Wall clock time and date at job start Tue Mar 31 2020 22:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30820 * 119.23010 * 2 1 4 4 C 1.33793 * 121.71904 * 180.02562 * 3 2 1 5 5 C 1.40535 * 120.82927 * 180.02562 * 4 3 2 6 6 C 1.36133 * 119.81235 * 179.97438 * 5 4 3 7 7 C 1.39341 * 121.09769 * 359.97438 * 6 5 4 8 8 C 1.36142 * 120.83576 * 359.97199 * 7 6 5 9 9 C 1.40544 * 119.61726 * 0.05255 * 8 7 6 10 10 C 1.40492 * 121.22070 * 180.02562 * 9 8 7 11 11 C 1.39051 * 117.96346 * 179.97438 * 10 9 8 12 12 C 1.47753 * 120.26699 * 180.02562 * 11 10 9 13 13 O 1.21564 * 119.99822 * 227.23971 * 12 11 10 14 14 N 1.34776 * 120.00285 * 47.24070 * 12 11 10 15 15 C 1.47079 * 120.88306 * 5.45250 * 14 12 11 16 16 C 1.53692 * 108.27695 * 128.75215 * 15 14 12 17 17 N 1.46900 * 109.25418 * 54.08879 * 16 15 14 18 18 C 1.46910 * 110.99814 * 172.60533 * 17 16 15 19 19 C 1.50697 * 109.47147 * 55.70033 * 18 17 16 20 20 H 1.08008 * 119.99773 * 5.15887 * 19 18 17 21 21 C 1.37874 * 119.99885 * 185.15653 * 19 18 17 22 22 N 1.31510 * 120.00410 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47508 * 60.00308 * 23 21 19 25 25 H 1.48504 * 109.47092 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47279 * 300.00118 * 23 21 19 27 27 C 1.46895 * 111.26755 * 296.75285 * 17 16 15 28 28 C 1.47088 * 120.88158 * 185.73477 * 14 12 11 29 29 H 1.09000 * 109.47503 * 86.11783 * 1 2 3 30 30 H 1.09004 * 109.47244 * 206.11809 * 1 2 3 31 31 H 1.09008 * 109.47161 * 326.11638 * 1 2 3 32 32 H 1.07997 * 120.09433 * 359.94793 * 5 4 3 33 33 H 1.08001 * 119.45036 * 179.71482 * 6 5 4 34 34 H 1.08003 * 119.58731 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.18958 * 180.02562 * 8 7 6 36 36 H 1.08001 * 121.02055 * 359.93046 * 10 9 8 37 37 H 1.08995 * 109.62951 * 248.52829 * 15 14 12 38 38 H 1.09002 * 109.62403 * 9.10841 * 15 14 12 39 39 H 1.08998 * 109.64939 * 294.08252 * 16 15 14 40 40 H 1.09005 * 109.42251 * 173.94954 * 16 15 14 41 41 H 1.09003 * 109.46840 * 175.69845 * 18 17 16 42 42 H 1.08995 * 109.46881 * 295.69658 * 18 17 16 43 43 H 0.96998 * 120.00365 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.49488 * 303.14458 * 27 17 16 45 45 H 1.09008 * 109.51382 * 183.08002 * 27 17 16 46 46 H 1.09001 * 109.62941 * 350.89488 * 28 14 12 47 47 H 1.08997 * 109.62765 * 111.47759 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4824 1.1997 -0.0005 5 6 4.1496 2.4366 0.0000 6 6 5.5105 2.4716 0.0000 7 6 6.2606 1.2973 0.0000 8 6 5.6511 0.0799 0.0006 9 6 4.2476 0.0058 0.0001 10 6 3.5838 -1.2323 0.0012 11 6 2.1933 -1.2267 0.0011 12 6 1.4433 -2.4997 0.0028 13 8 0.5190 -2.6616 -0.7700 14 7 1.7840 -3.4814 0.8611 15 6 2.8188 -3.2648 1.8836 16 6 2.2466 -3.6885 3.2457 17 7 1.7447 -5.0660 3.1530 18 6 1.3494 -5.5723 4.4742 19 6 0.3371 -4.6395 5.0874 20 1 -0.0433 -3.8049 4.5169 21 6 -0.1036 -4.8514 6.3765 22 7 0.3591 -5.8679 7.0709 23 14 -1.3579 -3.6947 7.1368 24 1 -2.6016 -3.7105 6.3255 25 1 -1.6638 -4.1369 8.5211 26 1 -0.8052 -2.3167 7.1686 27 6 0.6335 -5.1650 2.1973 28 6 1.1351 -4.7999 0.7961 29 1 -0.3634 0.0696 -1.0253 30 1 -0.3634 -0.9228 0.4524 31 1 -0.3634 0.8532 0.5730 32 1 3.5842 3.3568 0.0000 33 1 6.0171 3.4254 -0.0042 34 1 7.3391 1.3535 -0.0004 35 1 6.2427 -0.8236 0.0010 36 1 4.1365 -2.1602 0.0013 37 1 3.6970 -3.8661 1.6488 38 1 3.0907 -2.2096 1.9115 39 1 1.4304 -3.0218 3.5237 40 1 3.0316 -3.6375 4.0003 41 1 0.9110 -6.5644 4.3668 42 1 2.2268 -5.6305 5.1183 43 1 0.0488 -6.0172 7.9777 44 1 -0.1603 -4.4778 2.4899 45 1 0.2481 -6.1846 2.1914 46 1 0.2934 -4.7601 0.1046 47 1 1.8547 -5.5458 0.4589 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602200796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:20 Heat of formation + Delta-G solvation = 32.488357 kcal Electronic energy + Delta-G solvation = -29415.985889 eV Core-core repulsion = 25563.626918 eV Total energy + Delta-G solvation = -3852.358971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33640 -39.82089 -37.83915 -37.09675 -34.72108 -33.74241 -32.36379 -32.14365 -31.04056 -30.16827 -28.33669 -27.85123 -25.69314 -24.58215 -23.41061 -22.78238 -22.40691 -22.25076 -20.82827 -19.25905 -18.34995 -17.42919 -16.92684 -16.33439 -16.19576 -15.77933 -15.33424 -14.86420 -14.76908 -14.63523 -14.48253 -14.41151 -13.97198 -13.76355 -13.54016 -13.41400 -13.16692 -13.13003 -12.70486 -12.31493 -12.17970 -12.00152 -11.89542 -11.73030 -11.53329 -11.22254 -11.16391 -11.06891 -10.76801 -10.68285 -10.65306 -10.34190 -10.09451 -9.94103 -9.72973 -9.54202 -8.92185 -8.54669 -8.49980 -8.48447 -7.33488 -6.10638 -4.20303 0.01585 0.44126 1.63788 2.39623 2.81067 3.08481 3.24373 3.29621 3.32399 3.81898 3.93192 4.22953 4.32141 4.34748 4.43889 4.53426 4.71758 4.81366 4.84090 4.94743 5.13345 5.19515 5.23125 5.38353 5.40011 5.49427 5.51047 5.59391 5.62315 5.63962 5.65238 5.78890 5.80430 5.91550 5.99293 6.03413 6.04674 6.11553 6.27167 6.34550 6.53879 6.54902 6.62670 6.65091 7.13330 7.42119 7.42617 7.70377 7.80507 7.89139 8.11693 8.13606 8.18879 8.89013 9.47398 10.94588 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.003082 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.827361 B = 9083.184552 C = 9409.178473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.208 3.792 3 N -0.480 5.480 4 C 0.147 3.853 5 C -0.100 4.100 6 C -0.093 4.093 7 C -0.124 4.124 8 C -0.085 4.085 9 C -0.116 4.116 10 C -0.017 4.017 11 C -0.174 4.174 12 C 0.564 3.436 13 O -0.535 6.535 14 N -0.597 5.597 15 C 0.103 3.897 16 C 0.052 3.948 17 N -0.540 5.540 18 C 0.189 3.811 19 C -0.554 4.554 20 H 0.055 0.945 21 C 0.067 3.933 22 N -0.889 5.889 23 Si 0.888 3.112 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.277 1.277 27 C 0.048 3.952 28 C 0.116 3.884 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.029 0.971 42 H 0.037 0.963 43 H 0.264 0.736 44 H 0.042 0.958 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.143 12.272 -15.036 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.055 3.945 3 N -0.189 5.189 4 C 0.025 3.975 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.142 4.142 8 C -0.103 4.103 9 C -0.118 4.118 10 C -0.043 4.043 11 C -0.179 4.179 12 C 0.351 3.649 13 O -0.413 6.413 14 N -0.330 5.330 15 C -0.020 4.020 16 C -0.077 4.077 17 N -0.265 5.265 18 C 0.063 3.937 19 C -0.593 4.593 20 H 0.073 0.927 21 C -0.136 4.136 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.202 1.202 27 C -0.081 4.081 28 C -0.006 4.006 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.165 0.835 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.631 12.612 -15.419 22.579 hybrid contribution -0.784 0.311 1.045 1.342 sum 9.847 12.923 -14.375 21.693 Atomic orbital electron populations 1.20863 0.87696 1.03928 1.03971 1.21458 0.97372 0.86295 0.89374 1.67848 1.08302 1.27981 1.14751 1.18987 0.89085 0.93050 0.96383 1.20815 0.94222 0.96386 1.00408 1.20964 0.93676 0.98839 0.97835 1.20921 1.00432 0.92267 1.00612 1.21046 0.92402 0.98755 0.98141 1.18757 0.94978 0.93523 1.04538 1.22006 0.92927 0.97863 0.91488 1.20818 0.94417 0.95281 1.07409 1.17996 0.83264 0.82801 0.80871 1.90775 1.29106 1.80828 1.40587 1.48135 1.39517 1.12906 1.32397 1.22308 0.90462 1.00892 0.88354 1.22292 0.99904 0.91577 0.93964 1.62508 1.32976 1.18879 1.12105 1.19761 0.95636 0.95127 0.83151 1.21686 1.25448 1.12975 0.99179 0.92656 1.24939 0.96319 0.95226 0.97084 1.69919 1.43339 1.28653 1.10851 0.86720 0.81995 0.81291 0.78432 1.20191 1.21092 1.20236 1.22268 0.93653 1.01554 0.90650 1.21896 0.97958 0.82123 0.98628 0.89354 0.89945 0.90262 0.84606 0.85207 0.85345 0.84939 0.83483 0.90761 0.90329 0.93591 0.90177 0.95307 0.94517 0.92647 0.93990 0.90222 0.89202 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.26 36.00 0.33 -1.08 16 2 C 0.21 2.96 6.82 -82.15 -0.56 2.40 16 3 N -0.48 -6.76 10.20 -6.94 -0.07 -6.83 16 4 C 0.15 1.84 6.61 -84.78 -0.56 1.28 16 5 C -0.10 -0.99 9.97 -39.47 -0.39 -1.39 16 6 C -0.09 -0.72 9.94 -39.93 -0.40 -1.11 16 7 C -0.12 -0.91 9.96 -39.92 -0.40 -1.31 16 8 C -0.08 -0.72 9.77 -39.47 -0.39 -1.11 16 9 C -0.12 -1.30 5.74 -106.82 -0.61 -1.92 16 10 C -0.02 -0.19 7.44 -38.43 -0.29 -0.48 16 11 C -0.17 -2.41 4.87 -104.83 -0.51 -2.92 16 12 C 0.56 8.73 6.35 -12.37 -0.08 8.65 16 13 O -0.53 -9.51 14.89 5.31 0.08 -9.43 16 14 N -0.60 -8.97 3.00 -173.33 -0.52 -9.49 16 15 C 0.10 1.43 5.36 -3.37 -0.02 1.41 16 16 C 0.05 0.93 5.10 -3.46 -0.02 0.92 16 17 N -0.54 -10.73 4.83 -235.46 -1.14 -11.87 16 18 C 0.19 4.61 5.14 -4.97 -0.03 4.58 16 19 C -0.55 -14.73 7.76 -34.44 -0.27 -15.00 16 20 H 0.06 1.48 5.89 -52.48 -0.31 1.17 16 21 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 22 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 23 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.05 0.88 5.30 -3.70 -0.02 0.86 16 28 C 0.12 1.77 6.61 -3.60 -0.02 1.75 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.19 6.37 -51.93 -0.33 0.86 16 31 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.15 1.35 7.28 -52.49 -0.38 0.97 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.00 5.26 -51.93 -0.27 0.73 16 39 H 0.05 0.94 6.60 -51.93 -0.34 0.60 16 40 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 41 H 0.03 0.75 8.00 -51.93 -0.42 0.34 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.04 0.87 7.15 -51.93 -0.37 0.50 16 45 H 0.08 1.42 8.01 -51.92 -0.42 1.01 16 46 H 0.09 1.37 7.04 -51.93 -0.37 1.01 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -31.38 375.48 -11.16 -42.54 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.57 Total: 0.76 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -4.32 Total: -2.70 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.99 Total: -52.97 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.38 -11.16 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.032 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds