Wall clock time and date at job start Tue Mar 31 2020 22:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39233 * 119.15930 * 2 1 4 4 C 1.36626 * 119.90770 * 179.97438 * 3 2 1 5 5 C 1.40800 * 118.16171 * 359.97438 * 4 3 2 6 6 C 1.40478 * 121.27403 * 180.02562 * 5 4 3 7 7 C 1.36309 * 120.08764 * 180.02562 * 6 5 4 8 8 C 1.38909 * 121.06030 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.72118 * 359.97438 * 8 7 6 10 10 C 1.47437 * 120.32950 * 180.02562 * 9 8 7 11 11 O 1.21596 * 119.99990 * 233.49106 * 10 9 8 12 12 N 1.34779 * 119.99809 * 53.49681 * 10 9 8 13 13 C 1.47075 * 120.88418 * 5.58828 * 12 10 9 14 14 C 1.53693 * 108.27869 * 128.75824 * 13 12 10 15 15 N 1.46902 * 109.25788 * 54.08334 * 14 13 12 16 16 C 1.46901 * 111.00016 * 172.61017 * 15 14 13 17 17 C 1.50702 * 109.46940 * 59.47189 * 16 15 14 18 18 H 1.07997 * 120.00422 * 355.06436 * 17 16 15 19 19 C 1.37877 * 119.99377 * 175.06605 * 17 16 15 20 20 N 1.31509 * 120.00548 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99586 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47307 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47283 * 119.99879 * 21 19 17 24 24 H 1.48501 * 109.47099 * 239.99924 * 21 19 17 25 25 C 1.46901 * 111.26746 * 296.75811 * 15 14 13 26 26 C 1.47085 * 120.88056 * 185.87366 * 12 10 9 27 27 C 1.41547 * 118.93469 * 0.02562 * 5 4 3 28 28 N 1.31241 * 119.15517 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46374 * 90.00153 * 1 2 3 30 30 H 1.08993 * 109.47318 * 210.00172 * 1 2 3 31 31 H 1.08998 * 109.46934 * 330.00463 * 1 2 3 32 32 H 1.07999 * 120.04408 * 0.24810 * 3 2 1 33 33 H 1.08008 * 120.92425 * 179.97438 * 4 3 2 34 34 H 1.08005 * 119.95123 * 359.97438 * 6 5 4 35 35 H 1.08002 * 119.47256 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.64067 * 180.02562 * 8 7 6 37 37 H 1.09007 * 109.63087 * 248.52790 * 13 12 10 38 38 H 1.09002 * 109.62655 * 9.10388 * 13 12 10 39 39 H 1.09000 * 109.64633 * 294.07916 * 14 13 12 40 40 H 1.08997 * 109.42482 * 173.94919 * 14 13 12 41 41 H 1.08997 * 109.46991 * 179.46967 * 16 15 14 42 42 H 1.08997 * 109.47205 * 299.46804 * 16 15 14 43 43 H 0.97000 * 120.00437 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.49297 * 303.14315 * 25 15 14 45 45 H 1.08997 * 109.51378 * 183.07576 * 25 15 14 46 46 H 1.09001 * 109.62335 * 350.88993 * 26 12 10 47 47 H 1.08991 * 109.63165 * 111.47253 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2159 0.0000 4 6 3.5515 1.2337 0.0005 5 6 4.2322 0.0012 0.0016 6 6 5.6358 -0.0568 0.0028 7 6 6.2699 -1.2634 0.0033 8 6 5.5500 -2.4513 0.0032 9 6 4.1629 -2.4394 0.0032 10 6 3.4075 -3.7055 0.0037 11 8 2.5579 -3.9069 -0.8426 12 7 3.6584 -4.6395 0.9424 13 6 4.5924 -4.3691 2.0458 14 6 3.8905 -4.7174 3.3679 15 7 3.3906 -6.0972 3.3022 16 6 2.8680 -6.5305 4.6049 17 6 1.7445 -5.6178 5.0242 18 1 1.5007 -4.7517 4.4268 19 6 1.0279 -5.8884 6.1705 20 7 1.3243 -6.9432 6.8978 21 14 -0.3643 -4.7567 6.6906 22 1 -0.4949 -3.6495 5.7098 23 1 -1.6339 -5.5251 6.7423 24 1 -0.0705 -4.1954 8.0337 25 6 2.3749 -6.2465 2.2514 26 6 3.0102 -5.9587 0.8869 27 6 3.4789 -1.1972 0.0016 28 7 2.1464 -1.1461 0.0005 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6324 2.1436 0.0040 33 1 4.0944 2.1674 0.0001 34 1 6.2132 0.8560 0.0024 35 1 7.3494 -1.2963 0.0037 36 1 6.0759 -3.3946 0.0041 37 1 5.4853 -4.9834 1.9288 38 1 4.8674 -3.3143 2.0425 39 1 3.0558 -4.0356 3.5304 40 1 4.6002 -4.6265 4.1901 41 1 2.4960 -7.5519 4.5256 42 1 3.6649 -6.4907 5.3475 43 1 0.8199 -7.1339 7.7041 44 1 1.5613 -5.5434 2.4295 45 1 1.9852 -7.2644 2.2637 46 1 2.2385 -5.9553 0.1171 47 1 3.7537 -6.7228 0.6607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602206127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:27 Heat of formation + Delta-G solvation = 32.757903 kcal Electronic energy + Delta-G solvation = -29601.455690 eV Core-core repulsion = 25749.108408 eV Total energy + Delta-G solvation = -3852.347282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20886 -39.62145 -37.55752 -37.15613 -34.37378 -33.66971 -32.32676 -32.15433 -31.01470 -30.04539 -28.20900 -27.88200 -25.44783 -24.12499 -23.74431 -22.93478 -22.65679 -21.98677 -20.37567 -18.86715 -18.39738 -17.44585 -16.63618 -16.42225 -16.15221 -15.61391 -15.04261 -14.94189 -14.77038 -14.65323 -14.35740 -14.08061 -13.95017 -13.72784 -13.33815 -13.24311 -13.14941 -13.07335 -12.56149 -12.36017 -12.22156 -12.15964 -11.82871 -11.57207 -11.50396 -11.13710 -11.02615 -10.97130 -10.69331 -10.65506 -10.55792 -10.22228 -9.92549 -9.79337 -9.61992 -9.35477 -8.87498 -8.46260 -8.42741 -8.29901 -7.23691 -6.05313 -4.14285 0.04385 0.61082 1.65354 2.60175 2.94370 3.25236 3.28144 3.33572 3.38463 3.91755 3.99784 4.28943 4.39589 4.45254 4.55721 4.61346 4.75416 4.86630 4.94418 5.06269 5.10262 5.25198 5.30411 5.39114 5.44244 5.48166 5.53824 5.65890 5.68411 5.72877 5.76845 5.82784 5.90226 5.93104 6.01261 6.06006 6.11678 6.16117 6.30815 6.44379 6.58185 6.64756 6.78017 6.84062 7.22078 7.49398 7.64431 7.86893 7.88096 7.99095 8.20076 8.26326 8.42094 8.96002 9.53202 10.99826 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.003687 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.362595 B = 7592.930363 C = 8779.735860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.163 3.837 3 C -0.172 4.172 4 C -0.055 4.055 5 C -0.114 4.114 6 C -0.078 4.078 7 C -0.123 4.123 8 C -0.066 4.066 9 C -0.095 4.095 10 C 0.567 3.433 11 O -0.525 6.525 12 N -0.602 5.602 13 C 0.108 3.892 14 C 0.050 3.950 15 N -0.540 5.540 16 C 0.187 3.813 17 C -0.550 4.550 18 H 0.056 0.944 19 C 0.066 3.934 20 N -0.890 5.890 21 Si 0.887 3.113 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.283 1.283 25 C 0.051 3.949 26 C 0.117 3.883 27 C 0.166 3.834 28 N -0.458 5.458 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.262 0.738 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.074 16.044 -14.566 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.011 3.989 3 C -0.192 4.192 4 C -0.081 4.081 5 C -0.116 4.116 6 C -0.097 4.097 7 C -0.141 4.141 8 C -0.087 4.087 9 C -0.099 4.099 10 C 0.354 3.646 11 O -0.401 6.401 12 N -0.335 5.335 13 C -0.015 4.015 14 C -0.079 4.079 15 N -0.264 5.264 16 C 0.062 3.938 17 C -0.589 4.589 18 H 0.075 0.925 19 C -0.136 4.136 20 N -0.529 5.529 21 Si 0.715 3.285 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.209 1.209 25 C -0.079 4.079 26 C -0.005 4.005 27 C 0.043 3.957 28 N -0.166 5.166 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.106 0.894 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.562 14.644 -14.968 22.623 hybrid contribution -0.985 1.965 0.836 2.352 sum 7.577 16.609 -14.132 23.086 Atomic orbital electron populations 1.20810 0.88503 1.03930 1.03375 1.21622 0.97456 0.87968 0.91886 1.21750 0.95088 0.99311 1.03031 1.21447 0.94459 0.97015 0.95160 1.18778 0.94834 0.93849 1.04143 1.21095 0.92466 0.98668 0.97441 1.20809 1.00548 0.91817 1.00965 1.21400 0.92097 0.99405 0.95764 1.19822 0.93542 0.92562 1.03996 1.17879 0.82383 0.82610 0.81681 1.90764 1.32135 1.78675 1.38552 1.48084 1.45112 1.14580 1.25763 1.22164 0.92231 1.00620 0.86505 1.22304 0.99011 0.91764 0.94855 1.62499 1.35857 1.19870 1.08186 1.19767 0.93925 0.96178 0.83923 1.21789 1.17126 1.11084 1.08893 0.92549 1.24938 0.97164 0.95120 0.96398 1.69943 1.40748 1.26480 1.15712 0.86617 0.82397 0.81031 0.78496 1.19885 1.20848 1.20910 1.22230 0.94003 1.01638 0.89982 1.21840 0.97458 0.82378 0.98801 1.18504 0.89229 0.91368 0.96556 1.67939 1.08072 1.28600 1.12019 0.89999 0.89924 0.90479 0.84413 0.84159 0.84957 0.84774 0.84495 0.90973 0.90444 0.93882 0.90427 0.94617 0.95248 0.92840 0.93892 0.90356 0.89425 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.15 36.01 0.37 -0.78 16 2 C 0.16 2.14 6.78 -82.48 -0.56 1.58 16 3 C -0.17 -1.71 9.64 -39.79 -0.38 -2.09 16 4 C -0.06 -0.52 9.89 -39.20 -0.39 -0.91 16 5 C -0.11 -1.34 5.74 -106.82 -0.61 -1.96 16 6 C -0.08 -0.69 9.75 -39.43 -0.38 -1.08 16 7 C -0.12 -1.08 9.93 -40.03 -0.40 -1.48 16 8 C -0.07 -0.74 7.78 -39.16 -0.30 -1.05 16 9 C -0.10 -1.45 4.65 -104.61 -0.49 -1.94 16 10 C 0.57 10.22 6.85 -12.51 -0.09 10.14 16 11 O -0.52 -11.15 16.20 5.28 0.09 -11.06 16 12 N -0.60 -10.24 3.00 -173.44 -0.52 -10.76 16 13 C 0.11 1.65 5.68 -3.37 -0.02 1.63 16 14 C 0.05 0.96 5.17 -3.46 -0.02 0.94 16 15 N -0.54 -11.39 4.83 -235.47 -1.14 -12.53 16 16 C 0.19 4.76 5.11 -4.97 -0.03 4.73 16 17 C -0.55 -15.16 7.76 -34.44 -0.27 -15.43 16 18 H 0.06 1.59 5.88 -52.49 -0.31 1.28 16 19 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 20 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 21 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.05 1.02 5.25 -3.70 -0.02 1.00 16 26 C 0.12 2.02 6.61 -3.60 -0.02 2.00 16 27 C 0.17 2.58 6.60 -84.58 -0.56 2.02 16 28 N -0.46 -7.71 9.43 -7.01 -0.07 -7.78 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.14 1.29 7.70 -52.49 -0.40 0.89 16 37 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 38 H 0.08 1.07 5.53 -51.93 -0.29 0.78 16 39 H 0.04 0.95 6.62 -51.93 -0.34 0.60 16 40 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 41 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.04 0.98 7.11 -51.93 -0.37 0.61 16 45 H 0.08 1.54 8.06 -51.93 -0.42 1.12 16 46 H 0.09 1.54 7.04 -51.93 -0.37 1.18 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -34.90 379.84 -11.16 -46.06 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.70 Total: -0.12 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -4.27 Total: -0.89 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.99 Total: -56.42 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.90 -11.16 -46.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.818 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds