Wall clock time and date at job start Tue Mar 31 2020 22:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35229 * 126.07045 * 2 1 4 4 C 1.40409 * 107.87057 * 179.97438 * 3 2 1 5 5 N 1.40155 * 125.97443 * 180.26317 * 4 3 2 6 6 C 1.34775 * 120.00331 * 359.71943 * 5 4 3 7 7 O 1.21288 * 119.99525 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00025 * 179.97438 * 6 5 4 9 9 H 1.08997 * 115.55064 * 34.28192 * 8 6 5 10 10 C 1.53002 * 117.49655 * 248.60722 * 8 6 5 11 11 C 1.53001 * 117.49390 * 179.97438 * 8 6 5 12 12 C 1.53001 * 117.50395 * 0.02562 * 11 8 6 13 13 C 1.50699 * 117.49871 * 214.97805 * 11 8 6 14 14 C 1.38238 * 119.99905 * 359.73223 * 13 11 8 15 15 C 1.38242 * 120.00039 * 179.78838 * 14 13 11 16 16 C 1.38231 * 119.99854 * 0.43804 * 15 14 13 17 17 C 1.38241 * 120.00222 * 359.81400 * 16 15 14 18 18 C 1.38233 * 120.00471 * 180.02562 * 13 11 8 19 19 N 1.31224 * 108.05071 * 0.02562 * 4 3 2 20 20 N 1.34974 * 126.06743 * 179.97438 * 2 1 3 21 21 C 1.46494 * 125.97468 * 0.05100 * 20 2 1 22 22 C 1.50693 * 109.47241 * 269.99989 * 21 20 2 23 23 H 1.08001 * 120.00363 * 0.02562 * 22 21 20 24 24 C 1.37885 * 120.00187 * 180.02562 * 22 21 20 25 25 N 1.31514 * 120.00029 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00001 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.46851 * 89.99511 * 26 24 22 28 28 H 1.48494 * 109.47484 * 210.00187 * 26 24 22 29 29 H 1.48499 * 109.46819 * 330.00329 * 26 24 22 30 30 H 1.08999 * 109.47145 * 270.03765 * 1 2 3 31 31 H 1.09004 * 109.47116 * 30.03740 * 1 2 3 32 32 H 1.09008 * 109.47564 * 150.03754 * 1 2 3 33 33 H 1.08000 * 126.06502 * 0.02562 * 3 2 1 34 34 H 0.97002 * 119.99613 * 179.71754 * 5 4 3 35 35 H 1.08997 * 117.50024 * 0.02562 * 10 8 6 36 36 H 1.09004 * 117.49533 * 145.00105 * 10 8 6 37 37 H 1.09004 * 109.46970 * 59.99508 * 12 11 8 38 38 H 1.08993 * 109.47268 * 179.97438 * 12 11 8 39 39 H 1.08998 * 109.46703 * 300.00149 * 12 11 8 40 40 H 1.08001 * 120.00239 * 359.97438 * 14 13 11 41 41 H 1.07997 * 119.99919 * 180.27486 * 15 14 13 42 42 H 1.07998 * 119.99920 * 179.83990 * 16 15 14 43 43 H 1.07999 * 120.00321 * 179.97438 * 17 16 15 44 44 H 1.08010 * 119.99653 * 359.97438 * 18 13 11 45 45 H 1.09001 * 109.47490 * 30.00198 * 21 20 2 46 46 H 1.09000 * 109.46909 * 150.00220 * 21 20 2 47 47 H 0.97000 * 119.99813 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6545 0.0006 5 7 4.7734 1.4749 0.0060 6 6 4.6367 2.8157 0.0055 7 8 3.5302 3.3123 0.0009 8 6 5.8586 3.6976 0.0119 9 1 6.7181 3.3141 -0.5377 10 6 6.1352 4.5123 1.2772 11 6 5.6370 5.2115 0.0105 12 6 4.1919 5.7141 0.0032 13 6 6.6240 6.0585 -0.7507 14 6 7.6835 5.4623 -1.4087 15 6 8.5865 6.2388 -2.1106 16 6 8.4351 7.6123 -2.1469 17 6 7.3786 8.2091 -1.4846 18 6 6.4735 7.4322 -0.7860 19 7 3.6336 -0.6577 0.0004 20 7 2.3016 -1.0910 0.0005 21 6 1.8499 -2.4846 0.0001 22 6 1.6940 -2.9626 1.4206 23 1 1.9094 -2.2950 2.2418 24 6 1.2764 -4.2524 1.6722 25 7 1.1399 -4.6693 2.9120 26 14 0.9045 -5.4075 0.2521 27 1 2.1382 -6.1444 -0.1226 28 1 -0.1447 -6.3748 0.6624 29 1 0.4247 -4.6212 -0.9128 30 1 -0.3633 0.0007 1.0277 31 1 -0.3633 0.8897 -0.5144 32 1 -0.3634 -0.8904 -0.5133 33 1 1.9719 2.1210 0.0004 34 1 5.6583 1.0776 0.0101 35 1 5.4336 4.4099 2.1051 36 1 7.1768 4.6646 1.5600 37 1 3.6755 5.3482 0.8907 38 1 4.1862 6.8040 0.0034 39 1 3.6844 5.3478 -0.8892 40 1 7.8042 4.3895 -1.3769 41 1 9.4117 5.7726 -2.6283 42 1 9.1420 8.2192 -2.6931 43 1 7.2605 9.2822 -1.5127 44 1 5.6481 7.8984 -0.2683 45 1 0.8917 -2.5559 -0.5145 46 1 2.5850 -3.1046 -0.5133 47 1 0.8457 -5.5765 3.0890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573535163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:59 Heat of formation + Delta-G solvation = 99.351436 kcal Electronic energy + Delta-G solvation = -27994.524632 eV Core-core repulsion = 24145.065062 eV Total energy + Delta-G solvation = -3849.459570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04317 -40.38704 -39.15371 -36.94090 -34.84923 -33.32622 -31.70236 -31.39563 -31.15134 -30.84974 -28.60583 -27.28977 -26.42648 -24.87047 -23.41803 -22.83171 -22.40555 -21.09070 -19.89687 -19.79617 -18.83923 -17.69505 -17.13538 -16.56897 -16.22872 -15.58778 -15.37979 -15.14338 -15.05680 -14.64243 -14.43865 -14.04316 -13.86317 -13.75944 -13.52077 -13.23202 -13.04980 -12.63527 -12.55973 -12.47350 -12.40926 -12.29516 -12.11737 -11.86304 -11.60243 -11.44406 -11.25958 -11.21129 -10.80882 -10.65414 -10.51206 -10.37494 -9.97428 -9.95981 -9.59262 -9.48453 -9.22494 -8.84813 -8.79522 -8.01407 -7.50331 -6.27557 -4.30683 1.00594 1.09859 2.17533 2.65891 2.78644 3.14493 3.20276 3.22521 3.29004 3.58295 3.69388 3.81650 4.20088 4.25283 4.29945 4.51749 4.56867 4.69101 4.74157 4.84476 4.93377 5.00904 5.13928 5.23225 5.33326 5.41256 5.56016 5.59802 5.62274 5.66630 5.73570 5.81647 5.83922 5.92886 6.02462 6.14464 6.18933 6.21499 6.30348 6.33718 6.39364 6.43867 6.53389 6.60589 6.68837 6.71744 7.27364 7.38325 7.57104 7.83726 8.23911 8.29963 8.55805 8.77690 9.27511 10.84911 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.001995 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.089137 B =14030.475511 C =14341.662938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.095 3.905 3 C -0.287 4.287 4 C 0.268 3.732 5 N -0.628 5.628 6 C 0.550 3.450 7 O -0.509 6.509 8 C -0.181 4.181 9 H 0.128 0.872 10 C -0.133 4.133 11 C -0.052 4.052 12 C -0.104 4.104 13 C -0.042 4.042 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.126 4.126 17 C -0.118 4.118 18 C -0.110 4.110 19 N -0.319 5.319 20 N -0.317 5.317 21 C 0.232 3.768 22 C -0.540 4.540 23 H 0.081 0.919 24 C 0.079 3.921 25 N -0.886 5.886 26 Si 0.874 3.126 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.264 1.264 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.161 0.839 34 H 0.411 0.589 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.050 0.950 46 H 0.045 0.955 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.619 23.419 -8.873 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C -0.318 4.318 4 C 0.016 3.984 5 N -0.275 5.275 6 C 0.336 3.664 7 O -0.382 6.382 8 C -0.202 4.202 9 H 0.146 0.854 10 C -0.170 4.170 11 C -0.053 4.053 12 C -0.161 4.161 13 C -0.042 4.042 14 C -0.138 4.138 15 C -0.135 4.135 16 C -0.144 4.144 17 C -0.136 4.136 18 C -0.128 4.128 19 N -0.149 5.149 20 N -0.099 5.099 21 C 0.112 3.888 22 C -0.579 4.579 23 H 0.099 0.901 24 C -0.126 4.126 25 N -0.523 5.523 26 Si 0.700 3.300 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.189 1.189 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.179 0.821 34 H 0.246 0.754 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.446 22.442 -8.758 26.671 hybrid contribution 0.060 -0.554 -0.582 0.806 sum 11.506 21.887 -9.340 26.432 Atomic orbital electron populations 1.20355 0.87789 1.02716 1.03468 1.21066 0.94922 0.87003 1.00644 1.21251 0.89663 0.99814 1.21057 1.18981 0.87317 0.89506 1.02638 1.42448 1.07512 1.05014 1.72513 1.19531 0.89915 0.81027 0.75968 1.90649 1.26534 1.73424 1.47636 1.22344 0.98834 0.93219 1.05809 0.85446 1.23260 1.03204 0.99852 0.90732 1.20206 0.96498 0.89483 0.99108 1.21420 0.91076 0.99267 1.04342 1.19039 0.94574 0.93339 0.97280 1.21095 0.94730 1.00087 0.97915 1.21132 0.99156 0.93995 0.99187 1.21166 0.98320 0.94984 0.99953 1.21151 0.94969 0.99850 0.97639 1.21022 0.99453 0.92941 0.99385 1.77265 0.99401 1.08681 1.29560 1.48511 1.01255 1.07019 1.53069 1.20001 0.95296 0.73733 0.99730 1.21167 1.47366 0.98978 0.90355 0.90132 1.24813 0.94477 0.97459 0.95811 1.69874 1.45666 1.18115 1.18646 0.86886 0.78981 0.81461 0.82647 1.19638 1.20527 1.18903 0.90067 0.90654 0.91114 0.82115 0.75428 0.87373 0.87484 0.90974 0.92903 0.90922 0.85906 0.86020 0.86192 0.86003 0.85596 0.93218 0.93671 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 10.11 36.00 0.36 -1.05 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -5.75 9.52 -39.84 -0.38 -6.13 16 4 C 0.27 5.34 8.11 -154.39 -1.25 4.09 16 5 N -0.63 -9.50 5.45 -11.13 -0.06 -9.56 16 6 C 0.55 7.59 7.56 -10.99 -0.08 7.51 16 7 O -0.51 -8.27 10.24 5.55 0.06 -8.21 16 8 C -0.18 -1.78 5.53 -91.77 -0.51 -2.28 16 9 H 0.13 0.97 6.08 -51.93 -0.32 0.66 16 10 C -0.13 -1.16 9.58 -26.72 -0.26 -1.41 16 11 C -0.05 -0.50 2.55 -155.65 -0.40 -0.90 16 12 C -0.10 -1.09 7.97 37.16 0.30 -0.80 16 13 C -0.04 -0.38 5.45 -104.62 -0.57 -0.95 16 14 C -0.12 -1.00 9.39 -39.58 -0.37 -1.37 16 15 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 16 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 17 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 18 C -0.11 -0.91 9.27 -39.58 -0.37 -1.28 16 19 N -0.32 -7.22 12.59 31.44 0.40 -6.83 16 20 N -0.32 -7.33 3.59 -58.34 -0.21 -7.54 16 21 C 0.23 5.57 5.06 -5.20 -0.03 5.54 16 22 C -0.54 -15.12 9.94 -34.44 -0.34 -15.46 16 23 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 24 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 25 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 26 Si 0.87 20.12 27.47 -169.99 -4.67 15.45 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 29 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.14 7.07 -51.92 -0.37 0.77 16 33 H 0.16 3.10 5.92 -52.49 -0.31 2.78 16 34 H 0.41 5.02 8.82 -40.82 -0.36 4.66 16 35 H 0.11 1.00 8.05 -51.93 -0.42 0.58 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.84 7.01 -51.93 -0.36 0.47 16 38 H 0.05 0.45 6.14 -51.93 -0.32 0.13 16 39 H 0.07 0.89 7.26 -51.93 -0.38 0.51 16 40 H 0.12 0.87 5.93 -52.49 -0.31 0.55 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.89 6.45 -52.48 -0.34 0.55 16 45 H 0.05 1.11 6.10 -51.93 -0.32 0.80 16 46 H 0.05 1.08 7.57 -51.93 -0.39 0.69 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -33.44 383.96 -9.99 -43.44 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.32 Total: 7.79 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -5.75 Total: -14.85 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.90 Total: -49.41 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.06 Total: -8.21 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.44 -9.99 -43.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573535163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.790 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds