Wall clock time and date at job start Tue Mar 31 2020 22:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46901 * 109.47111 * 75.92476 * 3 2 1 5 5 C 1.46897 * 111.00200 * 66.04572 * 4 3 2 6 6 C 1.47201 * 109.46895 * 293.95304 * 5 4 3 7 7 N 2.88936 * 70.21127 * 107.15381 * 2 1 3 8 8 C 1.46898 * 110.99882 * 190.00220 * 4 3 2 9 9 C 1.50699 * 109.47439 * 169.99810 * 8 4 3 10 10 O 1.21285 * 119.99543 * 359.97438 * 9 8 4 11 11 N 1.34770 * 120.00198 * 179.97438 * 9 8 4 12 12 C 1.46502 * 120.00293 * 5.32594 * 11 9 8 13 13 C 1.50700 * 109.46880 * 265.21825 * 12 11 9 14 14 H 1.07999 * 120.00274 * 5.04470 * 13 12 11 15 15 C 1.37878 * 120.00004 * 184.76943 * 13 12 11 16 16 N 1.31512 * 120.00245 * 175.23342 * 15 13 12 17 17 Si 1.86803 * 119.99916 * 355.23650 * 15 13 12 18 18 H 1.48498 * 109.47327 * 94.91476 * 17 15 13 19 19 H 1.48498 * 109.46976 * 214.91871 * 17 15 13 20 20 H 1.48501 * 109.46848 * 334.91091 * 17 15 13 21 21 C 1.39925 * 119.99995 * 185.32422 * 11 9 8 22 22 C 1.38896 * 120.07023 * 65.36428 * 21 11 9 23 23 C 1.38096 * 119.92480 * 179.74387 * 22 21 11 24 24 C 1.38299 * 120.07199 * 0.53085 * 23 22 21 25 25 C 1.50701 * 119.92776 * 179.69943 * 24 23 22 26 26 C 1.38262 * 120.14496 * 359.72173 * 24 23 22 27 27 C 1.50699 * 119.96959 * 179.97438 * 26 24 23 28 28 C 1.38140 * 120.06476 * 0.02562 * 26 24 23 29 29 H 4.40892 * 5.52209 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.46923 * 315.92293 * 3 2 1 31 31 H 1.09000 * 109.46714 * 195.92270 * 3 2 1 32 32 H 1.08998 * 109.47103 * 53.95333 * 5 4 3 33 33 H 1.09001 * 109.46770 * 173.95673 * 5 4 3 34 34 H 1.08994 * 109.47597 * 49.99485 * 8 4 3 35 35 H 1.09003 * 109.47090 * 289.99693 * 8 4 3 36 36 H 1.08991 * 109.47533 * 145.21565 * 12 11 9 37 37 H 1.08997 * 109.47111 * 25.21285 * 12 11 9 38 38 H 0.97004 * 120.00360 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.03848 * 359.97438 * 22 21 11 40 40 H 1.08005 * 119.96229 * 180.25008 * 23 22 21 41 41 H 1.08998 * 109.47620 * 270.01903 * 25 24 23 42 42 H 1.09003 * 109.47305 * 30.02400 * 25 24 23 43 43 H 1.09007 * 109.46967 * 150.02085 * 25 24 23 44 44 H 1.08998 * 109.46799 * 270.02540 * 27 26 24 45 45 H 1.09006 * 109.46604 * 30.01974 * 27 26 24 46 46 H 1.08993 * 109.47160 * 150.02372 * 27 26 24 47 47 H 1.08002 * 120.02940 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1358 -0.3359 -1.3434 5 6 2.7859 0.7137 -2.3097 6 6 1.3237 0.7632 -2.4723 7 7 0.1957 0.8019 -2.5978 8 6 4.5847 -0.5776 -1.3302 9 6 5.0100 -1.1545 -2.6559 10 8 4.1869 -1.3460 -3.5258 11 7 6.3048 -1.4576 -2.8747 12 6 7.2793 -1.3367 -1.7875 13 6 7.9503 0.0106 -1.8620 14 1 7.6219 0.7380 -2.5896 15 6 8.9798 0.3168 -0.9974 16 7 9.6275 1.4545 -1.1229 17 14 9.4546 -0.8844 0.3521 18 1 10.5741 -1.7395 -0.1177 19 1 9.8802 -0.1304 1.5586 20 1 8.2869 -1.7380 0.6883 21 6 6.7184 -1.8879 -4.1403 22 6 6.6474 -1.0249 -5.2263 23 6 7.0614 -1.4509 -6.4730 24 6 7.5359 -2.7388 -6.6429 25 6 7.9805 -3.2025 -8.0062 26 6 7.6029 -3.6020 -5.5649 27 6 8.1201 -5.0047 -5.7547 28 6 7.1953 -3.1802 -4.3142 29 1 -1.0500 0.0002 -0.0001 30 1 3.0096 -0.7375 0.7149 31 1 3.0088 0.9891 0.2819 32 1 3.1438 1.6767 -1.9456 33 1 3.2510 0.4927 -3.2704 34 1 4.8288 -1.2799 -0.5333 35 1 5.1084 0.3629 -1.1585 36 1 8.0292 -2.1218 -1.8827 37 1 6.7690 -1.4359 -0.8295 38 1 10.3521 1.6697 -0.5149 39 1 6.2724 -0.0206 -5.0952 40 1 7.0102 -0.7791 -7.3171 41 1 7.1336 -3.6391 -8.5356 42 1 8.3638 -2.3532 -8.5717 43 1 8.7657 -3.9507 -7.8973 44 1 7.2907 -5.6674 -6.0016 45 1 8.8485 -5.0166 -6.5656 46 1 8.5952 -5.3444 -4.8344 47 1 7.2475 -3.8551 -3.4727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281266932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:02 Heat of formation + Delta-G solvation = 99.200682 kcal Electronic energy + Delta-G solvation = -29067.963926 eV Core-core repulsion = 25218.497819 eV Total energy + Delta-G solvation = -3849.466107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.27027 -38.97276 -37.71416 -35.72883 -35.37523 -33.12213 -32.84319 -32.26219 -31.56905 -29.01384 -28.27807 -28.12377 -27.12861 -25.64661 -23.57146 -22.73695 -21.61698 -20.84634 -18.78877 -18.18955 -17.79921 -17.15336 -16.80364 -16.26156 -15.75509 -15.60045 -15.12614 -14.85101 -14.65635 -14.40484 -14.09473 -14.01800 -13.68854 -13.45882 -13.03633 -12.96979 -12.80613 -12.69594 -12.65528 -12.52779 -12.40655 -12.36452 -12.13860 -11.81827 -11.78701 -11.49314 -11.42218 -11.23981 -10.96317 -10.86873 -10.68807 -10.36867 -10.33294 -9.98616 -9.77972 -9.40176 -8.82808 -8.58978 -8.49377 -8.34148 -7.63520 -6.32923 -4.35433 1.66236 1.77076 2.34331 2.80448 3.03080 3.04242 3.09084 3.15428 3.19368 3.23659 3.46164 4.00232 4.08096 4.16167 4.31755 4.43113 4.96760 4.98511 5.02745 5.11542 5.17528 5.27672 5.28530 5.30674 5.40235 5.49054 5.58399 5.60232 5.64194 5.69031 5.76493 5.78200 5.92801 5.96143 5.99132 6.01958 6.12672 6.33165 6.44321 6.46727 6.67724 6.70160 6.75685 6.90882 6.94575 7.09045 7.30491 7.52084 7.63541 7.77995 7.88262 8.23849 8.66134 8.74535 9.25533 10.79284 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007741 B = 0.004316 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3616.356849 B = 6485.506138 C = 9018.300289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.194 4.194 3 C 0.160 3.840 4 N -0.518 5.518 5 C 0.139 3.861 6 C 0.228 3.772 7 N -0.438 5.438 8 C 0.041 3.959 9 C 0.522 3.478 10 O -0.535 6.535 11 N -0.553 5.553 12 C 0.208 3.792 13 C -0.544 4.544 14 H 0.080 0.920 15 C 0.080 3.920 16 N -0.885 5.885 17 Si 0.868 3.132 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.263 1.263 21 C 0.175 3.825 22 C -0.102 4.102 23 C -0.107 4.107 24 C -0.102 4.102 25 C -0.111 4.111 26 C -0.082 4.082 27 C -0.112 4.112 28 C -0.122 4.122 29 H 0.213 0.787 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.267 0.733 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -6.578 -2.799 8.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.194 4.194 3 C 0.034 3.966 4 N -0.243 5.243 5 C 0.009 3.991 6 C -0.091 4.091 7 N -0.116 5.116 8 C -0.088 4.088 9 C 0.311 3.689 10 O -0.412 6.412 11 N -0.281 5.281 12 C 0.089 3.911 13 C -0.582 4.582 14 H 0.098 0.902 15 C -0.124 4.124 16 N -0.522 5.522 17 Si 0.694 3.306 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.187 1.187 21 C 0.084 3.916 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.103 4.103 25 C -0.168 4.168 26 C -0.083 4.083 27 C -0.169 4.169 28 C -0.142 4.142 29 H 0.230 0.770 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.845 -6.924 -3.464 10.334 hybrid contribution 1.229 0.295 1.279 1.798 sum -5.616 -6.630 -2.185 8.959 Atomic orbital electron populations 1.24806 0.95783 1.00868 0.98254 1.22724 0.94181 1.00550 1.01958 1.19117 0.85146 1.01692 0.90629 1.61455 1.14112 1.43191 1.05591 1.19783 0.83653 0.94790 1.00845 1.28685 0.94863 0.92828 0.92692 1.81050 1.12640 1.08595 1.09305 1.22038 0.86004 1.03492 0.97286 1.20278 0.81528 0.77818 0.89321 1.90660 1.50967 1.53124 1.46466 1.45572 1.08065 1.64239 1.10200 1.19977 0.87942 0.98721 0.84506 1.21267 1.17970 0.98670 1.20295 0.90185 1.24839 0.95211 0.95165 0.97202 1.69887 1.21747 1.23094 1.37497 0.86958 0.79757 0.81604 0.82268 1.19929 1.20716 1.18720 1.17411 0.97231 0.91816 0.85094 1.21133 0.99628 0.99123 0.92309 1.20792 0.99633 0.95399 0.96771 1.19629 1.01307 0.94122 0.95198 1.20790 1.00977 1.01448 0.93564 1.19465 1.00223 0.96031 0.92567 1.20807 1.00701 0.92972 1.02413 1.20970 1.01566 0.94717 0.96926 0.77019 0.87639 0.91310 0.90142 0.84689 0.86858 0.88769 0.94883 0.94353 0.92238 0.86183 0.86241 0.91656 0.91917 0.91498 0.91518 0.91351 0.91800 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 17.05 29.55 0.50 -1.84 16 2 C -0.19 -2.59 10.94 -37.12 -0.41 -2.99 16 3 C 0.16 1.85 5.46 -6.61 -0.04 1.81 16 4 N -0.52 -7.07 4.31 -243.11 -1.05 -8.12 16 5 C 0.14 1.86 5.08 -6.61 -0.03 1.83 16 6 C 0.23 3.46 12.64 -20.77 -0.26 3.20 16 7 N -0.44 -7.30 16.65 42.14 0.70 -6.60 16 8 C 0.04 0.59 4.07 -4.98 -0.02 0.57 16 9 C 0.52 9.18 7.14 -10.99 -0.08 9.10 16 10 O -0.53 -10.50 14.08 5.55 0.08 -10.42 16 11 N -0.55 -10.35 2.52 -114.74 -0.29 -10.64 16 12 C 0.21 4.13 4.02 -5.19 -0.02 4.11 16 13 C -0.54 -12.96 9.91 -34.44 -0.34 -13.31 16 14 H 0.08 2.14 8.06 -52.49 -0.42 1.71 16 15 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.89 -24.11 13.96 55.43 0.77 -23.33 16 17 Si 0.87 18.27 27.48 -169.99 -4.67 13.60 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.26 -5.05 6.53 56.52 0.37 -4.68 16 21 C 0.18 3.28 4.83 -83.69 -0.40 2.87 16 22 C -0.10 -1.84 9.43 -39.39 -0.37 -2.21 16 23 C -0.11 -1.66 9.69 -39.61 -0.38 -2.05 16 24 C -0.10 -1.47 5.88 -104.59 -0.62 -2.09 16 25 C -0.11 -1.19 9.60 36.01 0.35 -0.84 16 26 C -0.08 -1.22 5.88 -104.65 -0.62 -1.83 16 27 C -0.11 -1.26 9.60 36.01 0.35 -0.91 16 28 C -0.12 -2.06 9.25 -39.39 -0.36 -2.42 16 29 H 0.21 2.27 7.80 -54.09 -0.42 1.85 16 30 H 0.11 1.03 7.93 -51.93 -0.41 0.62 16 31 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.14 1.98 5.79 -51.93 -0.30 1.68 16 34 H 0.11 1.42 7.03 -51.93 -0.36 1.05 16 35 H 0.09 1.32 8.12 -51.93 -0.42 0.90 16 36 H 0.03 0.67 7.15 -51.93 -0.37 0.29 16 37 H 0.04 0.70 5.46 -51.93 -0.28 0.41 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 43 H 0.07 0.63 5.94 -51.93 -0.31 0.33 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.66 5.94 -51.93 -0.31 0.35 16 46 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 47 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 395.95 15.07 5.97 5.97 Total: -1.00 -30.75 395.95 -7.92 -38.67 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.57 Total: 5.97 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.86 Total: -5.10 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.14 Total: -48.68 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -4.67 Total: 13.60 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.75 -7.92 -38.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281266932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.873 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds