Wall clock time and date at job start Tue Mar 31 2020 22:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39351 * 119.58383 * 2 1 4 4 C 1.36128 * 121.09009 * 179.97438 * 3 2 1 5 5 C 1.40529 * 119.81438 * 0.04660 * 4 3 2 6 6 N 1.33817 * 120.81836 * 179.97438 * 5 4 3 7 7 C 1.30795 * 121.72334 * 179.97438 * 6 5 4 8 8 C 1.50703 * 119.23774 * 180.02562 * 7 6 5 9 9 C 1.40607 * 121.53447 * 359.97438 * 7 6 5 10 10 C 1.47763 * 120.26877 * 179.97438 * 9 7 6 11 11 O 1.21560 * 119.99692 * 55.73348 * 10 9 7 12 12 N 1.34773 * 119.99820 * 235.73972 * 10 9 7 13 13 C 1.46963 * 120.59339 * 176.05717 * 12 10 9 14 14 C 1.53374 * 108.63697 * 235.20036 * 13 12 10 15 15 N 1.46966 * 108.63291 * 310.57657 * 14 13 12 16 16 C 1.36929 * 120.59168 * 235.22460 * 15 14 13 17 17 H 1.08003 * 120.00570 * 34.77923 * 16 15 14 18 18 C 1.38816 * 120.00089 * 214.77718 * 16 15 14 19 19 N 1.31618 * 119.99843 * 5.51091 * 18 16 15 20 20 Si 1.86793 * 120.00217 * 185.50432 * 18 16 15 21 21 H 1.48497 * 109.47482 * 90.00328 * 20 18 16 22 22 H 1.48506 * 109.47454 * 210.00319 * 20 18 16 23 23 H 1.48498 * 109.47596 * 330.00144 * 20 18 16 24 24 C 1.46963 * 118.81249 * 55.22484 * 15 14 13 25 25 C 1.46962 * 120.59763 * 356.03034 * 12 10 9 26 26 C 1.39012 * 119.46197 * 0.27747 * 9 7 6 27 27 C 1.40528 * 117.96481 * 359.50647 * 26 9 7 28 28 C 1.36141 * 119.58612 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46933 * 269.97725 * 1 2 3 30 30 H 1.09004 * 109.47595 * 29.97370 * 1 2 3 31 31 H 1.08999 * 109.47404 * 149.97731 * 1 2 3 32 32 H 1.08004 * 119.45206 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.09309 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.46792 * 274.82817 * 8 7 6 35 35 H 1.08995 * 109.46684 * 34.82785 * 8 7 6 36 36 H 1.09000 * 109.47157 * 154.83057 * 8 7 6 37 37 H 1.09006 * 109.60961 * 354.94126 * 13 12 10 38 38 H 1.08999 * 109.61212 * 115.45301 * 13 12 10 39 39 H 1.09002 * 109.60666 * 70.31786 * 14 13 12 40 40 H 1.08997 * 109.61502 * 190.82673 * 14 13 12 41 41 H 0.97000 * 120.00216 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.60961 * 185.03229 * 24 15 14 43 43 H 1.08996 * 109.75184 * 64.60075 * 24 15 14 44 44 H 1.09006 * 109.60755 * 244.54515 * 25 12 10 45 45 H 1.09007 * 109.60987 * 5.04963 * 25 12 10 46 46 H 1.07997 * 121.01695 * 179.74722 * 26 9 7 47 47 H 1.08000 * 120.18985 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1949 1.2118 0.0000 4 6 3.5557 1.2476 0.0005 5 6 4.2862 0.0471 0.0001 6 7 5.6243 0.0589 0.0001 7 6 6.3218 -1.0476 0.0002 8 6 7.8268 -0.9691 0.0007 9 6 5.7001 -2.3088 0.0008 10 6 6.5155 -3.5411 0.0003 11 8 7.3459 -3.7207 0.8697 12 7 6.3386 -4.4657 -0.9641 13 6 7.2001 -5.6547 -1.0274 14 6 7.8351 -5.7261 -2.4217 15 7 6.7768 -5.5638 -3.4285 16 6 6.5967 -6.5036 -4.4080 17 1 6.7683 -7.5479 -4.1926 18 6 6.1937 -6.1140 -5.6780 19 7 6.0894 -4.8354 -5.9720 20 14 5.7995 -7.4045 -6.9697 21 1 4.3595 -7.7590 -6.8920 22 1 6.1040 -6.8638 -8.3188 23 1 6.6215 -8.6168 -6.7253 24 6 5.9153 -4.3749 -3.3652 25 6 5.2804 -4.3035 -1.9709 26 6 4.3122 -2.3869 -0.0045 27 6 3.5845 -1.1848 0.0004 28 6 2.1791 -1.1839 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6392 2.1380 0.0004 33 1 4.0725 2.1960 0.0009 34 1 8.1854 -0.8636 -1.0232 35 1 8.1453 -0.1078 0.5879 36 1 8.2379 -1.8790 0.4378 37 1 7.9828 -5.5799 -0.2725 38 1 6.6027 -6.5492 -0.8512 39 1 8.5692 -4.9278 -2.5307 40 1 8.3203 -6.6932 -2.5537 41 1 5.8074 -4.5631 -6.8592 42 1 5.1325 -4.4496 -4.1201 43 1 6.5102 -3.4790 -3.5425 44 1 4.5462 -5.1019 -1.8618 45 1 4.7950 -3.3364 -1.8389 46 1 3.8086 -3.3423 -0.0082 47 1 1.6354 -2.1171 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130205263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:03 Heat of formation + Delta-G solvation = 46.481767 kcal Electronic energy + Delta-G solvation = -29552.209102 eV Core-core repulsion = 25700.456931 eV Total energy + Delta-G solvation = -3851.752171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.18506 -39.59842 -37.65668 -36.76885 -34.19114 -33.51814 -32.90580 -31.53577 -30.65665 -30.11560 -29.17550 -27.07030 -25.99395 -24.88599 -23.47175 -23.02080 -22.18840 -21.87089 -20.84773 -19.11991 -18.27449 -17.32831 -16.66807 -16.30685 -15.93378 -15.30808 -15.05168 -14.80865 -14.63004 -14.57886 -14.25037 -13.81520 -13.77896 -13.69239 -13.40937 -13.31687 -13.21875 -13.01693 -12.73030 -12.51042 -12.42510 -11.96080 -11.81481 -11.77175 -11.50237 -11.31468 -11.03140 -10.93491 -10.79725 -10.56908 -10.53969 -10.27362 -10.12182 -9.95313 -9.83777 -9.34037 -8.69197 -8.61378 -8.35291 -8.24756 -6.67820 -5.90126 -3.44487 0.19523 0.60294 1.81180 2.54872 2.93272 3.29879 3.33701 3.37595 3.38903 3.95625 4.09926 4.37410 4.40317 4.50898 4.55796 4.61786 4.79474 4.93859 4.99232 5.20704 5.25398 5.29499 5.31073 5.35103 5.52994 5.62965 5.68428 5.71920 5.72463 5.75407 5.80141 5.83873 5.88895 5.96097 6.04302 6.10949 6.13579 6.19848 6.29771 6.32686 6.38810 6.44160 6.69825 6.73723 6.85329 7.15895 7.45177 7.66940 7.75203 7.87500 8.35877 8.37211 9.08845 9.67727 10.27851 11.16899 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011569 B = 0.003435 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.714419 B = 8149.265254 C = 9578.914060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.093 4.093 4 C -0.095 4.095 5 C 0.141 3.859 6 N -0.479 5.479 7 C 0.205 3.795 8 C -0.123 4.123 9 C -0.165 4.165 10 C 0.561 3.439 11 O -0.546 6.546 12 N -0.584 5.584 13 C 0.095 3.905 14 C 0.131 3.869 15 N -0.591 5.591 16 C -0.259 4.259 17 H 0.066 0.934 18 C 0.010 3.990 19 N -0.904 5.904 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.160 3.840 25 C 0.071 3.929 26 C -0.021 4.021 27 C -0.108 4.108 28 C -0.088 4.088 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.025 0.975 40 H 0.068 0.932 41 H 0.256 0.744 42 H 0.102 0.898 43 H 0.023 0.977 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.145 0.855 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.774 9.560 12.248 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.113 4.113 5 C 0.019 3.981 6 N -0.188 5.188 7 C 0.052 3.948 8 C -0.180 4.180 9 C -0.170 4.170 10 C 0.347 3.653 11 O -0.426 6.426 12 N -0.315 5.315 13 C -0.028 4.028 14 C 0.004 3.996 15 N -0.314 5.314 16 C -0.389 4.389 17 H 0.084 0.916 18 C -0.190 4.190 19 N -0.548 5.548 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.203 1.203 24 C 0.034 3.966 25 C -0.053 4.053 26 C -0.047 4.047 27 C -0.110 4.110 28 C -0.107 4.107 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.120 0.880 43 H 0.041 0.959 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.163 0.837 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.032 10.367 12.489 18.110 hybrid contribution -0.770 -1.374 -0.909 1.819 sum -8.803 8.993 11.580 17.102 Atomic orbital electron populations 1.20822 0.90748 1.03120 1.02426 1.19651 0.96492 0.92920 1.00169 1.20825 0.93916 0.97773 0.98790 1.20773 0.93495 0.96920 1.00154 1.18937 0.89381 0.92697 0.97075 1.67820 1.06392 1.29908 1.14657 1.21391 0.97241 0.86289 0.89853 1.21051 0.88040 1.05168 1.03758 1.20794 0.94435 0.95425 1.06379 1.18017 0.82925 0.82518 0.81807 1.90716 1.36386 1.78259 1.37248 1.48042 1.33895 1.21787 1.27779 1.22299 0.94193 0.85983 1.00368 1.21332 0.91052 0.99765 0.87433 1.43906 1.32626 1.23735 1.31092 1.19177 1.43053 0.88067 0.88561 0.91649 1.25298 1.00715 0.95945 0.97015 1.69909 1.50402 1.13760 1.20681 0.86230 0.78212 0.80868 0.81053 1.21303 1.21550 1.20292 1.21174 0.95281 0.89124 0.91039 1.22939 0.89829 1.00764 0.91796 1.21910 0.92486 0.98200 0.92148 1.18697 0.94732 0.93564 1.03987 1.20877 0.92000 0.98421 0.99414 0.91065 0.91345 0.91263 0.85316 0.84618 0.89859 0.90126 0.88427 0.89757 0.91684 0.95748 0.91320 0.93353 0.88009 0.95889 0.91547 0.90924 0.83690 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 9.98 36.00 0.36 -0.39 16 2 C -0.09 -0.88 5.84 -104.97 -0.61 -1.49 16 3 C -0.09 -0.88 9.58 -39.93 -0.38 -1.26 16 4 C -0.09 -1.10 9.97 -39.48 -0.39 -1.49 16 5 C 0.14 2.02 6.61 -84.79 -0.56 1.46 16 6 N -0.48 -7.53 10.20 -6.93 -0.07 -7.61 16 7 C 0.21 3.29 6.82 -82.14 -0.56 2.73 16 8 C -0.12 -1.77 9.85 36.01 0.35 -1.42 16 9 C -0.17 -2.65 4.86 -104.82 -0.51 -3.16 16 10 C 0.56 9.93 6.50 -12.37 -0.08 9.85 16 11 O -0.55 -10.68 14.56 5.31 0.08 -10.60 16 12 N -0.58 -10.47 2.95 -173.63 -0.51 -10.98 16 13 C 0.10 1.70 6.58 -3.60 -0.02 1.67 16 14 C 0.13 2.67 6.67 -3.59 -0.02 2.65 16 15 N -0.59 -14.13 2.95 -172.04 -0.51 -14.64 16 16 C -0.26 -6.75 9.55 -15.06 -0.14 -6.90 16 17 H 0.07 1.67 7.83 -52.48 -0.41 1.26 16 18 C 0.01 0.25 5.14 -17.43 -0.09 0.16 16 19 N -0.90 -25.11 10.99 55.49 0.61 -24.50 16 20 Si 0.91 20.81 29.56 -169.99 -5.02 15.78 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.16 3.63 5.43 -3.60 -0.02 3.61 16 25 C 0.07 1.27 5.81 -3.60 -0.02 1.25 16 26 C -0.02 -0.30 7.32 -38.43 -0.28 -0.58 16 27 C -0.11 -1.44 5.74 -106.82 -0.61 -2.06 16 28 C -0.09 -0.95 9.38 -39.47 -0.37 -1.32 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.07 0.42 8.07 -51.93 -0.42 0.01 16 32 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.53 5.52 -51.93 -0.29 1.24 16 37 H 0.08 1.45 7.01 -51.93 -0.36 1.08 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.10 2.55 6.11 -51.93 -0.32 2.23 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.07 1.19 4.74 -51.93 -0.25 0.95 16 46 H 0.15 1.73 7.51 -52.49 -0.39 1.34 16 47 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -30.93 376.46 -10.36 -41.29 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.63 Total: 2.28 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -3.97 Total: 3.31 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.48 Total: -57.73 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.93 -10.36 -41.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130205263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.769 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds