Wall clock time and date at job start Tue Mar 31 2020 22:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35234 * 126.06814 * 2 1 4 4 C 1.40415 * 107.86352 * 180.24361 * 3 2 1 5 5 N 1.40156 * 125.97200 * 179.76129 * 4 3 2 6 6 C 1.34782 * 120.00071 * 0.02562 * 5 4 3 7 7 O 1.21287 * 120.00089 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99926 * 180.02562 * 6 5 4 9 9 C 1.53009 * 110.26909 * 302.07197 * 8 6 5 10 10 C 1.54350 * 110.30306 * 179.97438 * 8 6 5 11 11 C 1.54342 * 102.39220 * 214.72629 * 10 8 6 12 12 C 1.51375 * 105.17025 * 26.34645 * 11 10 8 13 13 C 1.38498 * 130.39063 * 162.80777 * 12 11 10 14 14 C 1.38104 * 120.21150 * 180.02562 * 13 12 11 15 15 C 1.38253 * 119.93983 * 0.02562 * 14 13 12 16 16 C 1.38104 * 119.93003 * 359.97438 * 15 14 13 17 17 C 1.38218 * 109.75786 * 342.81126 * 12 11 10 18 18 N 1.31217 * 108.05429 * 359.75716 * 4 3 2 19 19 N 1.34973 * 126.06518 * 179.82887 * 2 1 3 20 20 C 1.46491 * 125.97659 * 0.02562 * 19 2 1 21 21 C 1.50702 * 109.46957 * 269.71271 * 20 19 2 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48501 * 109.47188 * 90.00793 * 25 23 21 27 27 H 1.48501 * 109.47085 * 210.00372 * 25 23 21 28 28 H 1.48498 * 109.47634 * 330.00608 * 25 23 21 29 29 H 1.09003 * 109.47496 * 270.17449 * 1 2 3 30 30 H 1.09004 * 109.47405 * 30.17152 * 1 2 3 31 31 H 1.09002 * 109.47222 * 150.17058 * 1 2 3 32 32 H 1.07997 * 126.07244 * 0.02655 * 3 2 1 33 33 H 0.97003 * 119.99906 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.46865 * 59.29726 * 9 8 6 35 35 H 1.08998 * 109.46967 * 179.30240 * 9 8 6 36 36 H 1.08997 * 109.46671 * 299.30247 * 9 8 6 37 37 H 1.08992 * 110.82202 * 332.95257 * 10 8 6 38 38 H 1.08995 * 110.82088 * 96.50316 * 10 8 6 39 39 H 1.08999 * 110.30202 * 145.26928 * 11 10 8 40 40 H 1.08998 * 110.30955 * 267.32951 * 11 10 8 41 41 H 1.07995 * 119.89331 * 359.97438 * 13 12 11 42 42 H 1.08007 * 120.03152 * 180.02562 * 14 13 12 43 43 H 1.08001 * 120.03526 * 180.02562 * 15 14 13 44 44 H 1.08006 * 119.89329 * 180.02562 * 16 15 14 45 45 H 1.09004 * 109.47166 * 149.71537 * 20 19 2 46 46 H 1.08994 * 109.47507 * 29.71244 * 20 19 2 47 47 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 -0.0057 5 7 4.7735 1.4748 -0.0123 6 6 4.6367 2.8156 -0.0130 7 8 3.5303 3.3124 -0.0085 8 6 5.8586 3.6976 -0.0207 9 6 6.7411 3.3913 1.1911 10 6 5.4456 5.1848 -0.0208 11 6 6.5463 5.8342 -0.8862 12 6 7.0340 4.7307 -1.8004 13 6 7.7655 4.7957 -2.9747 14 6 8.1006 3.6383 -3.6496 15 6 7.7045 2.4105 -3.1527 16 6 6.9750 2.3437 -1.9820 17 6 6.6388 3.5031 -1.3031 18 7 3.6336 -0.6577 -0.0037 19 7 2.3016 -1.0910 0.0033 20 6 1.8499 -2.4846 0.0069 21 6 1.7013 -2.9607 1.4290 22 1 1.9209 -2.2920 2.2481 23 6 1.2790 -4.2482 1.6843 24 7 1.0112 -5.0624 0.6868 25 14 1.0874 -4.8360 3.4470 26 1 -0.2937 -4.5553 3.9151 27 1 1.3448 -6.2970 3.5124 28 1 2.0587 -4.1229 4.3150 29 1 -0.3634 0.0031 1.0277 30 1 -0.3634 0.8885 -0.5165 31 1 -0.3634 -0.8915 -0.5112 32 1 1.9720 2.1211 0.0004 33 1 5.6584 1.0775 -0.0163 34 1 7.0445 2.3447 1.1643 35 1 7.6261 4.0270 1.1661 36 1 6.1811 3.5838 2.1062 37 1 4.4653 5.3147 -0.4792 38 1 5.4584 5.5905 0.9908 39 1 6.1320 6.6550 -1.4717 40 1 7.3604 6.1928 -0.2564 41 1 8.0742 5.7545 -3.3641 42 1 8.6716 3.6924 -4.5648 43 1 7.9661 1.5044 -3.6791 44 1 6.6663 1.3842 -1.5942 45 1 2.5823 -3.1053 -0.5094 46 1 0.8891 -2.5565 -0.5026 47 1 0.7144 -5.9683 0.8665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592614898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:51 Heat of formation + Delta-G solvation = 45.511160 kcal Electronic energy + Delta-G solvation = -28949.532910 eV Core-core repulsion = 25097.738650 eV Total energy + Delta-G solvation = -3851.794259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.55450 -41.79611 -40.00247 -37.00984 -36.37298 -35.37994 -33.51523 -32.76208 -32.43975 -30.78764 -29.67007 -28.63027 -27.91221 -26.53699 -25.17430 -23.81782 -23.59894 -22.04200 -21.55269 -21.22854 -20.13570 -18.82198 -18.12374 -17.76311 -17.20855 -17.07761 -16.57888 -16.41137 -16.04562 -15.96411 -15.74770 -15.42502 -14.87398 -14.67287 -14.40006 -14.32853 -13.98162 -13.84989 -13.79674 -13.60672 -13.53862 -13.37153 -13.18265 -13.14459 -12.86719 -12.67780 -12.57837 -12.42440 -12.24218 -12.14047 -12.06554 -11.75294 -11.70755 -11.55321 -11.38116 -10.87246 -10.74535 -9.77750 -9.62854 -9.49693 -9.18564 -8.34772 -6.52404 0.33165 0.43592 0.86486 1.28145 1.36258 1.37583 1.38804 1.49972 2.14374 2.24403 2.37084 2.80470 2.95136 3.22418 3.37045 3.55255 3.85088 3.88753 4.06489 4.07135 4.13896 4.15859 4.31338 4.40604 4.56255 4.58571 4.63489 4.67690 4.68620 4.75321 4.82809 4.86000 4.90357 4.94407 4.96681 5.03289 5.05955 5.10372 5.16409 5.20785 5.23059 5.31735 5.50242 5.51747 5.58815 5.64610 5.78703 5.89060 6.05715 6.17991 6.22915 6.59468 6.92200 7.02621 7.18558 8.71493 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018176 B = 0.002550 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.108762 B =10978.109628 C =11317.621163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.088 3.912 3 C -0.300 4.300 4 C 0.271 3.729 5 N -0.622 5.622 6 C 0.530 3.470 7 O -0.540 6.540 8 C -0.025 4.025 9 C -0.136 4.136 10 C -0.102 4.102 11 C -0.074 4.074 12 C -0.092 4.092 13 C -0.112 4.112 14 C -0.115 4.115 15 C -0.130 4.130 16 C -0.120 4.120 17 C -0.109 4.109 18 N -0.357 5.357 19 N -0.341 5.341 20 C 0.275 3.725 21 C -0.553 4.553 22 H 0.049 0.951 23 C 0.023 3.977 24 N -0.918 5.918 25 Si 0.972 3.028 26 H -0.264 1.264 27 H -0.273 1.273 28 H -0.276 1.276 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.166 0.834 33 H 0.418 0.582 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.136 0.864 44 H 0.108 0.892 45 H 0.024 0.976 46 H 0.053 0.947 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.586 22.479 -4.765 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C -0.330 4.330 4 C 0.017 3.983 5 N -0.272 5.272 6 C 0.318 3.682 7 O -0.415 6.415 8 C -0.029 4.029 9 C -0.193 4.193 10 C -0.140 4.140 11 C -0.111 4.111 12 C -0.092 4.092 13 C -0.130 4.130 14 C -0.133 4.133 15 C -0.148 4.148 16 C -0.139 4.139 17 C -0.110 4.110 18 N -0.188 5.188 19 N -0.123 5.123 20 C 0.156 3.844 21 C -0.591 4.591 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.796 3.204 26 H -0.189 1.189 27 H -0.198 1.198 28 H -0.201 1.201 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.183 0.817 33 H 0.256 0.744 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.165 0.835 42 H 0.167 0.833 43 H 0.154 0.846 44 H 0.126 0.874 45 H 0.042 0.958 46 H 0.070 0.930 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.432 21.496 -4.814 25.800 hybrid contribution -0.258 -0.829 0.634 1.075 sum 13.174 20.667 -4.180 24.862 Atomic orbital electron populations 1.20477 0.85229 1.04234 1.04033 1.21753 0.96694 0.86415 0.99360 1.21413 0.89896 0.99911 1.21810 1.19376 0.88822 0.89292 1.00835 1.42807 1.06683 1.05317 1.72383 1.21287 0.91978 0.80924 0.74011 1.90592 1.28128 1.74040 1.48734 1.20424 0.90601 0.96135 0.95707 1.21888 0.99803 1.03085 0.94509 1.22402 0.99481 0.89565 1.02570 1.21117 0.98040 0.95834 0.96084 1.20844 0.97510 0.95142 0.95697 1.20966 0.98183 0.99782 0.94036 1.21427 0.99508 0.91837 1.00495 1.21287 0.98423 0.99336 0.95768 1.20815 0.99374 0.97191 0.96476 1.20224 1.00231 0.94739 0.95772 1.77175 1.00115 1.09905 1.31612 1.48792 1.01711 1.07547 1.54280 1.19255 0.94913 0.72327 0.97863 1.21421 1.47534 0.98513 0.91678 0.93284 1.25738 0.93889 0.95864 1.02311 1.70004 1.44905 1.07623 1.33086 0.85346 0.78997 0.77584 0.78511 1.18881 1.19840 1.20086 0.89685 0.87588 0.91210 0.81681 0.74408 0.92017 0.88565 0.90919 0.91005 0.87942 0.88889 0.87526 0.83487 0.83308 0.84624 0.87351 0.95798 0.92972 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.80 10.11 71.24 0.72 -2.07 16 2 C 0.09 3.83 6.92 41.38 0.29 4.12 16 3 C -0.30 -12.72 9.52 22.11 0.21 -12.51 16 4 C 0.27 11.50 8.11 133.33 1.08 12.58 16 5 N -0.62 -20.56 4.80 -307.51 -1.48 -22.03 16 6 C 0.53 16.06 6.44 87.65 0.56 16.62 16 7 O -0.54 -19.48 12.62 -3.05 -0.04 -19.52 16 8 C -0.03 -0.53 0.73 -53.00 -0.04 -0.57 16 9 C -0.14 -2.22 8.36 71.99 0.60 -1.62 16 10 C -0.10 -1.79 5.87 31.51 0.18 -1.61 16 11 C -0.07 -0.94 6.76 30.52 0.21 -0.73 16 12 C -0.09 -1.58 6.14 -19.59 -0.12 -1.70 16 13 C -0.11 -1.65 10.04 22.30 0.22 -1.43 16 14 C -0.11 -1.75 10.05 22.24 0.22 -1.53 16 15 C -0.13 -2.45 10.05 22.24 0.22 -2.22 16 16 C -0.12 -2.67 9.52 22.30 0.21 -2.46 16 17 C -0.11 -2.30 4.91 -19.60 -0.10 -2.39 16 18 N -0.36 -17.32 12.59 -54.45 -0.69 -18.01 16 19 N -0.34 -16.92 3.59 -338.46 -1.22 -18.13 16 20 C 0.28 14.80 5.99 85.64 0.51 15.31 16 21 C -0.55 -31.40 9.39 25.60 0.24 -31.16 16 22 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 23 C 0.02 1.27 5.46 84.66 0.46 1.73 16 24 N -0.92 -52.19 13.29 21.45 0.28 -51.91 16 25 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 26 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 29 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.07 2.43 7.06 -2.39 -0.02 2.41 16 32 H 0.17 6.76 5.92 -2.91 -0.02 6.74 16 33 H 0.42 11.83 6.44 -92.71 -0.60 11.23 16 34 H 0.06 1.04 7.50 -2.39 -0.02 1.02 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.60 7.02 -2.39 -0.02 1.58 16 38 H 0.10 1.40 7.90 -2.39 -0.02 1.38 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 43 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 44 H 0.11 2.53 6.11 -2.91 -0.02 2.51 16 45 H 0.02 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.05 2.77 7.03 -2.39 -0.02 2.75 16 47 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -71.82 384.37 5.00 -66.82 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.40 Total: 29.06 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 5.70 Total: -11.63 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -3.09 Total: -110.08 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.04 Total: -19.52 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -71.82 5.00 -66.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592614898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.331 kcal (2) G-P(sol) polarization free energy of solvation -71.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds