Wall clock time and date at job start Tue Mar 31 2020 22:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36614 * 120.91861 * 2 1 4 4 C 1.39275 * 119.90330 * 179.97438 * 3 2 1 5 5 N 1.31142 * 121.77409 * 359.97438 * 4 3 2 6 6 C 1.33628 * 121.39141 * 0.02562 * 5 4 3 7 7 C 1.40767 * 120.83617 * 179.97438 * 6 5 4 8 8 C 1.35699 * 120.10775 * 180.02562 * 7 6 5 9 9 C 1.40635 * 120.92671 * 0.02562 * 8 7 6 10 10 C 1.47772 * 119.79942 * 179.97438 * 9 8 7 11 11 O 1.21561 * 119.99491 * 130.33982 * 10 9 8 12 12 N 1.34776 * 119.99972 * 310.34002 * 10 9 8 13 13 C 1.47081 * 120.87898 * 183.51644 * 12 10 9 14 14 C 1.53697 * 108.27417 * 128.75569 * 13 12 10 15 15 N 1.46896 * 109.25498 * 54.08692 * 14 13 12 16 16 C 1.46902 * 110.99707 * 172.60604 * 15 14 13 17 17 C 1.50695 * 109.47030 * 294.29525 * 16 15 14 18 18 H 1.07997 * 120.00364 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99900 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00011 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46818 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46756 * 120.00378 * 21 19 17 24 24 H 1.48502 * 109.47098 * 240.00335 * 21 19 17 25 25 C 1.46904 * 111.26716 * 296.74895 * 15 14 13 26 26 C 1.47076 * 120.88354 * 3.79907 * 12 10 9 27 27 C 1.38536 * 120.39839 * 0.02562 * 9 8 7 28 28 C 1.40191 * 119.39989 * 359.97438 * 27 9 8 29 29 H 1.09007 * 109.47167 * 90.00324 * 1 2 3 30 30 H 1.08997 * 109.47324 * 209.99982 * 1 2 3 31 31 H 1.09001 * 109.47776 * 330.00211 * 1 2 3 32 32 H 1.08005 * 120.05012 * 359.94844 * 3 2 1 33 33 H 1.07998 * 119.11116 * 179.71757 * 4 3 2 34 34 H 1.07998 * 119.94234 * 0.02562 * 7 6 5 35 35 H 1.07995 * 119.53140 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.62583 * 248.52771 * 13 12 10 37 37 H 1.09000 * 109.63034 * 9.10223 * 13 12 10 38 38 H 1.08995 * 109.65108 * 294.07592 * 14 13 12 39 39 H 1.09003 * 109.41723 * 173.94901 * 14 13 12 40 40 H 1.08997 * 109.47174 * 54.29850 * 16 15 14 41 41 H 1.09008 * 109.46721 * 174.29721 * 16 15 14 42 42 H 0.97003 * 120.00307 * 179.97438 * 20 19 17 43 43 H 1.08993 * 109.49530 * 303.14785 * 25 15 14 44 44 H 1.09001 * 109.51463 * 183.07619 * 25 15 14 45 45 H 1.09004 * 109.62704 * 350.89451 * 26 12 10 46 46 H 1.08996 * 109.63099 * 111.47447 * 26 12 10 47 47 H 1.07998 * 120.30334 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6015 1.1473 0.0005 5 7 4.2722 0.0204 0.0016 6 6 3.6479 -1.1611 0.0016 7 6 4.3795 -2.3637 0.0022 8 6 3.7304 -3.5554 0.0017 9 6 2.3252 -3.6130 0.0001 10 6 1.6440 -4.9244 -0.0010 11 8 0.7582 -5.1497 0.8005 12 7 2.0048 -5.8705 -0.8904 13 6 1.2892 -7.1536 -0.9597 14 6 0.8859 -7.4021 -2.4219 15 7 2.0778 -7.3094 -3.2756 16 6 1.7702 -7.7120 -4.6545 17 6 1.4130 -9.1757 -4.6826 18 1 1.4140 -9.7495 -3.7677 19 6 1.0840 -9.7822 -5.8764 20 7 1.0823 -9.0834 -6.9904 21 14 0.6405 -11.5965 -5.9112 22 1 0.7164 -12.1510 -4.5357 23 1 -0.7397 -11.7586 -6.4345 24 1 1.5919 -12.3218 -6.7910 25 6 2.6566 -5.9597 -3.2379 26 6 3.1286 -5.6497 -1.8133 27 6 1.5758 -2.4478 -0.0015 28 6 2.2308 -1.2083 -0.0011 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3635 0.8900 0.5138 32 1 1.6848 2.1164 -0.0008 33 1 4.1435 2.0814 -0.0041 34 1 5.4592 -2.3379 0.0030 35 1 4.3009 -4.4723 0.0025 36 1 1.9417 -7.9558 -0.6152 37 1 0.3972 -7.1095 -0.3349 38 1 0.1565 -6.6544 -2.7331 39 1 0.4494 -8.3967 -2.5134 40 1 0.9295 -7.1256 -5.0252 41 1 2.6412 -7.5382 -5.2865 42 1 0.8512 -9.5101 -7.8303 43 1 1.9026 -5.2321 -3.5377 44 1 3.5043 -5.9079 -3.9212 45 1 3.4532 -4.6109 -1.7531 46 1 3.9544 -6.3102 -1.5493 47 1 0.4968 -2.4939 -0.0032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:29 Heat of formation + Delta-G solvation = 33.519091 kcal Electronic energy + Delta-G solvation = -28773.340204 eV Core-core repulsion = 24921.025929 eV Total energy + Delta-G solvation = -3852.314275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.34918 -40.04824 -37.70862 -36.93733 -35.04326 -34.47269 -32.46178 -31.50012 -30.73208 -30.43370 -28.50431 -28.03595 -25.76983 -24.74620 -24.01843 -23.11042 -22.19553 -21.40058 -20.90650 -19.33839 -18.49155 -17.55556 -16.96242 -16.41629 -16.28570 -15.75074 -15.28056 -14.88468 -14.81724 -14.59099 -14.51273 -14.41700 -14.20713 -13.80100 -13.63652 -13.58355 -13.44710 -13.15776 -12.84511 -12.78826 -12.40195 -12.14222 -12.08817 -11.80376 -11.62431 -11.31309 -11.19557 -10.89207 -10.78664 -10.64721 -10.59528 -10.48631 -9.96661 -9.87755 -9.78218 -9.30079 -9.04593 -8.61332 -8.50972 -8.44610 -7.37826 -6.08986 -4.10871 -0.02838 0.39515 1.61260 2.26933 2.79644 3.08748 3.27550 3.35353 3.39717 3.76082 3.94642 4.14076 4.26846 4.30243 4.37158 4.42585 4.71946 4.72794 4.76196 4.90074 5.01161 5.10964 5.15621 5.19604 5.26008 5.33723 5.34360 5.43487 5.54652 5.57133 5.61978 5.66453 5.70939 5.76033 5.87644 5.95531 5.95961 6.05140 6.16831 6.18082 6.34796 6.44627 6.47993 6.65797 7.17891 7.23811 7.42884 7.58170 7.71503 7.97104 8.07603 8.11620 8.43870 8.96688 9.53952 11.01881 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019866 B = 0.002343 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.074900 B =11948.214809 C =12128.135772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.014 4.014 3 C -0.186 4.186 4 C 0.141 3.859 5 N -0.481 5.481 6 C 0.143 3.857 7 C -0.096 4.096 8 C -0.076 4.076 9 C -0.118 4.118 10 C 0.557 3.443 11 O -0.541 6.541 12 N -0.598 5.598 13 C 0.115 3.885 14 C 0.051 3.949 15 N -0.535 5.535 16 C 0.194 3.806 17 C -0.509 4.509 18 H 0.065 0.935 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.040 3.960 26 C 0.103 3.897 27 C -0.042 4.042 28 C -0.107 4.107 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.098 0.902 40 H -0.009 1.009 41 H 0.032 0.968 42 H 0.261 0.739 43 H 0.027 0.973 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 20.142 14.385 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.022 4.022 3 C -0.206 4.206 4 C -0.031 4.031 5 N -0.189 5.189 6 C 0.021 3.979 7 C -0.115 4.115 8 C -0.096 4.096 9 C -0.121 4.121 10 C 0.345 3.655 11 O -0.420 6.420 12 N -0.330 5.330 13 C -0.007 4.007 14 C -0.078 4.078 15 N -0.261 5.261 16 C 0.069 3.931 17 C -0.548 4.548 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.090 4.090 26 C -0.020 4.020 27 C -0.061 4.061 28 C -0.109 4.109 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.117 0.883 40 H 0.009 0.991 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.292 19.540 14.781 24.874 hybrid contribution -1.650 -0.331 -0.700 1.822 sum 2.643 19.210 14.080 23.964 Atomic orbital electron populations 1.20951 0.89763 1.03949 1.03543 1.20247 0.96807 0.92020 0.93082 1.21764 0.95637 0.98777 1.04399 1.22981 0.91511 0.96479 0.92169 1.68066 1.39880 0.97698 1.13303 1.18970 0.89499 0.92597 0.96821 1.20685 1.00625 0.89638 1.00510 1.21031 0.92783 0.98792 0.96971 1.19924 0.94132 0.93696 1.04331 1.18264 0.82718 0.83626 0.80921 1.90778 1.31806 1.80539 1.38847 1.48176 1.33367 1.16418 1.35049 1.22018 0.97245 0.83445 0.97994 1.22430 0.92062 1.02521 0.90769 1.62100 1.28692 1.21196 1.14068 1.19731 0.95559 0.96009 0.81812 1.21173 1.45507 0.94241 0.93851 0.91711 1.24996 0.95648 0.98417 0.95532 1.69962 1.49054 1.36161 0.98544 0.86438 0.77925 0.84874 0.78177 1.19596 1.21108 1.20981 1.22396 0.99785 0.91676 0.95095 1.22238 0.88707 1.01589 0.89440 1.21298 1.00198 0.89754 0.94877 1.18628 0.94123 0.93825 1.04369 0.89800 0.90404 0.90407 0.84399 0.82272 0.83977 0.84282 0.90581 0.89279 0.95688 0.88347 0.99114 0.95008 0.92909 0.95511 0.89926 0.89480 0.90225 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 9.59 36.01 0.35 -0.47 16 2 C -0.01 -0.12 5.92 -104.22 -0.62 -0.74 16 3 C -0.19 -1.37 9.72 -39.78 -0.39 -1.76 16 4 C 0.14 1.16 11.14 -17.46 -0.19 0.96 16 5 N -0.48 -5.33 10.33 -10.92 -0.11 -5.44 16 6 C 0.14 1.65 6.61 -84.77 -0.56 1.09 16 7 C -0.10 -1.00 9.95 -39.54 -0.39 -1.39 16 8 C -0.08 -0.80 7.26 -39.59 -0.29 -1.09 16 9 C -0.12 -1.49 5.02 -104.99 -0.53 -2.01 16 10 C 0.56 8.44 7.23 -12.36 -0.09 8.35 16 11 O -0.54 -9.77 16.49 5.31 0.09 -9.68 16 12 N -0.60 -8.91 3.00 -173.32 -0.52 -9.44 16 13 C 0.11 1.83 6.62 -3.36 -0.02 1.81 16 14 C 0.05 0.96 5.47 -3.46 -0.02 0.94 16 15 N -0.54 -10.89 4.62 -235.47 -1.09 -11.98 16 16 C 0.19 4.85 4.72 -4.98 -0.02 4.83 16 17 C -0.51 -13.80 8.41 -34.44 -0.29 -14.09 16 18 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 26 C 0.10 1.38 5.40 -3.60 -0.02 1.36 16 27 C -0.04 -0.49 9.00 -38.74 -0.35 -0.84 16 28 C -0.11 -1.19 5.74 -106.82 -0.61 -1.81 16 29 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.08 0.53 6.52 -51.93 -0.34 0.19 16 31 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 33 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.14 1.24 6.97 -52.49 -0.37 0.87 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.41 7.08 -51.93 -0.37 1.05 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 40 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 41 H 0.03 0.85 7.97 -51.92 -0.41 0.43 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 1.32 7.99 -51.93 -0.41 0.91 16 45 H 0.09 0.99 4.68 -51.93 -0.24 0.75 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.14 1.53 6.44 -52.49 -0.34 1.19 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -33.00 378.33 -10.94 -43.94 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.56 Total: -1.07 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -4.16 Total: -2.76 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.98 Total: -52.29 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.00 -10.94 -43.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.459 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds