Wall clock time and date at job start Tue Mar 31 2020 22:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35229 * 126.07045 * 2 1 4 4 C 1.40409 * 107.87057 * 179.97438 * 3 2 1 5 5 N 1.40155 * 125.97443 * 180.26317 * 4 3 2 6 6 C 1.34775 * 120.00331 * 359.71943 * 5 4 3 7 7 O 1.21288 * 119.99525 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00025 * 179.97438 * 6 5 4 9 9 H 1.08997 * 115.55064 * 34.28192 * 8 6 5 10 10 C 1.53002 * 117.49655 * 248.60722 * 8 6 5 11 11 C 1.53001 * 117.49390 * 179.97438 * 8 6 5 12 12 C 1.53001 * 117.50395 * 0.02562 * 11 8 6 13 13 C 1.50699 * 117.49871 * 214.97805 * 11 8 6 14 14 C 1.38238 * 119.99905 * 359.73223 * 13 11 8 15 15 C 1.38242 * 120.00039 * 179.78838 * 14 13 11 16 16 C 1.38231 * 119.99854 * 0.43804 * 15 14 13 17 17 C 1.38241 * 120.00222 * 359.81400 * 16 15 14 18 18 C 1.38233 * 120.00471 * 180.02562 * 13 11 8 19 19 N 1.31224 * 108.05071 * 0.02562 * 4 3 2 20 20 N 1.34974 * 126.06743 * 179.97438 * 2 1 3 21 21 C 1.46494 * 125.97468 * 0.05100 * 20 2 1 22 22 C 1.50693 * 109.47241 * 269.99989 * 21 20 2 23 23 H 1.08001 * 120.00363 * 0.02562 * 22 21 20 24 24 C 1.37885 * 120.00187 * 180.02562 * 22 21 20 25 25 N 1.31514 * 120.00029 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00001 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.46851 * 89.99511 * 26 24 22 28 28 H 1.48494 * 109.47484 * 210.00187 * 26 24 22 29 29 H 1.48499 * 109.46819 * 330.00329 * 26 24 22 30 30 H 1.08999 * 109.47145 * 270.03765 * 1 2 3 31 31 H 1.09004 * 109.47116 * 30.03740 * 1 2 3 32 32 H 1.09008 * 109.47564 * 150.03754 * 1 2 3 33 33 H 1.08000 * 126.06502 * 0.02562 * 3 2 1 34 34 H 0.97002 * 119.99613 * 179.71754 * 5 4 3 35 35 H 1.08997 * 117.50024 * 0.02562 * 10 8 6 36 36 H 1.09004 * 117.49533 * 145.00105 * 10 8 6 37 37 H 1.09004 * 109.46970 * 59.99508 * 12 11 8 38 38 H 1.08993 * 109.47268 * 179.97438 * 12 11 8 39 39 H 1.08998 * 109.46703 * 300.00149 * 12 11 8 40 40 H 1.08001 * 120.00239 * 359.97438 * 14 13 11 41 41 H 1.07997 * 119.99919 * 180.27486 * 15 14 13 42 42 H 1.07998 * 119.99920 * 179.83990 * 16 15 14 43 43 H 1.07999 * 120.00321 * 179.97438 * 17 16 15 44 44 H 1.08010 * 119.99653 * 359.97438 * 18 13 11 45 45 H 1.09001 * 109.47490 * 30.00198 * 21 20 2 46 46 H 1.09000 * 109.46909 * 150.00220 * 21 20 2 47 47 H 0.97000 * 119.99813 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6545 0.0006 5 7 4.7734 1.4749 0.0060 6 6 4.6367 2.8157 0.0055 7 8 3.5302 3.3123 0.0009 8 6 5.8586 3.6976 0.0119 9 1 6.7181 3.3141 -0.5377 10 6 6.1352 4.5123 1.2772 11 6 5.6370 5.2115 0.0105 12 6 4.1919 5.7141 0.0032 13 6 6.6240 6.0585 -0.7507 14 6 7.6835 5.4623 -1.4087 15 6 8.5865 6.2388 -2.1106 16 6 8.4351 7.6123 -2.1469 17 6 7.3786 8.2091 -1.4846 18 6 6.4735 7.4322 -0.7860 19 7 3.6336 -0.6577 0.0004 20 7 2.3016 -1.0910 0.0005 21 6 1.8499 -2.4846 0.0001 22 6 1.6940 -2.9626 1.4206 23 1 1.9094 -2.2950 2.2418 24 6 1.2764 -4.2524 1.6722 25 7 1.1399 -4.6693 2.9120 26 14 0.9045 -5.4075 0.2521 27 1 2.1382 -6.1444 -0.1226 28 1 -0.1447 -6.3748 0.6624 29 1 0.4247 -4.6212 -0.9128 30 1 -0.3633 0.0007 1.0277 31 1 -0.3633 0.8897 -0.5144 32 1 -0.3634 -0.8904 -0.5133 33 1 1.9719 2.1210 0.0004 34 1 5.6583 1.0776 0.0101 35 1 5.4336 4.4099 2.1051 36 1 7.1768 4.6646 1.5600 37 1 3.6755 5.3482 0.8907 38 1 4.1862 6.8040 0.0034 39 1 3.6844 5.3478 -0.8892 40 1 7.8042 4.3895 -1.3769 41 1 9.4117 5.7726 -2.6283 42 1 9.1420 8.2192 -2.6931 43 1 7.2605 9.2822 -1.5127 44 1 5.6481 7.8984 -0.2683 45 1 0.8917 -2.5559 -0.5145 46 1 2.5850 -3.1046 -0.5133 47 1 0.8457 -5.5765 3.0890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573535163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:58 Heat of formation + Delta-G solvation = 80.640712 kcal Electronic energy + Delta-G solvation = -27995.335990 eV Core-core repulsion = 24145.065062 eV Total energy + Delta-G solvation = -3850.270928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.40003 -41.47069 -40.03872 -37.78585 -36.26659 -35.24337 -33.28181 -32.82227 -32.04340 -31.48086 -29.51462 -28.99435 -27.90915 -26.04977 -24.29455 -24.02873 -23.35264 -22.25910 -21.28264 -20.86248 -20.02104 -19.24749 -18.47992 -17.66374 -17.50355 -17.05697 -16.61403 -16.22732 -15.95245 -15.79468 -15.59174 -15.34953 -14.91658 -14.79689 -14.57642 -14.37974 -14.19665 -13.99011 -13.87632 -13.72209 -13.62097 -13.28074 -13.19731 -13.16324 -12.88074 -12.80288 -12.57615 -12.27198 -12.02935 -11.84313 -11.83739 -11.56858 -11.45802 -11.31786 -11.10477 -10.90922 -10.66885 -9.77644 -9.61680 -9.46396 -9.12195 -8.41328 -6.52502 0.42777 0.54669 0.84123 1.26366 1.33824 1.36758 1.37858 1.46926 2.11134 2.25493 2.26432 2.66014 2.91062 3.05430 3.39450 3.52615 3.70293 3.82159 3.91547 3.98732 4.09431 4.17398 4.28805 4.35632 4.38520 4.50156 4.54688 4.67043 4.73498 4.77324 4.77851 4.81865 4.87198 4.95229 4.96503 4.98220 5.01917 5.09378 5.17786 5.21529 5.23092 5.24581 5.44516 5.65197 5.68237 5.73363 5.86382 5.98855 6.15198 6.24177 6.35650 6.50943 6.95205 7.10352 7.11336 8.75272 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027550 B = 0.001995 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.089137 B =14030.475511 C =14341.662938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.089 3.911 3 C -0.298 4.298 4 C 0.276 3.724 5 N -0.623 5.623 6 C 0.547 3.453 7 O -0.534 6.534 8 C -0.180 4.180 9 H 0.154 0.846 10 C -0.121 4.121 11 C -0.051 4.051 12 C -0.101 4.101 13 C -0.056 4.056 14 C -0.131 4.131 15 C -0.124 4.124 16 C -0.131 4.131 17 C -0.124 4.124 18 C -0.123 4.123 19 N -0.357 5.357 20 N -0.343 5.343 21 C 0.241 3.759 22 C -0.550 4.550 23 H 0.023 0.977 24 C 0.021 3.979 25 N -0.937 5.937 26 Si 0.952 3.048 27 H -0.266 1.266 28 H -0.274 1.274 29 H -0.234 1.234 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.168 0.832 34 H 0.424 0.576 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.132 0.868 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.544 24.487 -11.097 29.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.328 4.328 4 C 0.021 3.979 5 N -0.272 5.272 6 C 0.336 3.664 7 O -0.409 6.409 8 C -0.201 4.201 9 H 0.172 0.828 10 C -0.159 4.159 11 C -0.052 4.052 12 C -0.157 4.157 13 C -0.056 4.056 14 C -0.149 4.149 15 C -0.142 4.142 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.140 4.140 19 N -0.187 5.187 20 N -0.125 5.125 21 C 0.121 3.879 22 C -0.588 4.588 23 H 0.041 0.959 24 C -0.179 4.179 25 N -0.575 5.575 26 Si 0.773 3.227 27 H -0.191 1.191 28 H -0.199 1.199 29 H -0.157 1.157 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.185 0.815 34 H 0.262 0.738 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.149 0.851 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.396 23.553 -10.986 28.794 hybrid contribution -0.169 -0.683 0.198 0.731 sum 12.227 22.869 -10.788 28.087 Atomic orbital electron populations 1.20504 0.85188 1.04705 1.03800 1.21769 0.96719 0.86437 0.99211 1.21459 0.89936 1.00014 1.21438 1.19346 0.88902 0.89210 1.00420 1.42635 1.06921 1.05154 1.72492 1.20315 0.90969 0.80597 0.74550 1.90633 1.28076 1.73687 1.48482 1.22361 0.97653 0.92688 1.07399 0.82815 1.23345 1.04261 0.98311 0.89946 1.20184 0.96113 0.89096 0.99802 1.21327 0.91619 1.00352 1.02445 1.19046 0.94878 0.93586 0.98063 1.21279 0.94764 1.00804 0.98045 1.21419 0.99472 0.94319 0.99003 1.21495 0.98509 0.95246 0.99655 1.21431 0.94719 1.00880 0.97177 1.21197 1.00060 0.92935 0.99849 1.77174 0.99755 1.10097 1.31721 1.48434 1.01888 1.07081 1.55085 1.19785 0.96415 0.74640 0.97052 1.21234 1.47772 0.98694 0.91119 0.95890 1.25845 0.93729 0.99231 0.99088 1.70034 1.46879 1.18994 1.21590 0.85667 0.79051 0.78777 0.79235 1.19052 1.19881 1.15716 0.90409 0.87372 0.90410 0.81452 0.73844 0.88194 0.85214 0.92588 0.91179 0.93000 0.84944 0.84290 0.84209 0.84177 0.85054 0.90825 0.93397 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.70 10.11 71.23 0.72 -1.98 16 2 C 0.09 3.66 6.92 41.38 0.29 3.94 16 3 C -0.30 -12.02 9.52 22.10 0.21 -11.81 16 4 C 0.28 11.08 8.11 133.32 1.08 12.17 16 5 N -0.62 -18.70 5.45 -307.52 -1.68 -20.38 16 6 C 0.55 14.91 7.56 87.66 0.66 15.57 16 7 O -0.53 -17.48 10.24 -3.06 -0.03 -17.51 16 8 C -0.18 -3.29 5.53 -11.54 -0.06 -3.35 16 9 H 0.15 1.98 6.08 -2.39 -0.01 1.96 16 10 C -0.12 -1.92 9.58 30.60 0.29 -1.63 16 11 C -0.05 -0.92 2.55 -52.92 -0.14 -1.05 16 12 C -0.10 -2.10 7.97 71.98 0.57 -1.52 16 13 C -0.06 -0.91 5.45 -19.87 -0.11 -1.02 16 14 C -0.13 -1.90 9.39 22.27 0.21 -1.69 16 15 C -0.12 -1.57 10.05 22.27 0.22 -1.34 16 16 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 17 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 18 C -0.12 -1.83 9.27 22.27 0.21 -1.62 16 19 N -0.36 -16.49 12.59 -54.45 -0.69 -17.17 16 20 N -0.34 -16.06 3.59 -338.48 -1.22 -17.27 16 21 C 0.24 11.55 5.06 85.63 0.43 11.98 16 22 C -0.55 -31.74 9.94 25.60 0.25 -31.49 16 23 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 24 C 0.02 1.17 5.47 84.66 0.46 1.64 16 25 N -0.94 -57.12 13.96 21.45 0.30 -56.82 16 26 Si 0.95 40.91 27.47 68.60 1.88 42.79 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 H -0.23 -8.88 6.54 99.48 0.65 -8.23 16 30 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.08 2.38 7.07 -2.38 -0.02 2.36 16 33 H 0.17 6.48 5.92 -2.91 -0.02 6.46 16 34 H 0.42 10.12 8.82 -92.71 -0.82 9.30 16 35 H 0.10 1.78 8.05 -2.39 -0.02 1.76 16 36 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.33 7.01 -2.39 -0.02 1.31 16 38 H 0.07 1.17 6.14 -2.39 -0.01 1.15 16 39 H 0.05 1.29 7.26 -2.39 -0.02 1.27 16 40 H 0.13 1.54 5.93 -2.91 -0.02 1.52 16 41 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 43 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 44 H 0.13 1.69 6.45 -2.91 -0.02 1.67 16 45 H 0.07 3.15 6.10 -2.39 -0.01 3.14 16 46 H 0.05 2.25 7.57 -2.39 -0.02 2.24 16 47 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -75.88 383.96 4.47 -71.41 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.14 Total: 30.83 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 5.76 Total: -15.87 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -3.28 Total: -111.65 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.03 Total: -17.51 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.88 Total: 42.79 kcal Total: -75.88 4.47 -71.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573535163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.052 kcal (2) G-P(sol) polarization free energy of solvation -75.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds