Wall clock time and date at job start Tue Mar 31 2020 22:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30821 * 119.23628 * 2 1 4 4 C 1.33787 * 121.72007 * 180.02562 * 3 2 1 5 5 C 1.40539 * 120.81865 * 179.97438 * 4 3 2 6 6 C 1.36132 * 119.81063 * 180.02562 * 5 4 3 7 7 C 1.39341 * 121.09847 * 359.97311 * 6 5 4 8 8 C 1.36137 * 120.83419 * 359.97438 * 7 6 5 9 9 C 1.40548 * 119.62048 * 0.05158 * 8 7 6 10 10 C 1.40499 * 121.22927 * 179.97438 * 9 8 7 11 11 C 1.39046 * 117.96399 * 179.97438 * 10 9 8 12 12 C 1.47750 * 120.26821 * 179.97438 * 11 10 9 13 13 O 1.21561 * 120.00177 * 186.29065 * 12 11 10 14 14 N 1.34781 * 119.99984 * 6.29807 * 12 11 10 15 15 C 1.46501 * 120.00085 * 179.97438 * 14 12 11 16 16 C 1.53040 * 109.46077 * 275.06968 * 15 14 12 17 17 C 1.53189 * 109.31308 * 178.61696 * 16 15 14 18 18 N 1.46925 * 108.77875 * 54.62849 * 17 16 15 19 19 C 1.36939 * 120.63019 * 126.41341 * 18 17 16 20 20 H 1.07996 * 119.99830 * 332.17985 * 19 18 17 21 21 C 1.38809 * 119.99747 * 152.17096 * 19 18 17 22 22 N 1.31614 * 120.00663 * 343.38715 * 21 19 18 23 23 Si 1.86806 * 119.99647 * 163.38323 * 21 19 18 24 24 H 1.48500 * 109.47151 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47133 * 120.00492 * 23 21 19 26 26 H 1.48504 * 109.46994 * 240.00397 * 23 21 19 27 27 C 1.46929 * 118.73876 * 306.39552 * 18 17 16 28 28 C 1.53037 * 109.46230 * 154.99372 * 15 14 12 29 29 H 1.08995 * 109.46747 * 96.72207 * 1 2 3 30 30 H 1.08994 * 109.47138 * 216.72323 * 1 2 3 31 31 H 1.09004 * 109.46841 * 336.72785 * 1 2 3 32 32 H 1.08002 * 120.09217 * 0.03849 * 5 4 3 33 33 H 1.08003 * 119.45013 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.58378 * 180.02562 * 7 6 5 35 35 H 1.08006 * 120.18979 * 179.97438 * 8 7 6 36 36 H 1.08002 * 121.02003 * 359.95259 * 10 9 8 37 37 H 0.97000 * 119.99730 * 359.97438 * 14 12 11 38 38 H 1.09006 * 109.45882 * 35.02650 * 15 14 12 39 39 H 1.09010 * 109.49316 * 298.56201 * 16 15 14 40 40 H 1.09001 * 109.50141 * 58.65824 * 16 15 14 41 41 H 1.09000 * 109.58588 * 294.84017 * 17 16 15 42 42 H 1.09002 * 109.70228 * 174.48966 * 17 16 15 43 43 H 0.96999 * 120.00636 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.58396 * 293.81469 * 27 18 17 45 45 H 1.09000 * 109.69967 * 173.46898 * 27 18 17 46 46 H 1.09006 * 109.50059 * 301.34316 * 28 15 14 47 47 H 1.09002 * 109.49324 * 61.43820 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4826 1.1995 -0.0005 5 6 4.1496 2.4365 -0.0010 6 6 5.5105 2.4716 -0.0021 7 6 6.2607 1.2974 -0.0021 8 6 5.6513 0.0800 -0.0005 9 6 4.2478 0.0058 0.0000 10 6 3.5838 -1.2325 0.0011 11 6 2.1934 -1.2267 0.0021 12 6 1.4434 -2.4997 0.0027 13 8 0.2332 -2.4923 -0.1117 14 7 2.1010 -3.6693 0.1303 15 6 1.3573 -4.9315 0.1315 16 6 0.8551 -5.2261 1.5468 17 6 0.0488 -6.5286 1.5374 18 7 0.8779 -7.5939 0.9573 19 6 1.0803 -8.7670 1.6340 20 1 1.0434 -8.7812 2.7132 21 6 1.3327 -9.9380 0.9327 22 7 1.0610 -10.0067 -0.3533 23 14 2.0584 -11.4166 1.8142 24 1 2.2700 -11.0845 3.2460 25 1 1.1236 -12.5653 1.7058 26 1 3.3579 -11.7755 1.1914 27 6 1.4853 -7.3766 -0.3628 28 6 2.2755 -6.0647 -0.3321 29 1 -0.3632 -0.1203 -1.0206 30 1 -0.3633 -0.8237 0.6145 31 1 -0.3633 0.9441 0.4061 32 1 3.5841 3.3567 -0.0004 33 1 6.0171 3.4254 -0.0021 34 1 7.3391 1.3537 -0.0025 35 1 6.2430 -0.8235 -0.0009 36 1 4.1365 -2.1603 0.0008 37 1 3.0667 -3.6752 0.2214 38 1 0.5072 -4.8527 -0.5463 39 1 1.7058 -5.3297 2.2204 40 1 0.2199 -4.4074 1.8852 41 1 -0.8507 -6.3972 0.9359 42 1 -0.2292 -6.7960 2.5568 43 1 1.2377 -10.8249 -0.8434 44 1 0.7029 -7.3145 -1.1192 45 1 2.1567 -8.2023 -0.5987 46 1 2.6514 -5.8429 -1.3310 47 1 3.1127 -6.1604 0.3593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609328748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:24 Heat of formation + Delta-G solvation = 39.148957 kcal Electronic energy + Delta-G solvation = -28631.836368 eV Core-core repulsion = 24779.766222 eV Total energy + Delta-G solvation = -3852.070145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33614 -39.71742 -37.77515 -37.01526 -34.73944 -33.86803 -32.19549 -32.05279 -30.71560 -30.05970 -29.29282 -27.94567 -25.49476 -24.56685 -22.89754 -22.53021 -22.35709 -21.96580 -20.62344 -19.54197 -18.53441 -17.78724 -17.06908 -16.71591 -15.84656 -15.73360 -15.42448 -14.90279 -14.86994 -14.64771 -14.36258 -14.03358 -13.74591 -13.68186 -13.57190 -13.16180 -13.13673 -13.00801 -12.66786 -12.42498 -12.22982 -12.07455 -11.79333 -11.60060 -11.50033 -11.14628 -10.91766 -10.83776 -10.76523 -10.52781 -10.30697 -10.07326 -10.04655 -9.83100 -9.68478 -9.40110 -9.07255 -8.75956 -8.60118 -8.49512 -6.72411 -5.82652 -3.24998 -0.11366 0.34994 1.52283 2.32878 3.09308 3.16032 3.34553 3.42696 3.44755 3.78781 3.91033 4.17116 4.28980 4.36689 4.43477 4.46585 4.73248 4.79636 4.89431 5.08368 5.28539 5.30450 5.37475 5.39507 5.45172 5.53275 5.55978 5.59930 5.71357 5.79563 5.81557 5.94874 6.01947 6.02795 6.04810 6.19123 6.25197 6.32637 6.46195 6.50116 6.51050 6.54782 6.75499 6.83861 6.95384 7.27597 7.50330 7.60836 7.66627 7.76881 8.22877 8.41164 9.17515 9.80594 10.37145 11.26227 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020119 B = 0.002313 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.414817 B =12101.423882 C =13056.157448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 N -0.484 5.484 4 C 0.149 3.851 5 C -0.102 4.102 6 C -0.091 4.091 7 C -0.125 4.125 8 C -0.085 4.085 9 C -0.119 4.119 10 C -0.016 4.016 11 C -0.182 4.182 12 C 0.558 3.442 13 O -0.525 6.525 14 N -0.717 5.717 15 C 0.151 3.849 16 C -0.139 4.139 17 C 0.147 3.853 18 N -0.593 5.593 19 C -0.251 4.251 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.174 3.826 28 C -0.147 4.147 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.393 0.607 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.021 0.979 42 H 0.056 0.944 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.915 23.363 -0.504 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.061 3.939 3 N -0.193 5.193 4 C 0.027 3.973 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.143 4.143 8 C -0.103 4.103 9 C -0.121 4.121 10 C -0.042 4.042 11 C -0.187 4.187 12 C 0.344 3.656 13 O -0.403 6.403 14 N -0.367 5.367 15 C 0.048 3.952 16 C -0.179 4.179 17 C 0.020 3.980 18 N -0.316 5.316 19 C -0.380 4.380 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.047 3.953 28 C -0.187 4.187 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.162 0.838 37 H 0.227 0.773 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.656 24.027 -0.682 25.548 hybrid contribution 1.550 -1.550 0.374 2.223 sum 10.206 22.478 -0.308 24.688 Atomic orbital electron populations 1.21131 0.87152 1.04021 1.04558 1.21637 0.97768 0.86177 0.88361 1.67922 1.08155 1.28179 1.15021 1.19026 0.89221 0.93017 0.95992 1.20827 0.94219 0.96417 1.00550 1.20981 0.93693 0.98862 0.97603 1.20929 1.00481 0.92271 1.00665 1.21070 0.92442 0.98796 0.98033 1.18771 0.94982 0.93611 1.04778 1.22022 0.93292 0.97710 0.91179 1.20950 0.94060 0.95679 1.08057 1.17930 0.87298 0.83220 0.77127 1.90741 1.13314 1.86779 1.49500 1.46307 1.10685 1.06340 1.73342 1.21115 0.95129 0.80797 0.98136 1.22382 1.00517 0.99294 0.95732 1.20874 0.92156 0.87297 0.97630 1.44109 1.54524 1.14132 1.18820 1.19235 1.43383 0.85012 0.90413 0.91565 1.25055 1.01242 0.97270 0.96175 1.70022 1.50036 1.27013 1.07745 0.86225 0.78686 0.82774 0.79103 1.20268 1.21703 1.21575 1.20753 0.95296 0.92551 0.86672 1.22551 0.99097 0.97406 0.99653 0.89678 0.87489 0.91273 0.84564 0.85162 0.85312 0.84909 0.83760 0.77256 0.89679 0.92329 0.92602 0.96101 0.92502 0.93627 0.96061 0.88857 0.92697 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 8.82 36.01 0.32 -1.04 16 2 C 0.21 2.79 6.82 -82.14 -0.56 2.23 16 3 N -0.48 -6.30 10.20 -6.93 -0.07 -6.37 16 4 C 0.15 1.72 6.61 -84.79 -0.56 1.16 16 5 C -0.10 -0.92 9.97 -39.47 -0.39 -1.31 16 6 C -0.09 -0.62 9.94 -39.93 -0.40 -1.02 16 7 C -0.13 -0.83 9.96 -39.93 -0.40 -1.22 16 8 C -0.08 -0.65 9.77 -39.47 -0.39 -1.04 16 9 C -0.12 -1.22 5.74 -106.81 -0.61 -1.84 16 10 C -0.02 -0.16 9.38 -38.43 -0.36 -0.52 16 11 C -0.18 -2.27 5.89 -104.83 -0.62 -2.89 16 12 C 0.56 7.97 7.66 -12.37 -0.09 7.87 16 13 O -0.53 -8.88 12.97 5.31 0.07 -8.82 16 14 N -0.72 -9.61 5.03 -54.74 -0.28 -9.88 16 15 C 0.15 2.51 2.41 -67.89 -0.16 2.34 16 16 C -0.14 -2.45 5.65 -26.61 -0.15 -2.60 16 17 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 18 N -0.59 -14.50 3.00 -172.33 -0.52 -15.01 16 19 C -0.25 -6.74 9.59 -15.06 -0.14 -6.88 16 20 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 21 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 22 N -0.90 -25.71 11.15 55.49 0.62 -25.09 16 23 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 28 C -0.15 -2.58 5.55 -26.62 -0.15 -2.72 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 1.43 5.81 -51.93 -0.30 1.13 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 34 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 36 H 0.14 1.04 6.53 -52.49 -0.34 0.69 16 37 H 0.39 4.17 6.71 -40.82 -0.27 3.90 16 38 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 39 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.09 2.38 6.03 -51.93 -0.31 2.07 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -31.66 377.89 -10.97 -42.63 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.66 Total: 3.11 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -4.80 Total: -2.51 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.24 Total: -56.36 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.82 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.66 -10.97 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.777 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds