Wall clock time and date at job start Tue Mar 31 2020 22:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35234 * 126.06814 * 2 1 4 4 C 1.40415 * 107.86352 * 180.24361 * 3 2 1 5 5 N 1.40156 * 125.97200 * 179.76129 * 4 3 2 6 6 C 1.34782 * 120.00071 * 0.02562 * 5 4 3 7 7 O 1.21287 * 120.00089 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99926 * 180.02562 * 6 5 4 9 9 C 1.53009 * 110.26909 * 302.07197 * 8 6 5 10 10 C 1.54350 * 110.30306 * 179.97438 * 8 6 5 11 11 C 1.54342 * 102.39220 * 214.72629 * 10 8 6 12 12 C 1.51375 * 105.17025 * 26.34645 * 11 10 8 13 13 C 1.38498 * 130.39063 * 162.80777 * 12 11 10 14 14 C 1.38104 * 120.21150 * 180.02562 * 13 12 11 15 15 C 1.38253 * 119.93983 * 0.02562 * 14 13 12 16 16 C 1.38104 * 119.93003 * 359.97438 * 15 14 13 17 17 C 1.38218 * 109.75786 * 342.81126 * 12 11 10 18 18 N 1.31217 * 108.05429 * 359.75716 * 4 3 2 19 19 N 1.34973 * 126.06518 * 179.82887 * 2 1 3 20 20 C 1.46491 * 125.97659 * 0.02562 * 19 2 1 21 21 C 1.50702 * 109.46957 * 269.71271 * 20 19 2 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48501 * 109.47188 * 90.00793 * 25 23 21 27 27 H 1.48501 * 109.47085 * 210.00372 * 25 23 21 28 28 H 1.48498 * 109.47634 * 330.00608 * 25 23 21 29 29 H 1.09003 * 109.47496 * 270.17449 * 1 2 3 30 30 H 1.09004 * 109.47405 * 30.17152 * 1 2 3 31 31 H 1.09002 * 109.47222 * 150.17058 * 1 2 3 32 32 H 1.07997 * 126.07244 * 0.02655 * 3 2 1 33 33 H 0.97003 * 119.99906 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.46865 * 59.29726 * 9 8 6 35 35 H 1.08998 * 109.46967 * 179.30240 * 9 8 6 36 36 H 1.08997 * 109.46671 * 299.30247 * 9 8 6 37 37 H 1.08992 * 110.82202 * 332.95257 * 10 8 6 38 38 H 1.08995 * 110.82088 * 96.50316 * 10 8 6 39 39 H 1.08999 * 110.30202 * 145.26928 * 11 10 8 40 40 H 1.08998 * 110.30955 * 267.32951 * 11 10 8 41 41 H 1.07995 * 119.89331 * 359.97438 * 13 12 11 42 42 H 1.08007 * 120.03152 * 180.02562 * 14 13 12 43 43 H 1.08001 * 120.03526 * 180.02562 * 15 14 13 44 44 H 1.08006 * 119.89329 * 180.02562 * 16 15 14 45 45 H 1.09004 * 109.47166 * 149.71537 * 20 19 2 46 46 H 1.08994 * 109.47507 * 29.71244 * 20 19 2 47 47 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 -0.0057 5 7 4.7735 1.4748 -0.0123 6 6 4.6367 2.8156 -0.0130 7 8 3.5303 3.3124 -0.0085 8 6 5.8586 3.6976 -0.0207 9 6 6.7411 3.3913 1.1911 10 6 5.4456 5.1848 -0.0208 11 6 6.5463 5.8342 -0.8862 12 6 7.0340 4.7307 -1.8004 13 6 7.7655 4.7957 -2.9747 14 6 8.1006 3.6383 -3.6496 15 6 7.7045 2.4105 -3.1527 16 6 6.9750 2.3437 -1.9820 17 6 6.6388 3.5031 -1.3031 18 7 3.6336 -0.6577 -0.0037 19 7 2.3016 -1.0910 0.0033 20 6 1.8499 -2.4846 0.0069 21 6 1.7013 -2.9607 1.4290 22 1 1.9209 -2.2920 2.2481 23 6 1.2790 -4.2482 1.6843 24 7 1.0112 -5.0624 0.6868 25 14 1.0874 -4.8360 3.4470 26 1 -0.2937 -4.5553 3.9151 27 1 1.3448 -6.2970 3.5124 28 1 2.0587 -4.1229 4.3150 29 1 -0.3634 0.0031 1.0277 30 1 -0.3634 0.8885 -0.5165 31 1 -0.3634 -0.8915 -0.5112 32 1 1.9720 2.1211 0.0004 33 1 5.6584 1.0775 -0.0163 34 1 7.0445 2.3447 1.1643 35 1 7.6261 4.0270 1.1661 36 1 6.1811 3.5838 2.1062 37 1 4.4653 5.3147 -0.4792 38 1 5.4584 5.5905 0.9908 39 1 6.1320 6.6550 -1.4717 40 1 7.3604 6.1928 -0.2564 41 1 8.0742 5.7545 -3.3641 42 1 8.6716 3.6924 -4.5648 43 1 7.9661 1.5044 -3.6791 44 1 6.6663 1.3842 -1.5942 45 1 2.5823 -3.1053 -0.5094 46 1 0.8891 -2.5565 -0.5026 47 1 0.7144 -5.9683 0.8665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592614898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:52 Heat of formation + Delta-G solvation = 62.338467 kcal Electronic energy + Delta-G solvation = -28948.803223 eV Core-core repulsion = 25097.738650 eV Total energy + Delta-G solvation = -3851.064573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36320 -40.42263 -38.87828 -36.16469 -34.90901 -33.46020 -32.38570 -31.30584 -30.76906 -30.04260 -28.93592 -26.76200 -26.34261 -25.65237 -23.49747 -22.94447 -22.31825 -21.26273 -20.25861 -19.75592 -18.83419 -17.05327 -16.69076 -16.31289 -16.25555 -15.70036 -15.37176 -15.20090 -14.89159 -14.76806 -14.27526 -14.08641 -13.81204 -13.66160 -13.27378 -13.02789 -12.87375 -12.71259 -12.48655 -12.47010 -12.29364 -12.15912 -11.88028 -11.73444 -11.55430 -11.40940 -11.35390 -11.10141 -11.03907 -10.95681 -10.82966 -10.43918 -10.24188 -9.92179 -9.58211 -9.52777 -9.03162 -8.76673 -8.64915 -7.93875 -7.45698 -6.26195 -4.33679 1.07497 1.15903 2.32030 2.76215 2.91031 3.20636 3.27139 3.32751 3.51195 3.70697 3.84036 4.05687 4.17139 4.29848 4.53785 4.62927 4.75847 4.82566 4.87494 4.96743 5.07635 5.19904 5.26625 5.31442 5.34434 5.42858 5.52995 5.58219 5.70455 5.71225 5.73738 5.81356 5.90840 5.94478 6.02654 6.10717 6.20642 6.25603 6.29666 6.37564 6.44063 6.54546 6.71363 6.74743 6.92665 7.04863 7.44665 7.63799 7.66832 7.88314 8.04950 8.24473 8.64704 8.74559 9.32571 10.81130 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.002550 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.108762 B =10978.109628 C =11317.621163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.290 4.290 4 C 0.263 3.737 5 N -0.628 5.628 6 C 0.533 3.467 7 O -0.511 6.511 8 C -0.034 4.034 9 C -0.136 4.136 10 C -0.101 4.101 11 C -0.082 4.082 12 C -0.086 4.086 13 C -0.110 4.110 14 C -0.115 4.115 15 C -0.117 4.117 16 C -0.099 4.099 17 C -0.090 4.090 18 N -0.321 5.321 19 N -0.316 5.316 20 C 0.259 3.741 21 C -0.535 4.535 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.892 5.892 25 Si 0.906 3.094 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.159 0.841 33 H 0.407 0.593 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.618 20.350 -5.194 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.010 3.990 5 N -0.276 5.276 6 C 0.318 3.682 7 O -0.384 6.384 8 C -0.037 4.037 9 C -0.194 4.194 10 C -0.139 4.139 11 C -0.119 4.119 12 C -0.086 4.086 13 C -0.128 4.128 14 C -0.133 4.133 15 C -0.135 4.135 16 C -0.117 4.117 17 C -0.091 4.091 18 N -0.151 5.151 19 N -0.098 5.098 20 C 0.141 3.859 21 C -0.574 4.574 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.197 1.197 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.176 0.824 33 H 0.243 0.757 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.445 19.346 -5.232 23.591 hybrid contribution -0.009 -0.259 0.857 0.895 sum 12.437 19.087 -4.375 23.198 Atomic orbital electron populations 1.20335 0.87885 1.02826 1.03169 1.21063 0.94903 0.87173 1.00890 1.21229 0.89723 0.99761 1.21367 1.19016 0.87261 0.89610 1.03091 1.42604 1.07386 1.05125 1.72487 1.20330 0.90795 0.81380 0.75690 1.90624 1.26469 1.73707 1.47620 1.20345 0.92442 0.96439 0.94500 1.21843 0.99360 1.02643 0.95542 1.22358 0.99872 0.90455 1.01228 1.21091 0.98121 0.96337 0.96333 1.20537 0.97658 0.95183 0.95200 1.20612 0.98961 0.98597 0.94589 1.21081 1.00039 0.92356 0.99824 1.21059 0.98371 0.98103 0.95982 1.20731 0.98178 0.97382 0.95447 1.20162 0.99314 0.94074 0.95502 1.77250 0.99946 1.08482 1.29448 1.48980 1.00964 1.07770 1.52134 1.19685 0.95959 0.71320 0.98945 1.21317 1.46656 0.98051 0.91353 0.91768 1.24928 0.94676 0.96058 0.98135 1.69922 1.44817 1.07166 1.31086 0.86353 0.78675 0.77901 0.83754 1.20291 1.20867 1.19698 0.90419 0.90824 0.90858 0.82394 0.75652 0.91735 0.90897 0.91080 0.88778 0.89706 0.90241 0.89936 0.86114 0.85779 0.85562 0.86215 0.93025 0.92811 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.01 0.36 -1.09 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -6.06 9.52 -39.83 -0.38 -6.43 16 4 C 0.26 5.42 8.11 -154.39 -1.25 4.17 16 5 N -0.63 -10.11 4.80 -11.13 -0.05 -10.17 16 6 C 0.53 8.02 6.44 -10.99 -0.07 7.95 16 7 O -0.51 -9.14 12.62 5.55 0.07 -9.07 16 8 C -0.03 -0.37 0.73 -155.78 -0.11 -0.48 16 9 C -0.14 -1.22 8.36 37.16 0.31 -0.91 16 10 C -0.10 -0.97 5.87 -25.32 -0.15 -1.12 16 11 C -0.08 -0.64 6.76 -26.85 -0.18 -0.82 16 12 C -0.09 -0.83 6.14 -104.20 -0.64 -1.47 16 13 C -0.11 -0.96 10.04 -39.53 -0.40 -1.36 16 14 C -0.12 -1.00 10.05 -39.62 -0.40 -1.40 16 15 C -0.12 -1.14 10.05 -39.62 -0.40 -1.54 16 16 C -0.10 -1.10 9.52 -39.54 -0.38 -1.48 16 17 C -0.09 -0.99 4.91 -104.21 -0.51 -1.50 16 18 N -0.32 -7.46 12.59 31.44 0.40 -7.06 16 19 N -0.32 -7.56 3.59 -58.33 -0.21 -7.77 16 20 C 0.26 6.67 5.99 -5.20 -0.03 6.63 16 21 C -0.54 -14.80 9.39 -34.44 -0.32 -15.12 16 22 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 25 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.27 7.06 -51.93 -0.37 0.91 16 32 H 0.16 3.21 5.92 -52.49 -0.31 2.90 16 33 H 0.41 5.55 6.44 -40.82 -0.26 5.29 16 34 H 0.06 0.56 7.50 -51.93 -0.39 0.17 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.08 7.02 -51.93 -0.36 0.71 16 38 H 0.08 0.68 7.90 -51.93 -0.41 0.27 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.32 6.11 -52.48 -0.32 1.00 16 45 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 46 H 0.05 1.37 7.03 -51.93 -0.37 1.01 16 47 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -32.57 384.37 -10.06 -42.63 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.56 Total: 6.80 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -5.21 Total: -12.91 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.87 Total: -49.37 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.57 -10.06 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592614898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.972 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds