Wall clock time and date at job start Tue Mar 31 2020 22:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36614 * 120.91861 * 2 1 4 4 C 1.39275 * 119.90330 * 179.97438 * 3 2 1 5 5 N 1.31142 * 121.77409 * 359.97438 * 4 3 2 6 6 C 1.33628 * 121.39141 * 0.02562 * 5 4 3 7 7 C 1.40767 * 120.83617 * 179.97438 * 6 5 4 8 8 C 1.35699 * 120.10775 * 180.02562 * 7 6 5 9 9 C 1.40635 * 120.92671 * 0.02562 * 8 7 6 10 10 C 1.47772 * 119.79942 * 179.97438 * 9 8 7 11 11 O 1.21561 * 119.99491 * 130.33982 * 10 9 8 12 12 N 1.34776 * 119.99972 * 310.34002 * 10 9 8 13 13 C 1.47081 * 120.87898 * 183.51644 * 12 10 9 14 14 C 1.53697 * 108.27417 * 128.75569 * 13 12 10 15 15 N 1.46896 * 109.25498 * 54.08692 * 14 13 12 16 16 C 1.46902 * 110.99707 * 172.60604 * 15 14 13 17 17 C 1.50695 * 109.47030 * 294.29525 * 16 15 14 18 18 H 1.07997 * 120.00364 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99900 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00011 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46818 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46756 * 120.00378 * 21 19 17 24 24 H 1.48502 * 109.47098 * 240.00335 * 21 19 17 25 25 C 1.46904 * 111.26716 * 296.74895 * 15 14 13 26 26 C 1.47076 * 120.88354 * 3.79907 * 12 10 9 27 27 C 1.38536 * 120.39839 * 0.02562 * 9 8 7 28 28 C 1.40191 * 119.39989 * 359.97438 * 27 9 8 29 29 H 1.09007 * 109.47167 * 90.00324 * 1 2 3 30 30 H 1.08997 * 109.47324 * 209.99982 * 1 2 3 31 31 H 1.09001 * 109.47776 * 330.00211 * 1 2 3 32 32 H 1.08005 * 120.05012 * 359.94844 * 3 2 1 33 33 H 1.07998 * 119.11116 * 179.71757 * 4 3 2 34 34 H 1.07998 * 119.94234 * 0.02562 * 7 6 5 35 35 H 1.07995 * 119.53140 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.62583 * 248.52771 * 13 12 10 37 37 H 1.09000 * 109.63034 * 9.10223 * 13 12 10 38 38 H 1.08995 * 109.65108 * 294.07592 * 14 13 12 39 39 H 1.09003 * 109.41723 * 173.94901 * 14 13 12 40 40 H 1.08997 * 109.47174 * 54.29850 * 16 15 14 41 41 H 1.09008 * 109.46721 * 174.29721 * 16 15 14 42 42 H 0.97003 * 120.00307 * 179.97438 * 20 19 17 43 43 H 1.08993 * 109.49530 * 303.14785 * 25 15 14 44 44 H 1.09001 * 109.51463 * 183.07619 * 25 15 14 45 45 H 1.09004 * 109.62704 * 350.89451 * 26 12 10 46 46 H 1.08996 * 109.63099 * 111.47447 * 26 12 10 47 47 H 1.07998 * 120.30334 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6015 1.1473 0.0005 5 7 4.2722 0.0204 0.0016 6 6 3.6479 -1.1611 0.0016 7 6 4.3795 -2.3637 0.0022 8 6 3.7304 -3.5554 0.0017 9 6 2.3252 -3.6130 0.0001 10 6 1.6440 -4.9244 -0.0010 11 8 0.7582 -5.1497 0.8005 12 7 2.0048 -5.8705 -0.8904 13 6 1.2892 -7.1536 -0.9597 14 6 0.8859 -7.4021 -2.4219 15 7 2.0778 -7.3094 -3.2756 16 6 1.7702 -7.7120 -4.6545 17 6 1.4130 -9.1757 -4.6826 18 1 1.4140 -9.7495 -3.7677 19 6 1.0840 -9.7822 -5.8764 20 7 1.0823 -9.0834 -6.9904 21 14 0.6405 -11.5965 -5.9112 22 1 0.7164 -12.1510 -4.5357 23 1 -0.7397 -11.7586 -6.4345 24 1 1.5919 -12.3218 -6.7910 25 6 2.6566 -5.9597 -3.2379 26 6 3.1286 -5.6497 -1.8133 27 6 1.5758 -2.4478 -0.0015 28 6 2.2308 -1.2083 -0.0011 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3635 0.8900 0.5138 32 1 1.6848 2.1164 -0.0008 33 1 4.1435 2.0814 -0.0041 34 1 5.4592 -2.3379 0.0030 35 1 4.3009 -4.4723 0.0025 36 1 1.9417 -7.9558 -0.6152 37 1 0.3972 -7.1095 -0.3349 38 1 0.1565 -6.6544 -2.7331 39 1 0.4494 -8.3967 -2.5134 40 1 0.9295 -7.1256 -5.0252 41 1 2.6412 -7.5382 -5.2865 42 1 0.8512 -9.5101 -7.8303 43 1 1.9026 -5.2321 -3.5377 44 1 3.5043 -5.9079 -3.9212 45 1 3.4532 -4.6109 -1.7531 46 1 3.9544 -6.3102 -1.5493 47 1 0.4968 -2.4939 -0.0032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602202451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:28 Heat of formation + Delta-G solvation = 12.769351 kcal Electronic energy + Delta-G solvation = -28774.239980 eV Core-core repulsion = 24921.025929 eV Total energy + Delta-G solvation = -3853.214051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.16871 -41.16314 -39.10154 -37.83965 -36.06706 -35.67878 -34.41845 -32.60674 -31.57125 -31.46316 -30.02424 -28.82936 -27.39293 -25.80581 -24.88639 -24.33109 -23.85087 -22.38090 -22.05221 -20.53725 -19.41535 -18.61585 -18.37526 -17.83736 -17.31123 -16.75865 -16.69347 -16.33670 -16.02713 -15.60409 -15.54462 -15.50304 -15.33252 -15.17500 -14.98214 -14.50622 -14.26471 -14.03884 -14.00032 -13.82815 -13.63053 -13.44873 -13.10608 -12.86290 -12.78424 -12.72158 -12.60648 -12.42370 -12.36076 -12.27393 -12.18648 -11.77121 -11.35260 -11.19797 -11.03526 -10.63420 -10.51997 -9.91707 -9.78782 -9.28794 -9.09481 -8.21780 -6.31542 -0.79221 -0.35395 0.84136 1.33914 1.41487 1.42496 1.55621 1.72073 2.03510 2.39936 3.00234 3.10578 3.17855 3.22424 3.34415 3.46416 3.63985 3.76596 3.86339 3.97969 3.99678 4.01005 4.17657 4.22435 4.28716 4.38534 4.43396 4.49342 4.53932 4.67676 4.68399 4.74022 4.79060 4.85068 4.87055 4.90798 4.97283 5.00091 5.10830 5.14478 5.15867 5.20107 5.31133 5.38707 5.49102 5.63245 5.74901 6.01382 6.15162 6.30391 6.54930 6.84283 6.88438 6.91876 7.38405 8.89646 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019866 B = 0.002343 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.074900 B =11948.214809 C =12128.135772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.025 4.025 3 C -0.178 4.178 4 C 0.142 3.858 5 N -0.508 5.508 6 C 0.125 3.875 7 C -0.096 4.096 8 C -0.076 4.076 9 C -0.137 4.137 10 C 0.561 3.439 11 O -0.576 6.576 12 N -0.600 5.600 13 C 0.126 3.874 14 C 0.056 3.944 15 N -0.537 5.537 16 C 0.209 3.791 17 C -0.521 4.521 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.261 1.261 23 H -0.281 1.281 24 H -0.279 1.279 25 C 0.037 3.963 26 C 0.114 3.886 27 C -0.044 4.044 28 C -0.125 4.125 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.174 0.826 33 H 0.194 0.806 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.010 0.990 39 H 0.083 0.917 40 H -0.042 1.042 41 H 0.011 0.989 42 H 0.264 0.736 43 H 0.016 0.984 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.098 0.902 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 21.517 15.586 26.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.033 4.033 3 C -0.197 4.197 4 C -0.030 4.030 5 N -0.218 5.218 6 C 0.004 3.996 7 C -0.114 4.114 8 C -0.096 4.096 9 C -0.140 4.140 10 C 0.350 3.650 11 O -0.456 6.456 12 N -0.332 5.332 13 C 0.004 3.996 14 C -0.073 4.073 15 N -0.262 5.262 16 C 0.083 3.917 17 C -0.560 4.560 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.185 1.185 23 H -0.207 1.207 24 H -0.204 1.204 25 C -0.092 4.092 26 C -0.008 4.008 27 C -0.064 4.064 28 C -0.127 4.127 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.191 0.809 33 H 0.211 0.789 34 H 0.177 0.823 35 H 0.174 0.826 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.028 0.972 39 H 0.101 0.899 40 H -0.024 1.024 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.034 0.966 44 H 0.108 0.892 45 H 0.130 0.870 46 H 0.116 0.884 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.170 20.931 15.998 26.847 hybrid contribution -1.927 -0.533 -1.068 2.267 sum 3.243 20.399 14.930 25.486 Atomic orbital electron populations 1.21000 0.88350 1.04668 1.04052 1.20591 0.98002 0.91820 0.92925 1.22170 0.95454 0.99681 1.02403 1.23669 0.92365 0.96918 0.89998 1.68120 1.40582 0.98215 1.14836 1.19262 0.89885 0.93392 0.97089 1.20899 1.01440 0.89256 0.99803 1.21112 0.91801 0.99678 0.97015 1.19798 0.95090 0.92333 1.06747 1.18619 0.82077 0.84192 0.80101 1.90751 1.33426 1.81215 1.40242 1.48223 1.33601 1.16035 1.35304 1.21816 0.97812 0.84553 0.95462 1.22362 0.91283 1.01204 0.92416 1.62028 1.29053 1.23689 1.11390 1.19378 0.93194 0.95037 0.84135 1.21488 1.45275 0.95195 0.94016 0.91515 1.25904 0.95470 1.03152 0.95121 1.70086 1.50050 1.38203 0.99214 0.85343 0.77610 0.79143 0.78588 1.18524 1.20717 1.20438 1.22529 0.99477 0.89293 0.97883 1.22291 0.88328 1.03621 0.86590 1.21380 1.00265 0.90118 0.94608 1.18805 0.94413 0.94333 1.05136 0.89300 0.91276 0.88125 0.80864 0.78948 0.82316 0.82573 0.89420 0.89215 0.97152 0.89872 1.02437 0.97115 0.92708 0.96607 0.89186 0.86958 0.88355 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.59 71.24 0.68 -0.73 16 2 C -0.03 -0.41 5.92 -19.60 -0.12 -0.52 16 3 C -0.18 -2.08 9.72 22.14 0.22 -1.86 16 4 C 0.14 1.93 11.14 85.05 0.95 2.88 16 5 N -0.51 -10.34 10.33 -188.46 -1.95 -12.29 16 6 C 0.12 2.74 6.61 40.37 0.27 3.01 16 7 C -0.10 -1.85 9.95 22.30 0.22 -1.63 16 8 C -0.08 -1.51 7.26 22.27 0.16 -1.34 16 9 C -0.14 -3.39 5.02 -20.10 -0.10 -3.49 16 10 C 0.56 16.88 7.23 86.77 0.63 17.50 16 11 O -0.58 -21.00 16.49 -3.91 -0.06 -21.06 16 12 N -0.60 -17.53 3.00 -820.54 -2.46 -20.00 16 13 C 0.13 3.99 6.62 86.50 0.57 4.57 16 14 C 0.06 2.17 5.47 86.54 0.47 2.65 16 15 N -0.54 -22.25 4.62 -898.88 -4.15 -26.40 16 16 C 0.21 10.86 4.72 85.55 0.40 11.27 16 17 C -0.52 -28.82 8.41 25.60 0.22 -28.60 16 18 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 19 C 0.00 0.09 5.46 84.66 0.46 0.55 16 20 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 21 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 25 C 0.04 1.24 5.62 86.38 0.49 1.73 16 26 C 0.11 2.88 5.40 86.35 0.47 3.35 16 27 C -0.04 -1.04 9.00 22.82 0.21 -0.83 16 28 C -0.12 -2.67 5.74 -21.29 -0.12 -2.79 16 29 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 0.91 6.52 -2.39 -0.02 0.89 16 31 H 0.10 0.66 8.10 -2.39 -0.02 0.64 16 32 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 33 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.16 2.44 6.97 -2.91 -0.02 2.42 16 36 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.09 2.86 7.08 -2.39 -0.02 2.85 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.08 3.43 6.67 -2.39 -0.02 3.41 16 40 H -0.04 -2.43 8.12 -2.39 -0.02 -2.44 16 41 H 0.01 0.60 7.97 -2.38 -0.02 0.58 16 42 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.09 2.87 7.99 -2.39 -0.02 2.85 16 45 H 0.11 2.35 4.68 -2.38 -0.01 2.34 16 46 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.14 3.12 6.44 -2.91 -0.02 3.10 16 Total: -1.00 -73.30 378.33 0.74 -72.56 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.99 Total: 11.19 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.07 Total: 5.70 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -8.28 Total: -114.07 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.06 Total: -21.06 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -73.30 0.74 -72.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.326 kcal (2) G-P(sol) polarization free energy of solvation -73.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds