Wall clock time and date at job start Tue Mar 31 2020 22:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36620 * 120.91919 * 2 1 4 4 C 1.39271 * 119.90379 * 180.02562 * 3 2 1 5 5 N 1.31140 * 121.77287 * 0.02562 * 4 3 2 6 6 C 1.33617 * 121.39486 * 359.97438 * 5 4 3 7 7 C 1.40769 * 120.83919 * 180.02562 * 6 5 4 8 8 C 1.35697 * 120.11108 * 179.97438 * 7 6 5 9 9 C 1.40630 * 120.92692 * 0.02562 * 8 7 6 10 10 C 1.47772 * 119.79982 * 179.97438 * 9 8 7 11 11 O 1.21566 * 120.00018 * 179.97438 * 10 9 8 12 12 N 1.34772 * 119.99847 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99679 * 180.02562 * 12 10 9 14 14 C 1.53042 * 109.45905 * 275.02383 * 13 12 10 15 15 C 1.53195 * 109.31635 * 178.60353 * 14 13 12 16 16 N 1.46929 * 108.76443 * 54.64912 * 15 14 13 17 17 C 1.36941 * 120.62810 * 126.40530 * 16 15 14 18 18 H 1.07994 * 119.99856 * 331.83153 * 17 16 15 19 19 C 1.38809 * 119.99962 * 151.82526 * 17 16 15 20 20 N 1.31620 * 120.00133 * 343.08068 * 19 17 16 21 21 Si 1.86800 * 119.99992 * 163.07633 * 19 17 16 22 22 H 1.48501 * 109.46955 * 90.00483 * 21 19 17 23 23 H 1.48506 * 109.47003 * 210.00361 * 21 19 17 24 24 H 1.48496 * 109.47082 * 330.00085 * 21 19 17 25 25 C 1.46920 * 118.74064 * 306.39082 * 16 15 14 26 26 C 1.53039 * 109.46243 * 154.97091 * 13 12 10 27 27 C 1.38542 * 120.39702 * 359.93070 * 9 8 7 28 28 C 1.40182 * 119.40280 * 0.08945 * 27 9 8 29 29 H 1.09005 * 109.46974 * 89.99985 * 1 2 3 30 30 H 1.09002 * 109.46979 * 209.99611 * 1 2 3 31 31 H 1.08998 * 109.47175 * 329.99966 * 1 2 3 32 32 H 1.07996 * 120.04463 * 0.02562 * 3 2 1 33 33 H 1.08005 * 119.11324 * 179.72214 * 4 3 2 34 34 H 1.07996 * 119.94059 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.53073 * 179.97438 * 8 7 6 36 36 H 0.96991 * 120.00265 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.46664 * 34.99461 * 13 12 10 38 38 H 1.09007 * 109.49868 * 298.56580 * 14 13 12 39 39 H 1.08993 * 109.50089 * 58.65951 * 14 13 12 40 40 H 1.08997 * 109.59228 * 294.86764 * 15 14 13 41 41 H 1.08994 * 109.70479 * 174.50660 * 15 14 13 42 42 H 0.96993 * 120.00452 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.59042 * 293.81676 * 25 16 15 44 44 H 1.09006 * 109.70493 * 173.46396 * 25 16 15 45 45 H 1.08997 * 109.49535 * 301.33441 * 26 13 12 46 46 H 1.09002 * 109.49823 * 61.42764 * 26 13 12 47 47 H 1.08004 * 120.30212 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1474 -0.0005 5 7 4.2721 0.0204 -0.0016 6 6 3.6480 -1.1610 -0.0016 7 6 4.3796 -2.3636 -0.0022 8 6 3.7305 -3.5553 -0.0017 9 6 2.3254 -3.6130 -0.0012 10 6 1.6442 -4.9244 -0.0012 11 8 0.4298 -4.9785 -0.0003 12 7 2.3694 -6.0604 -0.0013 13 6 1.6941 -7.3604 -0.0019 14 6 1.3463 -7.7550 1.4353 15 6 0.6095 -9.0981 1.4279 16 7 1.4316 -10.0843 0.7137 17 6 1.7574 -11.2776 1.3013 18 1 1.8310 -11.3478 2.3764 19 6 1.9930 -12.3970 0.5149 20 7 1.5904 -12.4177 -0.7380 21 14 2.8816 -13.8740 1.2349 22 1 1.8905 -14.8068 1.8288 23 1 3.6351 -14.5701 0.1611 24 1 3.8257 -13.4191 2.2870 25 6 1.8973 -9.7661 -0.6429 26 6 2.6195 -8.4155 -0.6123 27 6 1.5759 -2.4478 0.0003 28 6 2.2308 -1.2083 -0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6848 2.1163 0.0004 33 1 4.1436 2.0815 -0.0051 34 1 5.4592 -2.3378 -0.0021 35 1 4.3011 -4.4723 -0.0025 36 1 3.3384 -6.0172 -0.0016 37 1 0.7797 -7.2945 -0.5916 38 1 2.2622 -7.8456 2.0195 39 1 0.7063 -6.9916 1.8775 40 1 -0.3492 -8.9862 0.9215 41 1 0.4448 -9.4326 2.4521 42 1 1.7553 -13.1996 -1.2876 43 1 1.0437 -9.7088 -1.3183 44 1 2.5839 -10.5398 -0.9868 45 1 2.8857 -8.1221 -1.6277 46 1 3.5232 -8.4997 -0.0087 47 1 0.4969 -2.4939 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586776126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:02 Heat of formation + Delta-G solvation = 33.529403 kcal Electronic energy + Delta-G solvation = -28311.150569 eV Core-core repulsion = 24458.836742 eV Total energy + Delta-G solvation = -3852.313827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.32998 -39.81494 -37.61512 -36.78231 -35.09466 -34.48587 -32.32066 -31.09603 -30.69288 -30.08808 -29.34108 -28.23201 -25.54452 -24.41333 -23.93170 -22.36403 -22.05170 -21.34114 -20.74685 -19.51573 -18.39523 -18.05742 -16.95341 -16.81272 -16.07710 -15.75313 -15.15384 -14.84373 -14.67047 -14.58171 -14.42773 -14.15338 -13.89153 -13.73923 -13.56141 -13.46077 -13.18996 -13.00637 -12.86976 -12.68714 -12.39259 -12.06046 -11.90318 -11.74389 -11.48091 -11.14393 -10.88428 -10.71903 -10.56457 -10.52123 -10.30560 -10.06616 -9.97767 -9.86269 -9.74904 -9.52656 -9.18317 -8.78730 -8.53368 -8.46085 -6.69660 -5.80867 -3.23042 -0.10055 0.33210 1.56405 2.18504 3.20676 3.22849 3.36713 3.43630 3.45855 3.79708 3.89300 4.11218 4.22194 4.38068 4.48513 4.55200 4.67641 4.75374 4.84787 4.98497 5.08386 5.13001 5.29383 5.31807 5.38679 5.47773 5.54061 5.56461 5.59102 5.63917 5.69682 5.84863 5.91885 6.00219 6.06008 6.14644 6.23830 6.30160 6.41117 6.50913 6.53853 6.56555 6.78017 6.87041 6.97749 7.29620 7.53261 7.56001 7.66183 7.78606 8.28117 8.43348 9.19459 9.82633 10.39639 11.28145 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029244 B = 0.002050 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.215526 B =13656.632498 C =14179.162633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.011 4.011 3 C -0.188 4.188 4 C 0.143 3.857 5 N -0.483 5.483 6 C 0.145 3.855 7 C -0.099 4.099 8 C -0.074 4.074 9 C -0.130 4.130 10 C 0.554 3.446 11 O -0.538 6.538 12 N -0.716 5.716 13 C 0.151 3.849 14 C -0.139 4.139 15 C 0.147 3.853 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.174 3.826 26 C -0.147 4.147 27 C -0.029 4.029 28 C -0.113 4.113 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.160 0.840 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.395 0.605 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.056 0.944 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.092 0.908 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 27.371 -0.016 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.019 4.019 3 C -0.208 4.208 4 C -0.029 4.029 5 N -0.191 5.191 6 C 0.024 3.976 7 C -0.117 4.117 8 C -0.094 4.094 9 C -0.133 4.133 10 C 0.340 3.660 11 O -0.416 6.416 12 N -0.366 5.366 13 C 0.048 3.952 14 C -0.179 4.179 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.048 3.952 26 C -0.187 4.187 27 C -0.049 4.049 28 C -0.115 4.115 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.230 0.770 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.110 0.890 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.466 27.029 -0.133 27.250 hybrid contribution 0.129 -0.673 0.288 0.743 sum 3.595 26.356 0.155 26.600 Atomic orbital electron populations 1.20963 0.89653 1.04065 1.03588 1.20277 0.96877 0.91993 0.92741 1.21770 0.95622 0.98815 1.04566 1.22996 0.91533 0.96478 0.91931 1.68070 1.39901 0.97714 1.13462 1.18998 0.89560 0.92593 0.96485 1.20677 1.00610 0.89735 1.00696 1.21001 0.93115 0.98505 0.96769 1.20085 0.93772 0.93998 1.05410 1.18167 0.87097 0.83876 0.76847 1.90777 1.13332 1.87452 1.50038 1.46291 1.10094 1.06251 1.73981 1.21103 0.96487 0.80002 0.97651 1.22382 1.00925 0.99071 0.95560 1.20874 0.92474 0.87933 0.96669 1.44094 1.57238 1.15695 1.14521 1.19173 1.41440 0.85990 0.91541 0.91666 1.25059 1.00791 0.97242 0.96615 1.70020 1.47674 1.29529 1.07545 0.86304 0.79671 0.82730 0.78107 1.21383 1.21564 1.20504 1.20737 0.96759 0.91390 0.86324 1.22550 0.99091 0.97990 0.99080 1.21485 1.00847 0.89676 0.92892 1.18683 0.94105 0.93980 1.04719 0.89769 0.90231 0.90394 0.84364 0.82254 0.84086 0.84737 0.76979 0.89832 0.92263 0.92690 0.96160 0.92512 0.93592 0.96077 0.88981 0.92660 0.92105 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 9.59 36.00 0.35 -0.42 16 2 C -0.01 -0.09 5.92 -104.22 -0.62 -0.71 16 3 C -0.19 -1.29 9.72 -39.78 -0.39 -1.68 16 4 C 0.14 1.11 11.14 -17.46 -0.19 0.91 16 5 N -0.48 -5.15 10.33 -10.92 -0.11 -5.27 16 6 C 0.15 1.62 6.61 -84.77 -0.56 1.06 16 7 C -0.10 -0.98 9.95 -39.54 -0.39 -1.38 16 8 C -0.07 -0.73 9.44 -39.59 -0.37 -1.10 16 9 C -0.13 -1.56 5.87 -104.99 -0.62 -2.18 16 10 C 0.55 8.19 7.73 -12.36 -0.10 8.10 16 11 O -0.54 -9.79 15.97 5.31 0.08 -9.71 16 12 N -0.72 -10.01 5.03 -54.73 -0.28 -10.28 16 13 C 0.15 2.59 2.42 -67.89 -0.16 2.42 16 14 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16 15 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 16 N -0.59 -14.70 2.99 -172.32 -0.52 -15.22 16 17 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 18 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 20 N -0.90 -25.93 11.19 55.49 0.62 -25.31 16 21 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 26 C -0.15 -2.64 5.55 -26.61 -0.15 -2.79 16 27 C -0.03 -0.33 8.88 -38.74 -0.34 -0.68 16 28 C -0.11 -1.20 5.74 -106.82 -0.61 -1.82 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.52 6.51 -51.93 -0.34 0.18 16 31 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 32 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.01 6.35 -52.49 -0.33 0.68 16 36 H 0.40 4.39 6.59 -40.82 -0.27 4.12 16 37 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 38 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 2.38 6.07 -51.93 -0.31 2.06 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.15 1.61 6.00 -52.48 -0.31 1.29 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -32.96 379.43 -10.67 -43.63 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.57 Total: 2.81 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -4.59 Total: -2.79 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.28 Total: -56.07 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.96 -10.67 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586776126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.155 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds