Wall clock time and date at job start Tue Mar 31 2020 22:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46901 * 109.47111 * 75.92476 * 3 2 1 5 5 C 1.46897 * 111.00200 * 66.04572 * 4 3 2 6 6 C 1.47201 * 109.46895 * 293.95304 * 5 4 3 7 7 N 2.88936 * 70.21127 * 107.15381 * 2 1 3 8 8 C 1.46898 * 110.99882 * 190.00220 * 4 3 2 9 9 C 1.50699 * 109.47439 * 169.99810 * 8 4 3 10 10 O 1.21285 * 119.99543 * 359.97438 * 9 8 4 11 11 N 1.34770 * 120.00198 * 179.97438 * 9 8 4 12 12 C 1.46502 * 120.00293 * 5.32594 * 11 9 8 13 13 C 1.50700 * 109.46880 * 265.21825 * 12 11 9 14 14 H 1.07999 * 120.00274 * 5.04470 * 13 12 11 15 15 C 1.37878 * 120.00004 * 184.76943 * 13 12 11 16 16 N 1.31512 * 120.00245 * 175.23342 * 15 13 12 17 17 Si 1.86803 * 119.99916 * 355.23650 * 15 13 12 18 18 H 1.48498 * 109.47327 * 94.91476 * 17 15 13 19 19 H 1.48498 * 109.46976 * 214.91871 * 17 15 13 20 20 H 1.48501 * 109.46848 * 334.91091 * 17 15 13 21 21 C 1.39925 * 119.99995 * 185.32422 * 11 9 8 22 22 C 1.38896 * 120.07023 * 65.36428 * 21 11 9 23 23 C 1.38096 * 119.92480 * 179.74387 * 22 21 11 24 24 C 1.38299 * 120.07199 * 0.53085 * 23 22 21 25 25 C 1.50701 * 119.92776 * 179.69943 * 24 23 22 26 26 C 1.38262 * 120.14496 * 359.72173 * 24 23 22 27 27 C 1.50699 * 119.96959 * 179.97438 * 26 24 23 28 28 C 1.38140 * 120.06476 * 0.02562 * 26 24 23 29 29 H 4.40892 * 5.52209 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.46923 * 315.92293 * 3 2 1 31 31 H 1.09000 * 109.46714 * 195.92270 * 3 2 1 32 32 H 1.08998 * 109.47103 * 53.95333 * 5 4 3 33 33 H 1.09001 * 109.46770 * 173.95673 * 5 4 3 34 34 H 1.08994 * 109.47597 * 49.99485 * 8 4 3 35 35 H 1.09003 * 109.47090 * 289.99693 * 8 4 3 36 36 H 1.08991 * 109.47533 * 145.21565 * 12 11 9 37 37 H 1.08997 * 109.47111 * 25.21285 * 12 11 9 38 38 H 0.97004 * 120.00360 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.03848 * 359.97438 * 22 21 11 40 40 H 1.08005 * 119.96229 * 180.25008 * 23 22 21 41 41 H 1.08998 * 109.47620 * 270.01903 * 25 24 23 42 42 H 1.09003 * 109.47305 * 30.02400 * 25 24 23 43 43 H 1.09007 * 109.46967 * 150.02085 * 25 24 23 44 44 H 1.08998 * 109.46799 * 270.02540 * 27 26 24 45 45 H 1.09006 * 109.46604 * 30.01974 * 27 26 24 46 46 H 1.08993 * 109.47160 * 150.02372 * 27 26 24 47 47 H 1.08002 * 120.02940 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1358 -0.3359 -1.3434 5 6 2.7859 0.7137 -2.3097 6 6 1.3237 0.7632 -2.4723 7 7 0.1957 0.8019 -2.5978 8 6 4.5847 -0.5776 -1.3302 9 6 5.0100 -1.1545 -2.6559 10 8 4.1869 -1.3460 -3.5258 11 7 6.3048 -1.4576 -2.8747 12 6 7.2793 -1.3367 -1.7875 13 6 7.9503 0.0106 -1.8620 14 1 7.6219 0.7380 -2.5896 15 6 8.9798 0.3168 -0.9974 16 7 9.6275 1.4545 -1.1229 17 14 9.4546 -0.8844 0.3521 18 1 10.5741 -1.7395 -0.1177 19 1 9.8802 -0.1304 1.5586 20 1 8.2869 -1.7380 0.6883 21 6 6.7184 -1.8879 -4.1403 22 6 6.6474 -1.0249 -5.2263 23 6 7.0614 -1.4509 -6.4730 24 6 7.5359 -2.7388 -6.6429 25 6 7.9805 -3.2025 -8.0062 26 6 7.6029 -3.6020 -5.5649 27 6 8.1201 -5.0047 -5.7547 28 6 7.1953 -3.1802 -4.3142 29 1 -1.0500 0.0002 -0.0001 30 1 3.0096 -0.7375 0.7149 31 1 3.0088 0.9891 0.2819 32 1 3.1438 1.6767 -1.9456 33 1 3.2510 0.4927 -3.2704 34 1 4.8288 -1.2799 -0.5333 35 1 5.1084 0.3629 -1.1585 36 1 8.0292 -2.1218 -1.8827 37 1 6.7690 -1.4359 -0.8295 38 1 10.3521 1.6697 -0.5149 39 1 6.2724 -0.0206 -5.0952 40 1 7.0102 -0.7791 -7.3171 41 1 7.1336 -3.6391 -8.5356 42 1 8.3638 -2.3532 -8.5717 43 1 8.7657 -3.9507 -7.8973 44 1 7.2907 -5.6674 -6.0016 45 1 8.8485 -5.0166 -6.5656 46 1 8.5952 -5.3444 -4.8344 47 1 7.2475 -3.8551 -3.4727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281266932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:01 Heat of formation + Delta-G solvation = 82.099347 kcal Electronic energy + Delta-G solvation = -29068.705496 eV Core-core repulsion = 25218.497819 eV Total energy + Delta-G solvation = -3850.207677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58289 -40.13549 -38.89011 -37.02469 -36.73052 -34.70208 -33.97304 -33.54381 -32.75140 -30.16261 -29.85777 -29.20198 -28.18358 -26.77248 -24.79151 -24.27021 -22.86215 -22.05635 -20.01062 -19.34684 -19.01537 -18.81559 -18.08967 -17.64349 -16.86831 -16.83251 -16.31386 -16.20539 -15.87777 -15.72139 -15.37127 -15.00329 -14.84572 -14.68957 -14.49286 -14.10214 -14.05060 -13.93217 -13.75924 -13.69021 -13.54299 -13.50943 -13.46224 -13.01863 -12.89897 -12.72889 -12.68125 -12.51615 -12.44473 -12.10264 -11.92798 -11.79200 -11.62162 -11.34530 -11.03637 -10.78318 -10.66309 -9.96183 -9.58939 -9.52935 -8.96632 -8.23526 -6.30325 0.41655 0.52222 1.24619 1.45857 1.48260 1.56732 1.68815 1.73334 1.90971 2.07836 2.21507 2.40494 2.81413 2.87670 3.11319 3.23765 3.48586 3.74242 3.96724 4.02435 4.14347 4.14996 4.33178 4.35899 4.41091 4.45491 4.48798 4.54017 4.62240 4.65353 4.78496 4.80360 4.84072 4.88516 4.91583 5.02111 5.03430 5.07831 5.21533 5.31398 5.46353 5.50774 5.56492 5.65035 5.76850 5.77432 5.86953 6.18267 6.28764 6.57668 6.59440 6.65620 6.75580 7.27619 7.38436 8.92223 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007741 B = 0.004316 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3616.356849 B = 6485.506138 C = 9018.300289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.209 4.209 3 C 0.158 3.842 4 N -0.530 5.530 5 C 0.140 3.860 6 C 0.239 3.761 7 N -0.467 5.467 8 C 0.051 3.949 9 C 0.517 3.483 10 O -0.561 6.561 11 N -0.557 5.557 12 C 0.216 3.784 13 C -0.534 4.534 14 H 0.035 0.965 15 C 0.024 3.976 16 N -0.941 5.941 17 Si 0.932 3.068 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.224 1.224 21 C 0.142 3.858 22 C -0.132 4.132 23 C -0.115 4.115 24 C -0.105 4.105 25 C -0.109 4.109 26 C -0.085 4.085 27 C -0.110 4.110 28 C -0.138 4.138 29 H 0.226 0.774 30 H 0.128 0.872 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.267 0.733 39 H 0.101 0.899 40 H 0.138 0.862 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -9.094 -2.152 10.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.210 4.210 3 C 0.033 3.967 4 N -0.255 5.255 5 C 0.010 3.990 6 C -0.079 4.079 7 N -0.145 5.145 8 C -0.079 4.079 9 C 0.307 3.693 10 O -0.439 6.439 11 N -0.284 5.284 12 C 0.095 3.905 13 C -0.573 4.573 14 H 0.053 0.947 15 C -0.175 4.175 16 N -0.580 5.580 17 Si 0.755 3.245 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.146 1.146 21 C 0.051 3.949 22 C -0.151 4.151 23 C -0.133 4.133 24 C -0.105 4.105 25 C -0.165 4.165 26 C -0.086 4.086 27 C -0.166 4.166 28 C -0.157 4.157 29 H 0.243 0.757 30 H 0.146 0.854 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.137 0.863 34 H 0.156 0.844 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.156 0.844 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.450 -9.458 -2.824 11.791 hybrid contribution 1.073 1.110 0.905 1.790 sum -5.376 -8.348 -1.919 10.113 Atomic orbital electron populations 1.25356 0.96638 1.01059 0.98042 1.23250 0.95048 1.00522 1.02138 1.19328 0.84124 1.03609 0.89688 1.61378 1.13700 1.43651 1.06794 1.19832 0.82395 0.96255 1.00490 1.29002 0.95152 0.91924 0.91808 1.81048 1.13544 1.09665 1.10287 1.22000 0.86336 1.03794 0.95728 1.20915 0.80909 0.77146 0.90348 1.90639 1.51447 1.54142 1.47712 1.45590 1.08231 1.64496 1.10102 1.19841 0.88402 0.96063 0.86173 1.21398 1.17766 0.99600 1.18523 0.94698 1.25697 0.95157 0.96839 0.99836 1.70054 1.22998 1.25809 1.39149 0.85932 0.80531 0.79447 0.78596 1.20288 1.21171 1.14587 1.17753 0.98866 0.92966 0.85272 1.21193 1.01481 0.98658 0.93791 1.21099 0.99195 0.96654 0.96370 1.20116 0.99894 0.93362 0.97104 1.20864 1.02000 1.02343 0.91290 1.19966 0.98920 0.97883 0.91804 1.20882 1.01573 0.90613 1.03551 1.21205 1.01973 0.94196 0.98354 0.75726 0.85416 0.89236 0.87415 0.86332 0.84390 0.88610 0.94572 0.91371 0.92426 0.88095 0.84380 0.90200 0.90990 0.89752 0.90095 0.89427 0.91197 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.88 17.05 74.32 1.27 -3.61 16 2 C -0.21 -5.28 10.94 31.13 0.34 -4.94 16 3 C 0.16 3.26 5.46 84.50 0.46 3.72 16 4 N -0.53 -13.68 4.31 -923.06 -3.98 -17.66 16 5 C 0.14 3.69 5.08 84.50 0.43 4.12 16 6 C 0.24 7.21 12.64 89.45 1.13 8.34 16 7 N -0.47 -15.56 16.65 20.00 0.33 -15.23 16 8 C 0.05 1.36 4.07 85.56 0.35 1.71 16 9 C 0.52 18.17 7.14 87.66 0.63 18.80 16 10 O -0.56 -22.47 14.08 -3.05 -0.04 -22.52 16 11 N -0.56 -20.90 2.52 -635.33 -1.60 -22.51 16 12 C 0.22 8.30 4.02 85.63 0.34 8.64 16 13 C -0.53 -25.86 9.91 25.60 0.25 -25.60 16 14 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 15 C 0.02 1.20 5.47 84.66 0.46 1.66 16 16 N -0.94 -52.72 13.96 21.45 0.30 -52.42 16 17 Si 0.93 36.46 27.48 68.60 1.89 38.34 16 18 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.29 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.22 -7.28 6.53 99.48 0.65 -6.63 16 21 C 0.14 5.42 4.83 38.15 0.18 5.60 16 22 C -0.13 -4.96 9.43 22.39 0.21 -4.75 16 23 C -0.11 -3.58 9.69 22.25 0.22 -3.37 16 24 C -0.10 -2.85 5.88 -19.84 -0.12 -2.97 16 25 C -0.11 -2.00 9.60 71.24 0.68 -1.32 16 26 C -0.09 -2.38 5.88 -19.88 -0.12 -2.50 16 27 C -0.11 -2.12 9.60 71.24 0.68 -1.44 16 28 C -0.14 -4.57 9.25 22.39 0.21 -4.37 16 29 H 0.23 4.68 7.80 -4.42 -0.03 4.65 16 30 H 0.13 2.07 7.93 -2.39 -0.02 2.05 16 31 H 0.09 1.50 8.06 -2.39 -0.02 1.48 16 32 H 0.11 2.22 8.06 -2.39 -0.02 2.20 16 33 H 0.12 3.59 5.79 -2.39 -0.01 3.58 16 34 H 0.14 2.99 7.03 -2.39 -0.02 2.97 16 35 H 0.10 2.56 8.12 -2.39 -0.02 2.54 16 36 H 0.04 1.39 7.15 -2.39 -0.02 1.37 16 37 H 0.07 2.24 5.46 -2.39 -0.01 2.22 16 38 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.10 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 43 H 0.08 1.27 5.94 -2.38 -0.01 1.26 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.09 1.35 5.94 -2.38 -0.01 1.34 16 46 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 47 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -69.85 395.95 5.43 -64.41 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.92 Total: 29.85 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 7.62 Total: -2.27 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -4.95 Total: -107.81 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.04 Total: -22.52 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 1.89 Total: 38.34 kcal Total: -69.85 5.43 -64.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281266932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.512 kcal (2) G-P(sol) polarization free energy of solvation -69.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds