Wall clock time and date at job start Tue Mar 31 2020 22:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30821 * 119.23628 * 2 1 4 4 C 1.33787 * 121.72007 * 180.02562 * 3 2 1 5 5 C 1.40539 * 120.81865 * 179.97438 * 4 3 2 6 6 C 1.36132 * 119.81063 * 180.02562 * 5 4 3 7 7 C 1.39341 * 121.09847 * 359.97311 * 6 5 4 8 8 C 1.36137 * 120.83419 * 359.97438 * 7 6 5 9 9 C 1.40548 * 119.62048 * 0.05158 * 8 7 6 10 10 C 1.40499 * 121.22927 * 179.97438 * 9 8 7 11 11 C 1.39046 * 117.96399 * 179.97438 * 10 9 8 12 12 C 1.47750 * 120.26821 * 179.97438 * 11 10 9 13 13 O 1.21561 * 120.00177 * 186.29065 * 12 11 10 14 14 N 1.34781 * 119.99984 * 6.29807 * 12 11 10 15 15 C 1.46501 * 120.00085 * 179.97438 * 14 12 11 16 16 C 1.53040 * 109.46077 * 275.06968 * 15 14 12 17 17 C 1.53189 * 109.31308 * 178.61696 * 16 15 14 18 18 N 1.46925 * 108.77875 * 54.62849 * 17 16 15 19 19 C 1.36939 * 120.63019 * 126.41341 * 18 17 16 20 20 H 1.07996 * 119.99830 * 332.17985 * 19 18 17 21 21 C 1.38809 * 119.99747 * 152.17096 * 19 18 17 22 22 N 1.31614 * 120.00663 * 343.38715 * 21 19 18 23 23 Si 1.86806 * 119.99647 * 163.38323 * 21 19 18 24 24 H 1.48500 * 109.47151 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47133 * 120.00492 * 23 21 19 26 26 H 1.48504 * 109.46994 * 240.00397 * 23 21 19 27 27 C 1.46929 * 118.73876 * 306.39552 * 18 17 16 28 28 C 1.53037 * 109.46230 * 154.99372 * 15 14 12 29 29 H 1.08995 * 109.46747 * 96.72207 * 1 2 3 30 30 H 1.08994 * 109.47138 * 216.72323 * 1 2 3 31 31 H 1.09004 * 109.46841 * 336.72785 * 1 2 3 32 32 H 1.08002 * 120.09217 * 0.03849 * 5 4 3 33 33 H 1.08003 * 119.45013 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.58378 * 180.02562 * 7 6 5 35 35 H 1.08006 * 120.18979 * 179.97438 * 8 7 6 36 36 H 1.08002 * 121.02003 * 359.95259 * 10 9 8 37 37 H 0.97000 * 119.99730 * 359.97438 * 14 12 11 38 38 H 1.09006 * 109.45882 * 35.02650 * 15 14 12 39 39 H 1.09010 * 109.49316 * 298.56201 * 16 15 14 40 40 H 1.09001 * 109.50141 * 58.65824 * 16 15 14 41 41 H 1.09000 * 109.58588 * 294.84017 * 17 16 15 42 42 H 1.09002 * 109.70228 * 174.48966 * 17 16 15 43 43 H 0.96999 * 120.00636 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.58396 * 293.81469 * 27 18 17 45 45 H 1.09000 * 109.69967 * 173.46898 * 27 18 17 46 46 H 1.09006 * 109.50059 * 301.34316 * 28 15 14 47 47 H 1.09002 * 109.49324 * 61.43820 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4826 1.1995 -0.0005 5 6 4.1496 2.4365 -0.0010 6 6 5.5105 2.4716 -0.0021 7 6 6.2607 1.2974 -0.0021 8 6 5.6513 0.0800 -0.0005 9 6 4.2478 0.0058 0.0000 10 6 3.5838 -1.2325 0.0011 11 6 2.1934 -1.2267 0.0021 12 6 1.4434 -2.4997 0.0027 13 8 0.2332 -2.4923 -0.1117 14 7 2.1010 -3.6693 0.1303 15 6 1.3573 -4.9315 0.1315 16 6 0.8551 -5.2261 1.5468 17 6 0.0488 -6.5286 1.5374 18 7 0.8779 -7.5939 0.9573 19 6 1.0803 -8.7670 1.6340 20 1 1.0434 -8.7812 2.7132 21 6 1.3327 -9.9380 0.9327 22 7 1.0610 -10.0067 -0.3533 23 14 2.0584 -11.4166 1.8142 24 1 2.2700 -11.0845 3.2460 25 1 1.1236 -12.5653 1.7058 26 1 3.3579 -11.7755 1.1914 27 6 1.4853 -7.3766 -0.3628 28 6 2.2755 -6.0647 -0.3321 29 1 -0.3632 -0.1203 -1.0206 30 1 -0.3633 -0.8237 0.6145 31 1 -0.3633 0.9441 0.4061 32 1 3.5841 3.3567 -0.0004 33 1 6.0171 3.4254 -0.0021 34 1 7.3391 1.3537 -0.0025 35 1 6.2430 -0.8235 -0.0009 36 1 4.1365 -2.1603 0.0008 37 1 3.0667 -3.6752 0.2214 38 1 0.5072 -4.8527 -0.5463 39 1 1.7058 -5.3297 2.2204 40 1 0.2199 -4.4074 1.8852 41 1 -0.8507 -6.3972 0.9359 42 1 -0.2292 -6.7960 2.5568 43 1 1.2377 -10.8249 -0.8434 44 1 0.7029 -7.3145 -1.1192 45 1 2.1567 -8.2023 -0.5987 46 1 2.6514 -5.8429 -1.3310 47 1 3.1127 -6.1604 0.3593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609328748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:23 Heat of formation + Delta-G solvation = 20.605324 kcal Electronic energy + Delta-G solvation = -28632.640480 eV Core-core repulsion = 24779.766222 eV Total energy + Delta-G solvation = -3852.874258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16236 -40.80210 -39.09476 -37.99258 -36.14718 -34.86209 -33.80047 -32.84957 -31.96685 -31.48871 -30.67749 -28.79660 -27.04783 -25.70816 -23.99602 -23.84608 -23.50920 -22.99837 -21.79740 -21.07594 -19.52572 -18.87783 -18.35984 -17.85371 -17.03500 -16.68408 -16.62906 -16.42081 -15.73935 -15.53639 -15.41724 -15.37815 -15.28615 -14.89562 -14.68017 -14.38075 -14.31581 -14.11174 -13.95545 -13.87497 -13.29006 -13.10272 -12.98087 -12.70138 -12.62277 -12.50361 -12.41533 -12.34061 -12.21473 -11.99719 -11.86921 -11.62857 -11.53659 -11.34119 -10.99536 -10.56545 -10.47379 -10.11195 -9.71643 -9.26512 -8.70836 -7.87491 -5.33078 -0.83993 -0.41543 0.83155 1.47707 1.49983 1.51749 1.60403 2.01555 2.19780 2.52113 3.03233 3.13027 3.28358 3.43293 3.49785 3.60138 3.66866 3.79324 3.89123 4.02609 4.09674 4.22124 4.31620 4.33618 4.39815 4.46556 4.57315 4.65104 4.65782 4.73663 4.78522 4.84640 4.86115 4.92873 5.01343 5.05298 5.06440 5.15488 5.24986 5.30638 5.36307 5.44926 5.47897 5.48762 5.54075 5.65188 5.72704 5.86810 6.39216 6.48849 6.81991 7.14968 7.15825 7.84497 8.36811 9.19593 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020119 B = 0.002313 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.414817 B =12101.423882 C =13056.157448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.194 3.806 3 N -0.504 5.504 4 C 0.124 3.876 5 C -0.126 4.126 6 C -0.075 4.075 7 C -0.121 4.121 8 C -0.086 4.086 9 C -0.135 4.135 10 C 0.002 3.998 11 C -0.204 4.204 12 C 0.562 3.438 13 O -0.558 6.558 14 N -0.704 5.704 15 C 0.164 3.836 16 C -0.124 4.124 17 C 0.144 3.856 18 N -0.609 5.609 19 C -0.260 4.260 20 H 0.067 0.933 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.267 1.267 25 H -0.295 1.295 26 H -0.287 1.287 27 C 0.178 3.822 28 C -0.129 4.129 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.176 0.824 37 H 0.411 0.589 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.008 0.992 42 H 0.057 0.943 43 H 0.251 0.749 44 H -0.006 1.006 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.653 24.866 0.248 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.041 3.959 3 N -0.214 5.214 4 C 0.003 3.997 5 C -0.145 4.145 6 C -0.095 4.095 7 C -0.139 4.139 8 C -0.105 4.105 9 C -0.137 4.137 10 C -0.024 4.024 11 C -0.210 4.210 12 C 0.349 3.651 13 O -0.438 6.438 14 N -0.355 5.355 15 C 0.060 3.940 16 C -0.164 4.164 17 C 0.018 3.982 18 N -0.333 5.333 19 C -0.390 4.390 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.796 3.204 24 H -0.191 1.191 25 H -0.223 1.223 26 H -0.214 1.214 27 C 0.051 3.949 28 C -0.168 4.168 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.179 0.821 36 H 0.194 0.806 37 H 0.248 0.752 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.026 0.974 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.012 0.988 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.424 25.570 0.085 28.429 hybrid contribution 0.476 -1.863 0.134 1.928 sum 12.900 23.707 0.219 26.991 Atomic orbital electron populations 1.20997 0.87516 1.03676 1.03952 1.21680 0.97916 0.86785 0.89496 1.67884 1.09428 1.28193 1.15867 1.19489 0.88957 0.94713 0.96582 1.21020 0.95443 0.95791 1.02203 1.21423 0.92786 1.00681 0.94582 1.21402 1.02233 0.91576 0.98675 1.21440 0.91248 1.00638 0.97144 1.19027 0.96372 0.93042 1.05221 1.22364 0.92308 0.99119 0.88630 1.20696 0.95032 0.94160 1.11098 1.18180 0.86969 0.83800 0.76125 1.90732 1.14918 1.87256 1.50935 1.45946 1.11365 1.04900 1.73315 1.20701 0.94568 0.81937 0.96845 1.22178 1.00298 0.97288 0.96648 1.20964 0.92001 0.88134 0.97082 1.44370 1.55458 1.14331 1.19151 1.19544 1.42719 0.86048 0.90738 0.91496 1.25803 1.02016 0.99887 0.96884 1.70178 1.51389 1.27497 1.09135 0.85202 0.77527 0.79158 0.78499 1.19110 1.22254 1.21368 1.20579 0.94411 0.94429 0.85456 1.22267 0.98479 0.94594 1.01505 0.90188 0.89010 0.90563 0.84287 0.82027 0.81950 0.82073 0.80631 0.75197 0.91920 0.91487 0.92025 0.97378 0.92451 0.94027 0.98761 0.91691 0.90350 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.69 8.82 71.24 0.63 -2.06 16 2 C 0.19 5.19 6.82 43.28 0.30 5.48 16 3 N -0.50 -13.28 10.20 -175.85 -1.79 -15.08 16 4 C 0.12 2.74 6.61 40.29 0.27 3.00 16 5 C -0.13 -2.06 9.97 22.34 0.22 -1.84 16 6 C -0.08 -0.75 9.94 22.04 0.22 -0.53 16 7 C -0.12 -1.02 9.96 22.05 0.22 -0.80 16 8 C -0.09 -0.96 9.77 22.34 0.22 -0.74 16 9 C -0.13 -2.44 5.74 -21.28 -0.12 -2.56 16 10 C 0.00 0.03 9.38 23.02 0.22 0.25 16 11 C -0.20 -4.98 5.89 -20.00 -0.12 -5.10 16 12 C 0.56 15.78 7.66 86.76 0.66 16.44 16 13 O -0.56 -19.36 12.97 -3.91 -0.05 -19.41 16 14 N -0.70 -17.64 5.03 -445.36 -2.24 -19.88 16 15 C 0.16 5.30 2.41 45.02 0.11 5.41 16 16 C -0.12 -4.28 5.65 30.67 0.17 -4.10 16 17 C 0.14 6.13 6.52 86.36 0.56 6.69 16 18 N -0.61 -30.22 3.00 -699.11 -2.09 -32.32 16 19 C -0.26 -14.09 9.59 84.03 0.81 -13.29 16 20 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 21 C -0.05 -2.78 4.93 84.86 0.42 -2.36 16 22 N -0.94 -54.56 11.15 21.65 0.24 -54.32 16 23 Si 0.97 44.00 29.59 68.60 2.03 46.03 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 26 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 27 C 0.18 8.27 5.30 86.36 0.46 8.73 16 28 C -0.13 -4.35 5.55 30.67 0.17 -4.18 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.09 2.63 5.81 -2.39 -0.01 2.61 16 31 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.16 0.33 8.06 -2.91 -0.02 0.30 16 35 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.18 1.82 6.53 -2.91 -0.02 1.80 16 37 H 0.41 7.39 6.71 -92.71 -0.62 6.77 16 38 H 0.06 2.36 7.58 -2.38 -0.02 2.34 16 39 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 44 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.06 3.40 6.03 -2.39 -0.01 3.38 16 46 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 47 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -71.82 377.89 1.87 -69.95 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.37 Total: 16.59 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 5.41 Total: 8.44 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -5.89 Total: -121.59 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.05 Total: -19.41 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.82 1.87 -69.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.558 kcal (2) G-P(sol) polarization free energy of solvation -71.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds