -0.5142 32 1 1.6321 2.1437 0.0004 33 1 4.0941 2.1676 -0.0001 34 1 6.2127 0.8567 -0.0013 35 1 7.3496 -1.2953 0.0082 36 1 6.0766 -3.3938 -0.0035 37 1 5.0355 -4.8957 -0.0037 38 1 2.4065 -6.0209 -0.5943 39 1 3.8533 -6.6577 2.0172 40 1 2.3501 -5.7140 1.8746 41 1 1.1801 -7.6436 0.9186 42 1 1.9465 -8.1358 2.4493 43 1 3.0347 -11.9730 -1.2904 44 1 2.5287 -8.4465 -1.3210 45 1 4.0175 -9.3664 -0.9892 46 1 4.4605 -6.9704 -1.6301 47 1 5.0749 -7.3844 -0.0113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078112327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:17 Heat of formation + Delta-G solvation = 43.147166 kcal Electronic energy + Delta-G solvation = -28739.775586 eV Core-core repulsion = 24887.878816 eV Total energy + Delta-G solvation = -3851.896770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.21359 -39.40385 -37.55826 -37.03618 -34.33986 -33.68205 -32.32481 -32.01848 -30.66570 -29.93074 -29.09978 -28.09727 -25.19415 -24.20271 -23.52126 -22.66872 -22.19119 -21.64649 -20.16636 -19.30420 -18.33641 -17.87875 -16.80621 -16.60673 -16.00349 -15.48885 -15.11947 -15.01514 -14.76168 -14.34021 -14.21996 -14.06231 -13.74989 -13.49400 -13.25906 -13.15652 -13.11083 -12.87665 -12.50360 -12.45792 -12.30122 -12.25264 -11.64448 -11.57785 -11.41146 -11.08015 -10.81427 -10.72038 -10.68959 -10.44069 -10.23014 -9.99645 -9.92665 -9.71885 -9.52994 -9.13560 -8.96534 -8.65380 -8.47393 -8.38170 -6.64701 -5.76531 -3.18611 -0.07879 0.54410 1.54102 2.51061 3.29592 3.36052 3.40942 3.45721 3.46977 3.95669 3.98373 4.27476 4.37730 4.50918 4.52060 4.56622 4.74068 4.81258 4.99252 5.08371 5.26277 5.36484 5.39410 5.44561 5.50724 5.57404 5.59711 5.63750 5.66520 5.77472 5.86229 5.90847 5.95063 6.03817 6.13370 6.23413 6.33788 6.40626 6.52102 6.58253 6.64379 6.65744 6.85494 7.00916 7.05391 7.35712 7.63975 7.78792 7.82800 7.91042 8.47815 8.56554 9.23947 9.87265 10.44747 11.32390 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.002365 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.614939 B =11835.428123 C =12665.850674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.158 3.842 3 C -0.172 4.172 4 C -0.058 4.058 5 C -0.117 4.117 6 C -0.074 4.074 7 C -0.127 4.127 8 C -0.065 4.065 9 C -0.104 4.104 10 C 0.548 3.452 11 O -0.499 6.499 12 N -0.724 5.724 13 C 0.154 3.846 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.175 3.825 26 C -0.146 4.146 27 C 0.168 3.832 28 N -0.436 5.436 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.391 0.609 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 27.555 0.016 28.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.005 3.995 3 C -0.192 4.192 4 C -0.084 4.084 5 C -0.120 4.120 6 C -0.093 4.093 7 C -0.145 4.145 8 C -0.085 4.085 9 C -0.108 4.108 10 C 0.333 3.667 11 O -0.373 6.373 12 N -0.376 5.376 13 C 0.051 3.949 14 C -0.179 4.179 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.048 3.952 26 C -0.186 4.186 27 C 0.044 3.956 28 N -0.144 5.144 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.225 0.775 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.382 26.523 -0.106 26.883 hybrid contribution 1.560 0.070 0.327 1.596 sum 5.942 26.593 0.221 27.249 Atomic orbital electron populations 1.20793 0.88515 1.03766 1.03409 1.21737 0.97613 0.88031 0.92136 1.21789 0.95063 0.99412 1.02933 1.21432 0.94495 0.96964 0.95478 1.18828 0.94794 0.94025 1.04320 1.21126 0.92559 0.98650 0.96921 1.20830 1.00605 0.91927 1.01159 1.21489 0.92624 0.99201 0.95225 1.20072 0.93177 0.92875 1.04650 1.17916 0.87720 0.83030 0.78049 1.90849 1.12615 1.86814 1.47013 1.46294 1.09919 1.05993 1.75434 1.21017 0.95386 0.81103 0.97426 1.22369 1.00759 0.99005 0.95756 1.20872 0.92680 0.87785 0.96559 1.44085 1.60513 1.12417 1.14536 1.19152 1.42908 0.84542 0.91525 0.91718 1.25055 1.00693 0.97330 0.96629 1.70027 1.48177 1.29072 1.07541 0.86361 0.79661 0.82632 0.78067 1.20894 1.21659 1.21082 1.20730 0.95799 0.92331 0.86312 1.22537 0.99549 0.97542 0.99002 1.18599 0.89401 0.91352 0.96253 1.68193 1.07703 1.27653 1.10860 0.90064 0.90690 0.89787 0.84509 0.84261 0.84980 0.84823 0.84695 0.77474 0.89974 0.92429 0.92686 0.96167 0.92617 0.93575 0.96114 0.89069 0.92772 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.15 36.01 0.37 -0.61 16 2 C 0.16 1.85 6.78 -82.48 -0.56 1.29 16 3 C -0.17 -1.49 9.64 -39.79 -0.38 -1.87 16 4 C -0.06 -0.48 9.89 -39.19 -0.39 -0.87 16 5 C -0.12 -1.25 5.74 -106.82 -0.61 -1.87 16 6 C -0.07 -0.59 9.75 -39.43 -0.38 -0.97 16 7 C -0.13 -1.00 9.93 -40.02 -0.40 -1.40 16 8 C -0.06 -0.65 9.52 -39.16 -0.37 -1.02 16 9 C -0.10 -1.45 5.90 -104.61 -0.62 -2.07 16 10 C 0.55 9.22 7.73 -12.52 -0.10 9.13 16 11 O -0.50 -10.32 14.85 5.28 0.08 -10.24 16 12 N -0.72 -11.06 5.03 -54.84 -0.28 -11.33 16 13 C 0.15 2.82 2.41 -67.89 -0.16 2.65 16 14 C -0.14 -2.66 5.65 -26.62 -0.15 -2.81 16 15 C 0.15 3.29 6.52 -3.71 -0.02 3.27 16 16 N -0.59 -15.10 2.99 -172.32 -0.52 -15.61 16 17 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 19 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 20 N -0.90 -26.34 11.19 55.49 0.62 -25.72 16 21 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 26 C -0.15 -2.75 5.55 -26.61 -0.15 -2.90 16 27 C 0.17 2.39 6.61 -84.58 -0.56 1.83 16 28 N -0.44 -6.77 8.33 -7.01 -0.06 -6.83 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.14 1.03 6.37 -52.49 -0.33 0.70 16 37 H 0.39 4.74 6.62 -40.82 -0.27 4.46 16 38 H 0.08 1.70 7.58 -51.93 -0.39 1.30 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.41 6.07 -51.93 -0.31 2.09 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -35.02 381.08 -10.95 -45.97 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.77 Total: 2.53 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -4.74 Total: -1.20 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.23 Total: -59.50 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.02 -10.95 -45.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078112327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.117 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds