Wall clock time and date at job start Tue Mar 31 2020 22:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39316 * 119.05799 * 2 1 4 4 C 1.38854 * 119.58046 * 179.72220 * 3 2 1 5 5 C 1.47907 * 121.11336 * 179.97438 * 4 3 2 6 6 O 1.21541 * 119.99996 * 233.61346 * 5 4 3 7 7 N 1.34771 * 120.00037 * 53.61540 * 5 4 3 8 8 C 1.47082 * 120.88175 * 5.53666 * 7 5 4 9 9 C 1.53694 * 108.27733 * 128.75232 * 8 7 5 10 10 N 1.46896 * 109.25804 * 54.08502 * 9 8 7 11 11 C 1.46892 * 111.00293 * 172.60559 * 10 9 8 12 12 C 1.50697 * 109.47296 * 59.46953 * 11 10 9 13 13 H 1.08002 * 119.99916 * 355.06513 * 12 11 10 14 14 C 1.37880 * 120.00551 * 175.06470 * 12 11 10 15 15 N 1.31516 * 119.99756 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00365 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47561 * 89.99842 * 16 14 12 18 18 H 1.48506 * 109.47276 * 210.00130 * 16 14 12 19 19 H 1.48500 * 109.47021 * 329.99846 * 16 14 12 20 20 C 1.46903 * 111.26719 * 296.75767 * 10 9 8 21 21 C 1.47082 * 120.88552 * 185.81262 * 7 5 4 22 22 C 1.41826 * 117.77804 * 0.02562 * 4 3 2 23 23 C 1.40096 * 121.37474 * 180.02562 * 22 4 3 24 24 C 1.36251 * 119.64196 * 179.97438 * 23 22 4 25 25 C 1.39346 * 120.83597 * 0.02562 * 24 23 22 26 26 C 1.36059 * 121.05031 * 359.97438 * 25 24 23 27 27 C 1.40704 * 119.74167 * 0.02562 * 26 25 24 28 28 N 1.30959 * 119.06053 * 179.73266 * 2 1 3 29 29 H 1.08994 * 109.47049 * 89.99667 * 1 2 3 30 30 H 1.08997 * 109.46745 * 209.99693 * 1 2 3 31 31 H 1.09005 * 109.46791 * 329.99881 * 1 2 3 32 32 H 1.08001 * 120.21381 * 359.74659 * 3 2 1 33 33 H 1.08994 * 109.63070 * 248.52374 * 8 7 5 34 34 H 1.09007 * 109.62615 * 9.10239 * 8 7 5 35 35 H 1.08998 * 109.64932 * 294.07957 * 9 8 7 36 36 H 1.09005 * 109.42468 * 173.95068 * 9 8 7 37 37 H 1.09002 * 109.47668 * 179.46781 * 11 10 9 38 38 H 1.09004 * 109.47449 * 299.47040 * 11 10 9 39 39 H 0.96997 * 120.00052 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.49129 * 303.13771 * 20 10 9 41 41 H 1.09000 * 109.49240 * 183.06335 * 20 10 9 42 42 H 1.09000 * 109.62547 * 350.90179 * 21 7 5 43 43 H 1.09000 * 109.62326 * 111.47678 * 21 7 5 44 44 H 1.08000 * 120.17940 * 359.97438 * 23 22 4 45 45 H 1.08003 * 119.58126 * 179.97438 * 24 23 22 46 46 H 1.08007 * 119.47347 * 179.97438 * 25 24 23 47 47 H 1.08001 * 120.13111 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5722 1.2305 0.0059 5 6 4.3249 2.5037 0.0055 6 8 5.1752 2.7067 -0.8388 7 7 4.0678 3.4387 0.9414 8 6 3.1313 3.1672 2.0425 9 6 3.8280 3.5205 3.3661 10 7 4.3234 4.9018 3.2992 11 6 4.8404 5.3395 4.6026 12 6 5.9656 4.4314 5.0273 13 1 6.2142 3.5650 4.4324 14 6 6.6779 4.7067 6.1753 15 7 6.3756 5.7620 6.8996 16 14 8.0731 3.5815 6.7013 17 1 9.3446 4.0536 6.0965 18 1 8.1923 3.5994 8.1814 19 1 7.7916 2.1970 6.2441 20 6 5.3418 5.0525 2.2513 21 6 4.7118 4.7599 0.8855 22 6 4.2445 -0.0183 0.0111 23 6 5.6435 -0.0934 0.0177 24 6 6.2528 -1.3120 0.0231 25 6 5.5022 -2.4860 0.0216 26 6 4.1421 -2.4493 0.0153 27 6 3.4773 -1.2092 0.0095 28 7 2.1431 -1.1447 0.0053 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6318 2.1462 -0.0041 33 1 2.2369 3.7782 1.9215 34 1 2.8599 2.1115 2.0405 35 1 4.6645 2.8418 3.5325 36 1 3.1160 3.4288 4.1864 37 1 5.2093 6.3620 4.5226 38 1 4.0413 5.2984 5.3429 39 1 6.8764 5.9555 7.7074 40 1 6.1572 4.3526 2.4333 41 1 5.7276 6.0719 2.2630 42 1 5.4858 4.7577 0.1181 43 1 3.9662 5.5211 0.6554 44 1 6.2357 0.8098 0.0185 45 1 7.3314 -1.3688 0.0278 46 1 6.0081 -3.4403 0.0256 47 1 3.5749 -3.3684 0.0146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:31 Heat of formation + Delta-G solvation = 31.487005 kcal Electronic energy + Delta-G solvation = -29577.051657 eV Core-core repulsion = 25724.649265 eV Total energy + Delta-G solvation = -3852.402392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35415 -39.70931 -37.62714 -37.51872 -34.61789 -33.69099 -32.36251 -32.22726 -30.90749 -30.14344 -28.30568 -27.97228 -25.72333 -24.49493 -23.61429 -22.98450 -22.71284 -22.05926 -20.43102 -18.90138 -18.29617 -17.61727 -17.23608 -16.36978 -16.15125 -15.50954 -15.24873 -14.92224 -14.82861 -14.71760 -14.49807 -14.31176 -13.95094 -13.81533 -13.64038 -13.37587 -13.26872 -13.17473 -12.72463 -12.47656 -12.32226 -11.94178 -11.75760 -11.57110 -11.55202 -11.22579 -11.17994 -11.07365 -10.76929 -10.70462 -10.66346 -10.36297 -10.22134 -9.96721 -9.73190 -9.51285 -8.87434 -8.60052 -8.51497 -8.39374 -7.35067 -6.11759 -4.21286 0.02322 0.59066 1.62411 2.53749 2.70667 2.98510 3.21816 3.29197 3.31948 3.88141 3.91344 4.15455 4.33688 4.44036 4.49434 4.64096 4.80568 4.90311 4.91313 5.11397 5.13481 5.17817 5.20960 5.27674 5.32985 5.37993 5.44486 5.55239 5.59243 5.62245 5.69502 5.76908 5.85732 5.86510 5.90004 5.98837 6.14726 6.29019 6.30633 6.32384 6.51509 6.59769 6.63622 6.64499 7.12376 7.36390 7.41580 7.69132 7.79250 7.88287 8.03897 8.09617 8.17900 8.88154 9.46491 10.93531 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.003503 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.967154 B = 7990.543882 C = 8932.536630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.157 3.843 3 C -0.141 4.141 4 C -0.051 4.051 5 C 0.559 3.441 6 O -0.534 6.534 7 N -0.594 5.594 8 C 0.105 3.895 9 C 0.050 3.950 10 N -0.540 5.540 11 C 0.188 3.812 12 C -0.553 4.553 13 H 0.055 0.945 14 C 0.067 3.933 15 N -0.889 5.889 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.275 1.275 20 C 0.050 3.950 21 C 0.115 3.885 22 C -0.075 4.075 23 C -0.085 4.085 24 C -0.117 4.117 25 C -0.096 4.096 26 C -0.098 4.098 27 C 0.135 3.865 28 N -0.467 5.467 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.030 0.970 39 H 0.263 0.737 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -11.992 -14.241 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.005 3.995 3 C -0.161 4.161 4 C -0.062 4.062 5 C 0.346 3.654 6 O -0.412 6.412 7 N -0.326 5.326 8 C -0.018 4.018 9 C -0.080 4.080 10 N -0.264 5.264 11 C 0.063 3.937 12 C -0.592 4.592 13 H 0.074 0.926 14 C -0.136 4.136 15 N -0.527 5.527 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.079 4.079 21 C -0.007 4.007 22 C -0.078 4.078 23 C -0.104 4.104 24 C -0.135 4.135 25 C -0.115 4.115 26 C -0.117 4.117 27 C 0.013 3.987 28 N -0.177 5.177 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.162 0.838 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.425 -12.281 -14.619 21.292 hybrid contribution 2.062 -0.273 0.784 2.223 sum -7.363 -12.554 -13.835 20.080 Atomic orbital electron populations 1.20797 0.88052 1.04032 1.03434 1.21396 0.97276 0.87554 0.93290 1.22195 0.93097 0.99991 1.00846 1.20386 0.94116 0.93344 0.98326 1.18105 0.82596 0.82916 0.81822 1.90784 1.32659 1.79182 1.38525 1.48148 1.44477 1.14353 1.25599 1.22257 0.92281 1.00852 0.86414 1.22315 0.99167 0.91790 0.94700 1.62504 1.35901 1.19584 1.08413 1.19766 0.94022 0.96187 0.83754 1.21721 1.17285 1.11217 1.09012 0.92644 1.24940 0.97152 0.95109 0.96365 1.69931 1.40710 1.26355 1.15722 0.86665 0.82723 0.81201 0.77885 1.20550 1.21014 1.19990 1.22241 0.93984 1.01872 0.89826 1.21940 0.97724 0.82017 0.99049 1.18593 0.94911 0.92231 1.02049 1.21161 0.92890 0.99219 0.97084 1.20999 1.00636 0.92088 0.99762 1.20953 0.93727 0.98768 0.98087 1.20770 0.94189 0.96065 1.00677 1.18769 0.88793 0.92729 0.98406 1.67629 1.08657 1.28804 1.12573 0.90035 0.90049 0.90139 0.83780 0.90531 0.90341 0.93765 0.90138 0.94559 0.95163 0.92702 0.93856 0.90097 0.89232 0.90830 0.84617 0.85242 0.85110 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.14 36.01 0.37 -0.40 16 2 C 0.16 1.74 6.78 -82.56 -0.56 1.18 16 3 C -0.14 -1.61 7.55 -38.95 -0.29 -1.90 16 4 C -0.05 -0.72 4.66 -104.34 -0.49 -1.20 16 5 C 0.56 8.85 6.55 -12.30 -0.08 8.77 16 6 O -0.53 -9.79 15.24 5.33 0.08 -9.71 16 7 N -0.59 -9.02 3.00 -173.28 -0.52 -9.54 16 8 C 0.10 1.46 5.76 -3.36 -0.02 1.45 16 9 C 0.05 0.89 5.17 -3.47 -0.02 0.87 16 10 N -0.54 -10.71 4.83 -235.48 -1.14 -11.85 16 11 C 0.19 4.59 5.11 -4.98 -0.03 4.56 16 12 C -0.55 -14.70 7.76 -34.44 -0.27 -14.97 16 13 H 0.06 1.49 5.88 -52.49 -0.31 1.18 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 15 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 16 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.05 0.92 5.25 -3.70 -0.02 0.90 16 21 C 0.11 1.77 6.61 -3.61 -0.02 1.74 16 22 C -0.08 -1.09 5.76 -106.52 -0.61 -1.70 16 23 C -0.08 -1.19 9.25 -39.60 -0.37 -1.56 16 24 C -0.12 -1.33 9.96 -39.88 -0.40 -1.73 16 25 C -0.10 -0.96 9.94 -39.95 -0.40 -1.35 16 26 C -0.10 -1.10 9.98 -39.43 -0.39 -1.50 16 27 C 0.13 1.82 6.61 -84.87 -0.56 1.26 16 28 N -0.47 -6.05 10.19 -7.25 -0.07 -6.12 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.14 1.31 7.77 -52.49 -0.41 0.90 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.01 5.54 -51.93 -0.29 0.72 16 35 H 0.04 0.90 6.62 -51.93 -0.34 0.56 16 36 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 37 H 0.04 0.95 8.07 -51.93 -0.42 0.54 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 40 H 0.04 0.91 7.11 -51.93 -0.37 0.54 16 41 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 42 H 0.09 1.39 7.04 -51.93 -0.37 1.02 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.14 2.06 6.49 -52.49 -0.34 1.72 16 45 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 46 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 47 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -31.64 377.64 -11.12 -42.76 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.62 Total: 1.19 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -4.26 Total: -3.82 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.99 Total: -52.24 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.64 -11.12 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.244 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds