Wall clock time and date at job start Tue Mar 31 2020 22:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38255 * 120.00210 * 2 1 4 4 C 1.38212 * 120.00104 * 180.27974 * 3 2 1 5 5 C 1.38252 * 120.00294 * 359.74177 * 4 3 2 6 6 C 1.38212 * 120.00016 * 359.97438 * 5 4 3 7 7 C 1.38223 * 120.00452 * 179.74858 * 2 1 3 8 8 C 1.50699 * 119.99549 * 359.97438 * 7 2 1 9 9 N 1.46901 * 109.47503 * 75.15857 * 8 7 2 10 10 C 1.46896 * 111.00348 * 199.61883 * 9 8 7 11 11 C 1.50698 * 109.47418 * 169.99633 * 10 9 8 12 12 O 1.21294 * 119.99625 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00232 * 179.97438 * 11 10 9 14 14 C 1.37105 * 119.99828 * 180.02562 * 13 11 10 15 15 H 1.07989 * 120.00115 * 359.97438 * 14 13 11 16 16 C 1.38949 * 119.99712 * 180.02562 * 14 13 11 17 17 N 1.31413 * 120.00016 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00007 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46865 * 90.00546 * 18 16 14 20 20 H 1.48499 * 109.47421 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00518 * 18 16 14 22 22 C 1.46893 * 110.99914 * 75.66109 * 9 8 7 23 23 C 1.50703 * 109.47233 * 68.41643 * 22 9 8 24 24 C 1.38227 * 119.61505 * 95.40537 * 23 22 9 25 25 C 1.38631 * 119.16080 * 180.02562 * 24 23 22 26 26 C 1.38672 * 118.41692 * 0.02562 * 25 24 23 27 27 C 1.38176 * 119.16745 * 0.27693 * 26 25 24 28 28 N 1.31847 * 119.62135 * 275.43250 * 23 22 9 29 29 H 1.08998 * 109.47189 * 270.24899 * 1 2 3 30 30 H 1.08994 * 109.47284 * 30.25524 * 1 2 3 31 31 H 1.09007 * 109.46959 * 150.25715 * 1 2 3 32 32 H 1.07999 * 119.99818 * 0.04482 * 3 2 1 33 33 H 1.08010 * 119.99674 * 179.77056 * 4 3 2 34 34 H 1.08004 * 120.00531 * 180.02562 * 5 4 3 35 35 H 1.07996 * 120.00492 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47222 * 315.15926 * 8 7 2 37 37 H 1.09004 * 109.47208 * 195.16195 * 8 7 2 38 38 H 1.08999 * 109.47267 * 289.99928 * 10 9 8 39 39 H 1.08999 * 109.46957 * 49.99762 * 10 9 8 40 40 H 0.96998 * 119.99876 * 0.02562 * 13 11 10 41 41 H 0.97000 * 119.99797 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.47484 * 308.41845 * 22 9 8 43 43 H 1.09003 * 109.47141 * 188.41867 * 22 9 8 44 44 H 1.07998 * 120.42177 * 0.04652 * 24 23 22 45 45 H 1.07996 * 120.79078 * 180.02562 * 25 24 23 46 46 H 1.08005 * 120.41370 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.61803 * 179.70556 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0058 5 6 4.2717 0.0000 -0.0063 6 6 3.5807 -1.1970 -0.0004 7 6 2.1982 -1.1970 0.0053 8 6 1.4447 -2.5021 0.0116 9 7 0.8920 -2.7550 -1.3258 10 6 -0.2047 -3.7305 -1.2665 11 6 -0.9042 -3.7817 -2.6003 12 8 -0.5259 -3.0754 -3.5109 13 7 -1.9493 -4.6131 -2.7816 14 6 -2.5853 -4.6600 -3.9953 15 1 -2.2491 -4.0306 -4.8058 16 6 -3.6632 -5.5167 -4.1821 17 7 -4.2732 -5.5614 -5.3452 18 14 -4.2452 -6.6050 -2.7798 19 1 -5.2744 -5.8842 -1.9883 20 1 -4.8300 -7.8534 -3.3319 21 1 -3.0942 -6.9424 -1.9045 22 6 1.9411 -3.1981 -2.2537 23 6 2.4190 -4.5701 -1.8535 24 6 1.8773 -5.6867 -2.4622 25 6 2.3236 -6.9443 -2.0864 26 6 3.3020 -7.0321 -1.1077 27 6 3.7920 -5.8719 -0.5393 28 7 3.3486 -4.6916 -0.9264 29 1 -0.3633 0.0045 1.0276 30 1 -0.3633 0.8876 -0.5178 31 1 -0.3633 -0.8923 -0.5099 32 1 1.6583 2.1326 0.0007 33 1 4.1204 2.1327 -0.0096 34 1 5.3517 0.0000 -0.0104 35 1 4.1206 -2.1323 -0.0011 36 1 0.6322 -2.4490 0.7363 37 1 2.1221 -3.3114 0.2838 38 1 0.1975 -4.7153 -1.0291 39 1 -0.9147 -3.4324 -0.4951 40 1 -2.2515 -5.1781 -2.0535 41 1 -5.0254 -6.1598 -5.4757 42 1 2.7760 -2.4982 -2.2193 43 1 1.5390 -3.2344 -3.2662 44 1 1.1164 -5.5807 -3.2212 45 1 1.9188 -7.8343 -2.5450 46 1 3.6733 -7.9955 -0.7907 47 1 4.5507 -5.9321 0.2270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567114756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:54 Heat of formation + Delta-G solvation = 24.523555 kcal Electronic energy + Delta-G solvation = -29741.653369 eV Core-core repulsion = 25888.949018 eV Total energy + Delta-G solvation = -3852.704350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.70458 -40.38475 -40.09466 -37.76087 -35.89752 -33.79487 -33.74227 -33.41347 -32.78932 -32.05817 -29.47195 -28.19853 -27.48290 -26.36866 -24.47121 -24.28856 -22.89594 -22.57303 -21.25352 -21.06997 -20.12736 -18.01621 -17.62081 -17.34243 -17.28542 -16.98726 -16.74307 -16.40747 -16.12287 -15.95208 -15.69740 -15.36357 -15.21062 -14.73220 -14.45070 -14.35055 -14.18853 -14.08942 -13.91056 -13.81647 -13.61084 -13.15390 -12.93850 -12.92289 -12.81023 -12.68478 -12.57287 -12.48401 -12.39985 -11.98707 -11.74247 -11.65154 -11.46910 -10.80538 -10.58937 -10.32748 -10.21398 -9.97529 -9.61362 -9.39010 -9.19345 -8.39303 -5.99107 0.10990 0.31950 0.53550 0.61636 1.28964 1.34452 1.42590 1.96637 2.22755 2.54022 2.83428 3.01253 3.16540 3.26679 3.39616 3.77434 3.93025 4.00783 4.06015 4.09854 4.16802 4.20970 4.23131 4.28425 4.35764 4.36038 4.43422 4.57924 4.59597 4.61580 4.75717 4.82217 4.87710 4.90728 4.96800 5.02499 5.13839 5.21163 5.28532 5.29029 5.49250 5.54248 5.67539 5.72200 5.77398 5.85382 5.90694 6.01679 6.11593 6.26797 6.61454 6.91009 7.00957 7.41756 7.98630 8.78232 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.003961 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.877762 B = 7067.757780 C = 8955.691699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.075 4.075 3 C -0.139 4.139 4 C -0.122 4.122 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.086 4.086 8 C 0.090 3.910 9 N -0.500 5.500 10 C 0.047 3.953 11 C 0.462 3.538 12 O -0.597 6.597 13 N -0.592 5.592 14 C -0.320 4.320 15 H 0.058 0.942 16 C -0.012 4.012 17 N -0.934 5.934 18 Si 0.958 3.042 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.234 1.234 22 C 0.108 3.892 23 C 0.088 3.912 24 C -0.176 4.176 25 C -0.080 4.080 26 C -0.162 4.162 27 C 0.090 3.910 28 N -0.484 5.484 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.386 0.614 41 H 0.278 0.722 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.148 0.852 46 H 0.169 0.831 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.507 0.662 18.604 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.075 4.075 3 C -0.157 4.157 4 C -0.140 4.140 5 C -0.157 4.157 6 C -0.129 4.129 7 C -0.087 4.087 8 C -0.037 4.037 9 N -0.222 5.222 10 C -0.084 4.084 11 C 0.249 3.751 12 O -0.481 6.481 13 N -0.234 5.234 14 C -0.449 4.449 15 H 0.076 0.924 16 C -0.210 4.210 17 N -0.575 5.575 18 Si 0.778 3.222 19 H -0.183 1.183 20 H -0.201 1.201 21 H -0.158 1.158 22 C -0.020 4.020 23 C -0.051 4.051 24 C -0.197 4.197 25 C -0.105 4.105 26 C -0.182 4.182 27 C -0.068 4.068 28 N -0.194 5.194 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.221 0.779 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.166 0.834 46 H 0.186 0.814 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 16.724 2.279 18.053 24.714 hybrid contribution -0.958 -2.097 -0.427 2.344 sum 15.766 0.182 17.626 23.649 Atomic orbital electron populations 1.20844 0.91122 1.03220 1.02239 1.19974 0.96553 0.92908 0.98103 1.21263 0.94901 0.97677 1.01877 1.21392 0.94189 0.98854 0.99596 1.21349 1.00687 0.92311 1.01357 1.21278 0.93519 0.98905 0.99171 1.19637 0.93712 0.94034 1.01282 1.21180 0.98468 0.94858 0.89191 1.61943 1.08103 1.42771 1.09405 1.21926 0.94875 0.96339 0.95238 1.20517 0.82035 0.81904 0.90613 1.90527 1.66836 1.45168 1.45531 1.42016 1.30116 1.38727 1.12516 1.18967 1.12510 1.23305 0.90134 0.92358 1.26002 0.95916 0.99049 1.00080 1.69799 1.22884 1.39479 1.25366 0.85464 0.80073 0.78245 0.78394 1.18309 1.20062 1.15766 1.21156 0.93786 0.89684 0.97410 1.21975 0.93026 0.96758 0.93311 1.22080 1.01566 0.94546 1.01500 1.21889 0.95397 0.97345 0.95910 1.22482 0.97197 1.01655 0.96871 1.23393 0.97993 0.87185 0.98193 1.67599 1.10556 1.28824 1.12420 0.90320 0.91969 0.91394 0.85082 0.84215 0.84494 0.85420 0.89512 0.91531 0.91700 0.86477 0.77894 0.91261 0.89796 0.90347 0.87589 0.83388 0.81392 0.79600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.32 71.23 0.66 -2.29 16 2 C -0.07 -1.96 5.88 -19.87 -0.12 -2.08 16 3 C -0.14 -3.22 9.70 22.27 0.22 -3.01 16 4 C -0.12 -2.54 10.05 22.27 0.22 -2.32 16 5 C -0.14 -2.97 10.05 22.27 0.22 -2.74 16 6 C -0.11 -2.68 9.00 22.27 0.20 -2.48 16 7 C -0.09 -2.27 4.82 -19.86 -0.10 -2.37 16 8 C 0.09 2.35 4.16 85.56 0.36 2.70 16 9 N -0.50 -16.03 3.34 -909.96 -3.04 -19.06 16 10 C 0.05 1.55 4.96 85.56 0.42 1.97 16 11 C 0.46 20.57 6.92 87.66 0.61 21.18 16 12 O -0.60 -32.20 13.88 -3.07 -0.04 -32.24 16 13 N -0.59 -27.52 5.09 -306.99 -1.56 -29.08 16 14 C -0.32 -18.39 10.16 84.04 0.85 -17.54 16 15 H 0.06 4.00 7.39 -2.92 -0.02 3.98 16 16 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 17 N -0.93 -55.85 13.96 21.66 0.30 -55.55 16 18 Si 0.96 38.51 27.74 68.60 1.90 40.42 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 20 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 22 C 0.11 3.68 5.22 85.56 0.45 4.13 16 23 C 0.09 2.60 4.70 42.55 0.20 2.80 16 24 C -0.18 -5.31 8.10 22.36 0.18 -5.13 16 25 C -0.08 -1.81 10.18 22.47 0.23 -1.59 16 26 C -0.16 -2.79 10.11 22.36 0.23 -2.57 16 27 C 0.09 1.67 11.18 84.67 0.95 2.61 16 28 N -0.48 -12.11 8.53 -183.89 -1.57 -13.68 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.51 8.09 -2.39 -0.02 1.49 16 31 H 0.07 1.99 6.13 -2.38 -0.01 1.98 16 32 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.13 3.00 8.00 -2.91 -0.02 2.97 16 36 H 0.09 2.04 7.15 -2.39 -0.02 2.02 16 37 H 0.07 1.72 5.53 -2.38 -0.01 1.70 16 38 H 0.07 1.97 5.84 -2.39 -0.01 1.96 16 39 H 0.12 3.20 7.83 -2.39 -0.02 3.18 16 40 H 0.39 15.16 5.76 -92.71 -0.53 14.62 16 41 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 42 H 0.08 2.82 6.91 -2.39 -0.02 2.81 16 43 H 0.08 3.29 5.87 -2.39 -0.01 3.27 16 44 H 0.11 3.89 7.51 -2.91 -0.02 3.87 16 45 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 46 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.19 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -74.31 380.08 2.65 -71.66 By element: Atomic # 1 Polarization: 46.03 SS G_CDS: 0.40 Total: 46.43 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 6.25 Total: -8.89 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -5.86 Total: -117.38 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.04 Total: -32.24 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.90 Total: 40.42 kcal Total: -74.31 2.65 -71.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567114756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.182 kcal (2) G-P(sol) polarization free energy of solvation -74.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds