Wall clock time and date at job start Tue Mar 31 2020 22:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30820 * 119.23010 * 2 1 4 4 C 1.33793 * 121.71904 * 180.02562 * 3 2 1 5 5 C 1.40535 * 120.82927 * 180.02562 * 4 3 2 6 6 C 1.36133 * 119.81235 * 179.97438 * 5 4 3 7 7 C 1.39341 * 121.09769 * 359.97438 * 6 5 4 8 8 C 1.36142 * 120.83576 * 359.97199 * 7 6 5 9 9 C 1.40544 * 119.61726 * 0.05255 * 8 7 6 10 10 C 1.40492 * 121.22070 * 180.02562 * 9 8 7 11 11 C 1.39051 * 117.96346 * 179.97438 * 10 9 8 12 12 C 1.47753 * 120.26699 * 180.02562 * 11 10 9 13 13 O 1.21564 * 119.99822 * 227.23971 * 12 11 10 14 14 N 1.34776 * 120.00285 * 47.24070 * 12 11 10 15 15 C 1.47079 * 120.88306 * 5.45250 * 14 12 11 16 16 C 1.53692 * 108.27695 * 128.75215 * 15 14 12 17 17 N 1.46900 * 109.25418 * 54.08879 * 16 15 14 18 18 C 1.46910 * 110.99814 * 172.60533 * 17 16 15 19 19 C 1.50697 * 109.47147 * 55.70033 * 18 17 16 20 20 H 1.08008 * 119.99773 * 5.15887 * 19 18 17 21 21 C 1.37874 * 119.99885 * 185.15653 * 19 18 17 22 22 N 1.31510 * 120.00410 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47508 * 60.00308 * 23 21 19 25 25 H 1.48504 * 109.47092 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47279 * 300.00118 * 23 21 19 27 27 C 1.46895 * 111.26755 * 296.75285 * 17 16 15 28 28 C 1.47088 * 120.88158 * 185.73477 * 14 12 11 29 29 H 1.09000 * 109.47503 * 86.11783 * 1 2 3 30 30 H 1.09004 * 109.47244 * 206.11809 * 1 2 3 31 31 H 1.09008 * 109.47161 * 326.11638 * 1 2 3 32 32 H 1.07997 * 120.09433 * 359.94793 * 5 4 3 33 33 H 1.08001 * 119.45036 * 179.71482 * 6 5 4 34 34 H 1.08003 * 119.58731 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.18958 * 180.02562 * 8 7 6 36 36 H 1.08001 * 121.02055 * 359.93046 * 10 9 8 37 37 H 1.08995 * 109.62951 * 248.52829 * 15 14 12 38 38 H 1.09002 * 109.62403 * 9.10841 * 15 14 12 39 39 H 1.08998 * 109.64939 * 294.08252 * 16 15 14 40 40 H 1.09005 * 109.42251 * 173.94954 * 16 15 14 41 41 H 1.09003 * 109.46840 * 175.69845 * 18 17 16 42 42 H 1.08995 * 109.46881 * 295.69658 * 18 17 16 43 43 H 0.96998 * 120.00365 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.49488 * 303.14458 * 27 17 16 45 45 H 1.09008 * 109.51382 * 183.08002 * 27 17 16 46 46 H 1.09001 * 109.62941 * 350.89488 * 28 14 12 47 47 H 1.08997 * 109.62765 * 111.47759 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4824 1.1997 -0.0005 5 6 4.1496 2.4366 0.0000 6 6 5.5105 2.4716 0.0000 7 6 6.2606 1.2973 0.0000 8 6 5.6511 0.0799 0.0006 9 6 4.2476 0.0058 0.0001 10 6 3.5838 -1.2323 0.0012 11 6 2.1933 -1.2267 0.0011 12 6 1.4433 -2.4997 0.0028 13 8 0.5190 -2.6616 -0.7700 14 7 1.7840 -3.4814 0.8611 15 6 2.8188 -3.2648 1.8836 16 6 2.2466 -3.6885 3.2457 17 7 1.7447 -5.0660 3.1530 18 6 1.3494 -5.5723 4.4742 19 6 0.3371 -4.6395 5.0874 20 1 -0.0433 -3.8049 4.5169 21 6 -0.1036 -4.8514 6.3765 22 7 0.3591 -5.8679 7.0709 23 14 -1.3579 -3.6947 7.1368 24 1 -2.6016 -3.7105 6.3255 25 1 -1.6638 -4.1369 8.5211 26 1 -0.8052 -2.3167 7.1686 27 6 0.6335 -5.1650 2.1973 28 6 1.1351 -4.7999 0.7961 29 1 -0.3634 0.0696 -1.0253 30 1 -0.3634 -0.9228 0.4524 31 1 -0.3634 0.8532 0.5730 32 1 3.5842 3.3568 0.0000 33 1 6.0171 3.4254 -0.0042 34 1 7.3391 1.3535 -0.0004 35 1 6.2427 -0.8236 0.0010 36 1 4.1365 -2.1602 0.0013 37 1 3.6970 -3.8661 1.6488 38 1 3.0907 -2.2096 1.9115 39 1 1.4304 -3.0218 3.5237 40 1 3.0316 -3.6375 4.0003 41 1 0.9110 -6.5644 4.3668 42 1 2.2268 -5.6305 5.1183 43 1 0.0488 -6.0172 7.9777 44 1 -0.1603 -4.4778 2.4899 45 1 0.2481 -6.1846 2.1914 46 1 0.2934 -4.7601 0.1046 47 1 1.8547 -5.5458 0.4589 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602200796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:19 Heat of formation + Delta-G solvation = 12.844508 kcal Electronic energy + Delta-G solvation = -29416.837710 eV Core-core repulsion = 25563.626918 eV Total energy + Delta-G solvation = -3853.210792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.26869 -40.94108 -39.15673 -38.04686 -36.18459 -34.82910 -34.19610 -33.02550 -32.22509 -31.15448 -29.86571 -28.85689 -27.32534 -25.71517 -24.74175 -24.03114 -23.60292 -23.08629 -22.20867 -20.53497 -19.32553 -18.64294 -18.17967 -17.87265 -17.23796 -16.78456 -16.68942 -16.40884 -16.03063 -15.64215 -15.59082 -15.47618 -15.34041 -15.04183 -14.85038 -14.40727 -14.29038 -14.08103 -13.96484 -13.75863 -13.56859 -13.22859 -13.00728 -12.95699 -12.70873 -12.59252 -12.47864 -12.41141 -12.35931 -12.25555 -12.05766 -11.85500 -11.64760 -11.54515 -11.15993 -10.64000 -10.56053 -9.88113 -9.69861 -9.24497 -9.09108 -8.20059 -6.38728 -0.78267 -0.40682 0.86455 1.33219 1.33932 1.40928 1.41983 1.74883 2.04283 2.33123 3.01014 3.04727 3.05509 3.22612 3.29823 3.51431 3.56776 3.81982 3.90728 3.95521 4.07624 4.22831 4.24583 4.31588 4.33481 4.37124 4.46676 4.49123 4.58349 4.59819 4.68391 4.72232 4.76010 4.84920 4.88422 5.02134 5.03068 5.12205 5.13868 5.19595 5.30138 5.37415 5.39945 5.44042 5.49235 5.70498 5.87490 5.96499 6.12837 6.28909 6.41769 6.79001 6.81093 6.94428 7.32757 8.82241 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.003082 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.827361 B = 9083.184552 C = 9409.178473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.187 3.813 3 N -0.500 5.500 4 C 0.121 3.879 5 C -0.125 4.125 6 C -0.076 4.076 7 C -0.118 4.118 8 C -0.086 4.086 9 C -0.129 4.129 10 C -0.001 4.001 11 C -0.200 4.200 12 C 0.568 3.432 13 O -0.565 6.565 14 N -0.600 5.600 15 C 0.117 3.883 16 C 0.052 3.948 17 N -0.532 5.532 18 C 0.202 3.798 19 C -0.560 4.560 20 H 0.048 0.952 21 C 0.019 3.981 22 N -0.921 5.921 23 Si 0.948 3.052 24 H -0.275 1.275 25 H -0.278 1.278 26 H -0.272 1.272 27 C 0.052 3.948 28 C 0.127 3.873 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.174 0.826 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.014 0.986 40 H 0.080 0.920 41 H 0.008 0.992 42 H 0.015 0.985 43 H 0.266 0.734 44 H 0.011 0.989 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.149 13.660 -15.940 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.034 3.966 3 N -0.209 5.209 4 C 0.000 4.000 5 C -0.143 4.143 6 C -0.096 4.096 7 C -0.136 4.136 8 C -0.105 4.105 9 C -0.131 4.131 10 C -0.027 4.027 11 C -0.205 4.205 12 C 0.356 3.644 13 O -0.445 6.445 14 N -0.332 5.332 15 C -0.006 4.006 16 C -0.077 4.077 17 N -0.255 5.255 18 C 0.075 3.925 19 C -0.599 4.599 20 H 0.067 0.933 21 C -0.182 4.182 22 N -0.560 5.560 23 Si 0.774 3.226 24 H -0.200 1.200 25 H -0.203 1.203 26 H -0.197 1.197 27 C -0.078 4.078 28 C 0.004 3.996 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.180 0.820 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.191 0.809 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.033 0.967 40 H 0.099 0.901 41 H 0.026 0.974 42 H 0.034 0.966 43 H 0.075 0.925 44 H 0.029 0.971 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.650 14.013 -16.334 25.485 hybrid contribution -1.560 -0.012 1.301 2.032 sum 12.090 14.001 -15.032 23.836 Atomic orbital electron populations 1.20766 0.88037 1.03077 1.03982 1.21502 0.97543 0.86864 0.90657 1.67809 1.09625 1.27939 1.15521 1.19457 0.88788 0.94767 0.97019 1.21010 0.95492 0.95716 1.02125 1.21417 0.92726 1.00719 0.94735 1.21408 1.02254 0.91497 0.98443 1.21421 0.91120 1.00663 0.97259 1.19001 0.96414 0.92813 1.04883 1.22296 0.91916 0.99165 0.89348 1.20649 0.95458 0.93974 1.10448 1.18228 0.82760 0.83115 0.80247 1.90748 1.30475 1.81355 1.41885 1.48186 1.39714 1.12734 1.32546 1.22283 0.90542 1.02361 0.85374 1.22335 0.98901 0.89601 0.96900 1.62452 1.33063 1.20113 1.09914 1.19426 0.94002 0.93961 0.85107 1.21918 1.25661 1.12926 0.99358 0.93344 1.25691 0.98131 0.96666 0.97677 1.70019 1.44643 1.30119 1.11236 0.85764 0.79644 0.79458 0.77775 1.19986 1.20304 1.19732 1.22268 0.92478 1.00933 0.92085 1.21770 0.98702 0.83001 0.96080 0.89193 0.91847 0.89658 0.84353 0.82008 0.81815 0.82027 0.80854 0.87653 0.88726 0.96738 0.90142 0.97434 0.96639 0.92467 0.97072 0.90121 0.89266 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.83 9.26 71.23 0.66 -2.17 16 2 C 0.19 5.47 6.82 43.27 0.29 5.77 16 3 N -0.50 -14.27 10.20 -175.86 -1.79 -16.07 16 4 C 0.12 2.92 6.61 40.29 0.27 3.18 16 5 C -0.12 -2.27 9.97 22.34 0.22 -2.05 16 6 C -0.08 -0.88 9.94 22.05 0.22 -0.66 16 7 C -0.12 -1.16 9.96 22.05 0.22 -0.94 16 8 C -0.09 -1.10 9.77 22.34 0.22 -0.88 16 9 C -0.13 -2.60 5.74 -21.29 -0.12 -2.72 16 10 C 0.00 -0.03 7.44 23.01 0.17 0.14 16 11 C -0.20 -5.46 4.87 -20.00 -0.10 -5.56 16 12 C 0.57 17.51 6.35 86.76 0.55 18.06 16 13 O -0.56 -20.48 14.89 -3.92 -0.06 -20.54 16 14 N -0.60 -17.45 3.00 -820.55 -2.46 -19.91 16 15 C 0.12 3.03 5.36 86.50 0.46 3.49 16 16 C 0.05 1.86 5.10 86.54 0.44 2.30 16 17 N -0.53 -21.31 4.83 -898.87 -4.34 -25.65 16 18 C 0.20 10.16 5.14 85.55 0.44 10.60 16 19 C -0.56 -30.60 7.76 25.60 0.20 -30.41 16 20 H 0.05 2.68 5.89 -2.91 -0.02 2.66 16 21 C 0.02 1.03 5.46 84.65 0.46 1.49 16 22 N -0.92 -53.76 13.29 21.45 0.28 -53.48 16 23 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 24 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 27 C 0.05 1.92 5.30 86.38 0.46 2.38 16 28 C 0.13 3.77 6.61 86.35 0.57 4.34 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 1.97 6.37 -2.38 -0.02 1.95 16 31 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 34 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 35 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 36 H 0.17 2.52 7.28 -2.91 -0.02 2.50 16 37 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.09 2.21 5.26 -2.39 -0.01 2.20 16 39 H 0.01 0.61 6.60 -2.39 -0.02 0.59 16 40 H 0.08 2.86 8.11 -2.38 -0.02 2.84 16 41 H 0.01 0.41 8.00 -2.39 -0.02 0.39 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.01 0.47 7.15 -2.39 -0.02 0.46 16 45 H 0.08 2.94 8.01 -2.38 -0.02 2.92 16 46 H 0.09 2.71 7.04 -2.39 -0.02 2.70 16 47 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -71.16 375.48 0.28 -70.88 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.99 Total: 12.36 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 5.64 Total: 6.38 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -8.31 Total: -115.11 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.06 Total: -20.54 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.16 0.28 -70.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.726 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds