Wall clock time and date at job start Tue Mar 31 2020 22:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38255 * 120.00210 * 2 1 4 4 C 1.38212 * 120.00104 * 180.27974 * 3 2 1 5 5 C 1.38252 * 120.00294 * 359.74177 * 4 3 2 6 6 C 1.38212 * 120.00016 * 359.97438 * 5 4 3 7 7 C 1.38223 * 120.00452 * 179.74858 * 2 1 3 8 8 C 1.50699 * 119.99549 * 359.97438 * 7 2 1 9 9 N 1.46901 * 109.47503 * 75.15857 * 8 7 2 10 10 C 1.46896 * 111.00348 * 199.61883 * 9 8 7 11 11 C 1.50698 * 109.47418 * 169.99633 * 10 9 8 12 12 O 1.21294 * 119.99625 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00232 * 179.97438 * 11 10 9 14 14 C 1.37105 * 119.99828 * 180.02562 * 13 11 10 15 15 H 1.07989 * 120.00115 * 359.97438 * 14 13 11 16 16 C 1.38949 * 119.99712 * 180.02562 * 14 13 11 17 17 N 1.31413 * 120.00016 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00007 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46865 * 90.00546 * 18 16 14 20 20 H 1.48499 * 109.47421 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00518 * 18 16 14 22 22 C 1.46893 * 110.99914 * 75.66109 * 9 8 7 23 23 C 1.50703 * 109.47233 * 68.41643 * 22 9 8 24 24 C 1.38227 * 119.61505 * 95.40537 * 23 22 9 25 25 C 1.38631 * 119.16080 * 180.02562 * 24 23 22 26 26 C 1.38672 * 118.41692 * 0.02562 * 25 24 23 27 27 C 1.38176 * 119.16745 * 0.27693 * 26 25 24 28 28 N 1.31847 * 119.62135 * 275.43250 * 23 22 9 29 29 H 1.08998 * 109.47189 * 270.24899 * 1 2 3 30 30 H 1.08994 * 109.47284 * 30.25524 * 1 2 3 31 31 H 1.09007 * 109.46959 * 150.25715 * 1 2 3 32 32 H 1.07999 * 119.99818 * 0.04482 * 3 2 1 33 33 H 1.08010 * 119.99674 * 179.77056 * 4 3 2 34 34 H 1.08004 * 120.00531 * 180.02562 * 5 4 3 35 35 H 1.07996 * 120.00492 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47222 * 315.15926 * 8 7 2 37 37 H 1.09004 * 109.47208 * 195.16195 * 8 7 2 38 38 H 1.08999 * 109.47267 * 289.99928 * 10 9 8 39 39 H 1.08999 * 109.46957 * 49.99762 * 10 9 8 40 40 H 0.96998 * 119.99876 * 0.02562 * 13 11 10 41 41 H 0.97000 * 119.99797 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.47484 * 308.41845 * 22 9 8 43 43 H 1.09003 * 109.47141 * 188.41867 * 22 9 8 44 44 H 1.07998 * 120.42177 * 0.04652 * 24 23 22 45 45 H 1.07996 * 120.79078 * 180.02562 * 25 24 23 46 46 H 1.08005 * 120.41370 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.61803 * 179.70556 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 0.0000 -0.0063 6 6 3.5807 -1.1970 -0.0004 7 6 2.1982 -1.1970 0.0053 8 6 1.4447 -2.5021 0.0116 9 7 0.8920 -2.7550 -1.3258 10 6 -0.2047 -3.7305 -1.2665 11 6 -0.9042 -3.7817 -2.6003 12 8 -0.5259 -3.0754 -3.5109 13 7 -1.9493 -4.6131 -2.7816 14 6 -2.5853 -4.6600 -3.9953 15 1 -2.2491 -4.0306 -4.8058 16 6 -3.6632 -5.5167 -4.1821 17 7 -4.2732 -5.5614 -5.3452 18 14 -4.2452 -6.6050 -2.7798 19 1 -5.2744 -5.8842 -1.9883 20 1 -4.8300 -7.8534 -3.3319 21 1 -3.0942 -6.9424 -1.9045 22 6 1.9411 -3.1981 -2.2537 23 6 2.4190 -4.5701 -1.8535 24 6 1.8773 -5.6867 -2.4622 25 6 2.3236 -6.9443 -2.0864 26 6 3.3020 -7.0321 -1.1077 27 6 3.7920 -5.8719 -0.5393 28 7 3.3486 -4.6916 -0.9264 29 1 -0.3633 0.0045 1.0276 30 1 -0.3633 0.8876 -0.5178 31 1 -0.3633 -0.8923 -0.5099 32 1 1.6583 2.1326 0.0007 33 1 4.1204 2.1327 -0.0096 34 1 5.3517 0.0000 -0.0104 35 1 4.1206 -2.1323 -0.0011 36 1 0.6322 -2.4490 0.7363 37 1 2.1221 -3.3114 0.2838 38 1 0.1975 -4.7153 -1.0291 39 1 -0.9147 -3.4324 -0.4951 40 1 -2.2515 -5.1781 -2.0535 41 1 -5.0254 -6.1598 -5.4757 42 1 2.7760 -2.4982 -2.2193 43 1 1.5390 -3.2344 -3.2662 44 1 1.1164 -5.5807 -3.2212 45 1 1.9188 -7.8343 -2.5450 46 1 3.6733 -7.9955 -0.7907 47 1 4.5507 -5.9321 0.2270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567114756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:55 Heat of formation + Delta-G solvation = 43.457966 kcal Electronic energy + Delta-G solvation = -29740.832311 eV Core-core repulsion = 25888.949018 eV Total energy + Delta-G solvation = -3851.883293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.59331 -39.38511 -38.50702 -36.45584 -33.95115 -32.82129 -32.42651 -31.80736 -31.71045 -30.96239 -28.07421 -27.15202 -26.36854 -24.65737 -23.47258 -23.11309 -21.88809 -21.46734 -20.08817 -19.35010 -18.28038 -16.84943 -16.34671 -16.27515 -16.05620 -15.84948 -15.46575 -14.97623 -14.93249 -14.76834 -14.58392 -13.87584 -13.68565 -13.39585 -13.29094 -13.11287 -13.06401 -12.96730 -12.67448 -12.54828 -12.10543 -11.93047 -11.86921 -11.70861 -11.69129 -11.47078 -11.28498 -11.05954 -10.79821 -10.68862 -10.62447 -10.00311 -9.82180 -9.57391 -9.54051 -9.02020 -8.66430 -8.55689 -8.42284 -8.20644 -7.94445 -6.33783 -3.85132 1.09727 1.29516 1.48711 1.55980 2.98943 3.04099 3.12510 3.66514 3.72639 3.85105 4.07160 4.23248 4.33873 4.76911 4.81635 4.86901 4.94065 5.00600 5.08971 5.12253 5.17957 5.19438 5.22475 5.38928 5.51500 5.54288 5.57712 5.67389 5.71344 5.77927 5.82033 5.85007 5.90287 5.91828 5.93276 6.11250 6.18631 6.21695 6.25534 6.39717 6.48820 6.62687 6.65500 6.74589 6.87486 7.13118 7.19968 7.27234 7.55858 8.00033 8.12096 8.57478 8.92874 9.39922 9.80697 10.79251 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.003961 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.877762 B = 7067.757780 C = 8955.691699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.056 4.056 3 C -0.129 4.129 4 C -0.121 4.121 5 C -0.135 4.135 6 C -0.103 4.103 7 C -0.070 4.070 8 C 0.081 3.919 9 N -0.489 5.489 10 C 0.033 3.967 11 C 0.455 3.545 12 O -0.556 6.556 13 N -0.591 5.591 14 C -0.303 4.303 15 H 0.121 0.879 16 C 0.043 3.957 17 N -0.881 5.881 18 Si 0.876 3.124 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.270 1.270 22 C 0.098 3.902 23 C 0.097 3.903 24 C -0.153 4.153 25 C -0.076 4.076 26 C -0.178 4.178 27 C 0.089 3.911 28 N -0.476 5.476 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.369 0.631 41 H 0.273 0.727 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.141 0.859 45 H 0.133 0.867 46 H 0.130 0.870 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.813 2.172 14.418 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.057 4.057 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.153 4.153 6 C -0.121 4.121 7 C -0.071 4.071 8 C -0.046 4.046 9 N -0.210 5.210 10 C -0.098 4.098 11 C 0.241 3.759 12 O -0.438 6.438 13 N -0.231 5.231 14 C -0.432 4.432 15 H 0.138 0.862 16 C -0.160 4.160 17 N -0.521 5.521 18 Si 0.703 3.297 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.196 1.196 22 C -0.030 4.030 23 C -0.042 4.042 24 C -0.174 4.174 25 C -0.102 4.102 26 C -0.198 4.198 27 C -0.068 4.068 28 N -0.186 5.186 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.202 0.798 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.137 0.863 44 H 0.159 0.841 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 15.008 3.773 13.850 20.768 hybrid contribution -0.608 -2.658 0.948 2.887 sum 14.400 1.116 14.798 20.678 Atomic orbital electron populations 1.20901 0.91158 1.04350 1.01440 1.19790 0.96245 0.92319 0.97316 1.21001 0.94189 0.97450 1.02097 1.21055 0.94337 0.97770 1.00745 1.21038 0.99442 0.92641 1.02205 1.21178 0.93728 0.98254 0.98977 1.19566 0.93203 0.94081 1.00233 1.21220 0.98148 0.94626 0.90653 1.61994 1.08108 1.42948 1.07988 1.22059 0.94399 0.94988 0.98373 1.19548 0.83209 0.83901 0.89256 1.90534 1.66005 1.43847 1.43380 1.42221 1.29677 1.37644 1.13518 1.19417 1.11110 1.23090 0.89574 0.86174 1.25016 0.96576 0.97760 0.96659 1.69618 1.22015 1.38120 1.22309 0.86726 0.79521 0.81181 0.82285 1.19589 1.20225 1.19595 1.21539 0.94061 0.88271 0.99163 1.22404 0.91796 0.97968 0.92043 1.22296 1.00997 0.92913 1.01145 1.21651 0.95020 0.98103 0.95476 1.22089 0.98975 1.00072 0.98699 1.22720 0.98093 0.87875 0.98147 1.67613 1.10967 1.27288 1.12748 0.92086 0.91949 0.89252 0.86526 0.86711 0.86676 0.85557 0.90645 0.91774 0.93249 0.89269 0.79834 0.91626 0.89447 0.86298 0.84135 0.84907 0.85230 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.32 36.00 0.34 -1.23 16 2 C -0.06 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.13 -1.58 9.70 -39.58 -0.38 -1.97 16 4 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16 5 C -0.14 -1.57 10.05 -39.59 -0.40 -1.97 16 6 C -0.10 -1.31 9.00 -39.58 -0.36 -1.67 16 7 C -0.07 -0.95 4.82 -104.62 -0.50 -1.46 16 8 C 0.08 1.10 4.16 -4.98 -0.02 1.08 16 9 N -0.49 -7.74 3.34 -238.97 -0.80 -8.53 16 10 C 0.03 0.55 4.96 -4.98 -0.02 0.52 16 11 C 0.46 9.73 6.92 -10.99 -0.08 9.66 16 12 O -0.56 -13.90 13.88 5.55 0.08 -13.83 16 13 N -0.59 -13.42 5.09 -10.97 -0.06 -13.47 16 14 C -0.30 -8.23 10.16 -14.93 -0.15 -8.38 16 15 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 16 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 17 N -0.88 -25.17 13.96 55.50 0.77 -24.39 16 18 Si 0.88 18.91 27.74 -169.99 -4.71 14.20 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 22 C 0.10 1.59 5.22 -4.98 -0.03 1.56 16 23 C 0.10 1.44 4.70 -82.59 -0.39 1.05 16 24 C -0.15 -2.28 8.10 -39.44 -0.32 -2.60 16 25 C -0.08 -0.95 10.18 -39.28 -0.40 -1.35 16 26 C -0.18 -1.89 10.11 -39.44 -0.40 -2.29 16 27 C 0.09 0.99 11.18 -17.55 -0.20 0.80 16 28 N -0.48 -6.40 8.53 -9.47 -0.08 -6.49 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 31 H 0.09 1.31 6.13 -51.93 -0.32 1.00 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.11 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.13 1.57 8.00 -52.49 -0.42 1.15 16 36 H 0.08 0.95 7.15 -51.93 -0.37 0.58 16 37 H 0.06 0.88 5.53 -51.93 -0.29 0.59 16 38 H 0.05 0.78 5.84 -51.93 -0.30 0.48 16 39 H 0.09 1.30 7.83 -51.93 -0.41 0.90 16 40 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 42 H 0.09 1.40 6.91 -51.93 -0.36 1.04 16 43 H 0.12 2.26 5.87 -51.93 -0.30 1.96 16 44 H 0.14 2.38 7.51 -52.49 -0.39 1.98 16 45 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 46 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 47 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -30.97 380.08 -9.82 -40.80 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -6.34 Total: 16.32 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -4.42 Total: -10.34 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.16 Total: -52.88 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.97 -9.82 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567114756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.254 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds