Wall clock time and date at job start Tue Mar 31 2020 22:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39316 * 119.05799 * 2 1 4 4 C 1.38854 * 119.58046 * 179.72220 * 3 2 1 5 5 C 1.47907 * 121.11336 * 179.97438 * 4 3 2 6 6 O 1.21541 * 119.99996 * 233.61346 * 5 4 3 7 7 N 1.34771 * 120.00037 * 53.61540 * 5 4 3 8 8 C 1.47082 * 120.88175 * 5.53666 * 7 5 4 9 9 C 1.53694 * 108.27733 * 128.75232 * 8 7 5 10 10 N 1.46896 * 109.25804 * 54.08502 * 9 8 7 11 11 C 1.46892 * 111.00293 * 172.60559 * 10 9 8 12 12 C 1.50697 * 109.47296 * 59.46953 * 11 10 9 13 13 H 1.08002 * 119.99916 * 355.06513 * 12 11 10 14 14 C 1.37880 * 120.00551 * 175.06470 * 12 11 10 15 15 N 1.31516 * 119.99756 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00365 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47561 * 89.99842 * 16 14 12 18 18 H 1.48506 * 109.47276 * 210.00130 * 16 14 12 19 19 H 1.48500 * 109.47021 * 329.99846 * 16 14 12 20 20 C 1.46903 * 111.26719 * 296.75767 * 10 9 8 21 21 C 1.47082 * 120.88552 * 185.81262 * 7 5 4 22 22 C 1.41826 * 117.77804 * 0.02562 * 4 3 2 23 23 C 1.40096 * 121.37474 * 180.02562 * 22 4 3 24 24 C 1.36251 * 119.64196 * 179.97438 * 23 22 4 25 25 C 1.39346 * 120.83597 * 0.02562 * 24 23 22 26 26 C 1.36059 * 121.05031 * 359.97438 * 25 24 23 27 27 C 1.40704 * 119.74167 * 0.02562 * 26 25 24 28 28 N 1.30959 * 119.06053 * 179.73266 * 2 1 3 29 29 H 1.08994 * 109.47049 * 89.99667 * 1 2 3 30 30 H 1.08997 * 109.46745 * 209.99693 * 1 2 3 31 31 H 1.09005 * 109.46791 * 329.99881 * 1 2 3 32 32 H 1.08001 * 120.21381 * 359.74659 * 3 2 1 33 33 H 1.08994 * 109.63070 * 248.52374 * 8 7 5 34 34 H 1.09007 * 109.62615 * 9.10239 * 8 7 5 35 35 H 1.08998 * 109.64932 * 294.07957 * 9 8 7 36 36 H 1.09005 * 109.42468 * 173.95068 * 9 8 7 37 37 H 1.09002 * 109.47668 * 179.46781 * 11 10 9 38 38 H 1.09004 * 109.47449 * 299.47040 * 11 10 9 39 39 H 0.96997 * 120.00052 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.49129 * 303.13771 * 20 10 9 41 41 H 1.09000 * 109.49240 * 183.06335 * 20 10 9 42 42 H 1.09000 * 109.62547 * 350.90179 * 21 7 5 43 43 H 1.09000 * 109.62326 * 111.47678 * 21 7 5 44 44 H 1.08000 * 120.17940 * 359.97438 * 23 22 4 45 45 H 1.08003 * 119.58126 * 179.97438 * 24 23 22 46 46 H 1.08007 * 119.47347 * 179.97438 * 25 24 23 47 47 H 1.08001 * 120.13111 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5722 1.2305 0.0059 5 6 4.3249 2.5037 0.0055 6 8 5.1752 2.7067 -0.8388 7 7 4.0678 3.4387 0.9414 8 6 3.1313 3.1672 2.0425 9 6 3.8280 3.5205 3.3661 10 7 4.3234 4.9018 3.2992 11 6 4.8404 5.3395 4.6026 12 6 5.9656 4.4314 5.0273 13 1 6.2142 3.5650 4.4324 14 6 6.6779 4.7067 6.1753 15 7 6.3756 5.7620 6.8996 16 14 8.0731 3.5815 6.7013 17 1 9.3446 4.0536 6.0965 18 1 8.1923 3.5994 8.1814 19 1 7.7916 2.1970 6.2441 20 6 5.3418 5.0525 2.2513 21 6 4.7118 4.7599 0.8855 22 6 4.2445 -0.0183 0.0111 23 6 5.6435 -0.0934 0.0177 24 6 6.2528 -1.3120 0.0231 25 6 5.5022 -2.4860 0.0216 26 6 4.1421 -2.4493 0.0153 27 6 3.4773 -1.2092 0.0095 28 7 2.1431 -1.1447 0.0053 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6318 2.1462 -0.0041 33 1 2.2369 3.7782 1.9215 34 1 2.8599 2.1115 2.0405 35 1 4.6645 2.8418 3.5325 36 1 3.1160 3.4288 4.1864 37 1 5.2093 6.3620 4.5226 38 1 4.0413 5.2984 5.3429 39 1 6.8764 5.9555 7.7074 40 1 6.1572 4.3526 2.4333 41 1 5.7276 6.0719 2.2630 42 1 5.4858 4.7577 0.1181 43 1 3.9662 5.5211 0.6554 44 1 6.2357 0.8098 0.0185 45 1 7.3314 -1.3688 0.0278 46 1 6.0081 -3.4403 0.0256 47 1 3.5749 -3.3684 0.0146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:30 Heat of formation + Delta-G solvation = 11.648629 kcal Electronic energy + Delta-G solvation = -29577.911914 eV Core-core repulsion = 25724.649265 eV Total energy + Delta-G solvation = -3853.262649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.34365 -40.91129 -39.08006 -38.40624 -36.15527 -34.80375 -34.24214 -33.00897 -32.19850 -31.15448 -29.93543 -28.75130 -27.41097 -25.70427 -24.81905 -24.33201 -23.67041 -23.46974 -21.84306 -20.19139 -19.20419 -18.64197 -18.59580 -18.08835 -17.36910 -16.79264 -16.53570 -16.34899 -16.06089 -15.74711 -15.65480 -15.57823 -15.33049 -15.12109 -14.89860 -14.55042 -14.30255 -13.96368 -13.92462 -13.79352 -13.62516 -13.07309 -13.03040 -12.97877 -12.61741 -12.61216 -12.53853 -12.41005 -12.33032 -12.27132 -12.05193 -11.87397 -11.74990 -11.65178 -11.32554 -10.65061 -10.53861 -9.91388 -9.74031 -9.32879 -9.11997 -8.21345 -6.39825 -0.91415 -0.29537 0.64925 1.30808 1.32565 1.37923 1.41734 1.72768 1.89602 2.31946 2.96031 3.04237 3.05600 3.14614 3.24983 3.56967 3.57741 3.77540 3.89527 3.98889 4.04939 4.11540 4.19709 4.29020 4.32038 4.36077 4.41039 4.45914 4.55287 4.66474 4.69132 4.81839 4.84167 4.87274 4.95267 4.98548 5.01960 5.10442 5.15167 5.17519 5.28789 5.29627 5.34129 5.41095 5.49075 5.69205 5.79809 5.94371 6.08881 6.22325 6.38904 6.79652 6.79759 6.81871 7.31693 8.81273 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.003503 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.967154 B = 7990.543882 C = 8932.536630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.153 3.847 3 C -0.126 4.126 4 C -0.078 4.078 5 C 0.562 3.438 6 O -0.566 6.566 7 N -0.596 5.596 8 C 0.118 3.882 9 C 0.050 3.950 10 N -0.531 5.531 11 C 0.201 3.799 12 C -0.559 4.559 13 H 0.047 0.953 14 C 0.019 3.981 15 N -0.920 5.920 16 Si 0.948 3.052 17 H -0.275 1.275 18 H -0.277 1.277 19 H -0.274 1.274 20 C 0.054 3.946 21 C 0.125 3.875 22 C -0.095 4.095 23 C -0.119 4.119 24 C -0.111 4.111 25 C -0.091 4.091 26 C -0.102 4.102 27 C 0.114 3.886 28 N -0.479 5.479 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.172 0.828 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.012 0.988 36 H 0.084 0.916 37 H 0.013 0.987 38 H 0.013 0.987 39 H 0.266 0.734 40 H 0.011 0.989 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.149 0.851 46 H 0.169 0.831 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.740 -13.792 -15.014 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 C -0.146 4.146 4 C -0.089 4.089 5 C 0.351 3.649 6 O -0.446 6.446 7 N -0.327 5.327 8 C -0.004 4.004 9 C -0.080 4.080 10 N -0.254 5.254 11 C 0.074 3.926 12 C -0.598 4.598 13 H 0.066 0.934 14 C -0.181 4.181 15 N -0.560 5.560 16 Si 0.774 3.226 17 H -0.201 1.201 18 H -0.202 1.202 19 H -0.198 1.198 20 C -0.075 4.075 21 C 0.003 3.997 22 C -0.098 4.098 23 C -0.138 4.138 24 C -0.129 4.129 25 C -0.110 4.110 26 C -0.120 4.120 27 C -0.007 4.007 28 N -0.189 5.189 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.189 0.811 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.030 0.970 36 H 0.103 0.897 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.129 0.871 45 H 0.167 0.833 46 H 0.186 0.814 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.031 -14.091 -15.397 23.608 hybrid contribution 2.535 0.252 1.004 2.738 sum -8.496 -13.839 -14.393 21.700 Atomic orbital electron populations 1.20931 0.85043 1.05309 1.04723 1.22056 0.99097 0.86868 0.91906 1.22529 0.91975 1.01441 0.98664 1.20326 0.95249 0.92271 1.01056 1.18374 0.82054 0.83288 0.81232 1.90753 1.34132 1.79820 1.39933 1.48207 1.44574 1.14145 1.25799 1.22248 0.92214 1.02441 0.83512 1.22368 0.98390 0.89639 0.97564 1.62449 1.35530 1.20941 1.06496 1.19436 0.92808 0.94686 0.85636 1.21934 1.17841 1.11126 1.08897 0.93447 1.25688 0.99482 0.96453 0.96521 1.70028 1.41930 1.27780 1.16233 0.85706 0.79852 0.79295 0.77758 1.20102 1.20164 1.19840 1.22221 0.93082 1.00991 0.91203 1.21812 0.98344 0.83008 0.96529 1.18775 0.95185 0.92950 1.02880 1.21113 0.93114 0.99468 1.00084 1.21330 1.01886 0.91730 0.97913 1.21327 0.93418 0.99650 0.96596 1.21125 0.94903 0.96066 0.99904 1.19104 0.89275 0.93188 0.99142 1.67719 1.08357 1.29760 1.13021 0.88551 0.89869 0.87789 0.81062 0.87362 0.88780 0.96968 0.89718 0.96931 0.96918 0.92466 0.97074 0.90185 0.89433 0.88270 0.87076 0.83286 0.81394 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.14 71.24 0.72 -0.40 16 2 C 0.15 3.02 6.78 42.95 0.29 3.31 16 3 C -0.13 -2.60 7.55 22.68 0.17 -2.43 16 4 C -0.08 -2.17 4.66 -19.68 -0.09 -2.27 16 5 C 0.56 17.86 6.55 86.81 0.57 18.43 16 6 O -0.57 -21.43 15.24 -3.84 -0.06 -21.49 16 7 N -0.60 -17.67 3.00 -820.41 -2.46 -20.13 16 8 C 0.12 3.09 5.76 86.50 0.50 3.59 16 9 C 0.05 1.77 5.17 86.54 0.45 2.22 16 10 N -0.53 -21.29 4.83 -898.92 -4.34 -25.63 16 11 C 0.20 10.11 5.11 85.56 0.44 10.55 16 12 C -0.56 -30.56 7.76 25.60 0.20 -30.36 16 13 H 0.05 2.63 5.88 -2.91 -0.02 2.61 16 14 C 0.02 1.04 5.46 84.66 0.46 1.50 16 15 N -0.92 -53.64 13.29 21.45 0.28 -53.35 16 16 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 C 0.05 2.05 5.25 86.38 0.45 2.50 16 21 C 0.13 3.80 6.61 86.35 0.57 4.37 16 22 C -0.10 -2.78 5.76 -21.09 -0.12 -2.90 16 23 C -0.12 -3.46 9.25 22.26 0.21 -3.26 16 24 C -0.11 -2.46 9.96 22.07 0.22 -2.24 16 25 C -0.09 -1.63 9.94 22.03 0.22 -1.41 16 26 C -0.10 -2.11 9.98 22.37 0.22 -1.88 16 27 C 0.11 2.99 6.61 40.33 0.27 3.26 16 28 N -0.48 -11.60 10.19 -176.84 -1.80 -13.40 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.67 8.07 -2.38 -0.02 0.65 16 32 H 0.17 2.47 7.77 -2.91 -0.02 2.45 16 33 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.09 2.23 5.54 -2.38 -0.01 2.21 16 35 H 0.01 0.51 6.62 -2.39 -0.02 0.49 16 36 H 0.08 2.93 8.11 -2.38 -0.02 2.91 16 37 H 0.01 0.69 8.07 -2.39 -0.02 0.67 16 38 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.27 14.65 8.31 -92.71 -0.77 13.87 16 40 H 0.01 0.48 7.11 -2.39 -0.02 0.47 16 41 H 0.08 3.00 8.06 -2.39 -0.02 2.98 16 42 H 0.09 2.74 7.04 -2.39 -0.02 2.72 16 43 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.11 3.68 6.49 -2.91 -0.02 3.66 16 45 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 46 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 47 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -71.60 377.64 0.37 -71.22 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.98 Total: 14.20 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.74 Total: 2.60 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -8.32 Total: -112.52 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.06 Total: -21.49 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -71.60 0.37 -71.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.872 kcal (2) G-P(sol) polarization free energy of solvation -71.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds