Wall clock time and date at job start Tue Mar 31 2020 22:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39311 * 119.11337 * 2 1 4 4 C 1.36586 * 119.90250 * 179.97438 * 3 2 1 5 5 C 1.40892 * 118.15809 * 359.97438 * 4 3 2 6 6 C 1.40173 * 121.22396 * 179.97438 * 5 4 3 7 7 C 1.38551 * 119.40529 * 180.02562 * 6 5 4 8 8 C 1.47766 * 119.80328 * 179.97438 * 7 6 5 9 9 O 1.21565 * 120.00435 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99733 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99781 * 180.02562 * 10 8 7 12 12 C 1.53045 * 109.45982 * 275.02982 * 11 10 8 13 13 C 1.53189 * 109.31134 * 178.60228 * 12 11 10 14 14 N 1.46934 * 108.76266 * 54.65424 * 13 12 11 15 15 C 1.36942 * 120.62587 * 126.40500 * 14 13 12 16 16 H 1.08000 * 120.00446 * 332.60741 * 15 14 13 17 17 C 1.38814 * 119.99541 * 152.60329 * 15 14 13 18 18 N 1.31621 * 119.99416 * 159.34092 * 17 15 14 19 19 Si 1.86797 * 120.00279 * 339.34933 * 17 15 14 20 20 H 1.48502 * 109.47395 * 92.93872 * 19 17 15 21 21 H 1.48504 * 109.46969 * 212.93778 * 19 17 15 22 22 H 1.48502 * 109.47034 * 332.93731 * 19 17 15 23 23 C 1.46924 * 118.74070 * 306.38304 * 14 13 12 24 24 C 1.53041 * 109.45834 * 154.97724 * 11 10 8 25 25 C 1.40630 * 120.39011 * 359.97438 * 7 6 5 26 26 C 1.35701 * 120.92042 * 0.02562 * 25 7 6 27 27 C 1.40758 * 120.11405 * 0.02562 * 26 25 7 28 28 N 1.31120 * 119.11104 * 179.71843 * 2 1 3 29 29 H 1.09006 * 109.47076 * 90.00557 * 1 2 3 30 30 H 1.08998 * 109.47222 * 210.00366 * 1 2 3 31 31 H 1.08997 * 109.47211 * 330.00688 * 1 2 3 32 32 H 1.07993 * 120.04932 * 359.94896 * 3 2 1 33 33 H 1.07998 * 120.91906 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.29742 * 0.02562 * 6 5 4 35 35 H 0.97002 * 119.99804 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.45798 * 35.00182 * 11 10 8 37 37 H 1.08997 * 109.49375 * 298.56702 * 12 11 10 38 38 H 1.08998 * 109.49598 * 58.65961 * 12 11 10 39 39 H 1.09000 * 109.60005 * 294.87090 * 13 12 11 40 40 H 1.08999 * 109.70524 * 174.50448 * 13 12 11 41 41 H 0.97004 * 119.99855 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.58255 * 293.81989 * 23 14 13 43 43 H 1.09001 * 109.70052 * 173.46696 * 23 14 13 44 44 H 1.09002 * 109.49723 * 301.33621 * 24 11 10 45 45 H 1.08995 * 109.49612 * 61.42877 * 24 11 10 46 46 H 1.07991 * 119.53814 * 180.02562 * 25 7 6 47 47 H 1.07995 * 119.94109 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2171 0.0000 4 6 3.5506 1.2359 0.0005 5 6 4.2325 0.0030 0.0016 6 6 5.6331 -0.0527 0.0017 7 6 6.2649 -1.2858 0.0022 8 6 7.7409 -1.3547 0.0017 9 8 8.3973 -0.3315 0.0013 10 7 8.3596 -2.5522 0.0028 11 6 9.8231 -2.6205 0.0028 12 6 10.3383 -2.5192 -1.4347 13 6 11.8697 -2.5559 -1.4278 14 7 12.3103 -3.7615 -0.7126 15 6 13.1787 -4.6427 -1.2997 16 1 13.2110 -4.7335 -2.3754 17 6 14.0175 -5.4192 -0.5121 18 7 14.5431 -6.5228 -1.0003 19 14 14.4001 -4.8983 1.2405 20 1 13.4401 -5.5459 2.1702 21 1 15.7829 -5.3123 1.5893 22 1 14.2814 -3.4224 1.3553 23 6 11.8019 -4.0032 0.6445 24 6 10.2713 -3.9499 0.6144 25 6 5.5097 -2.4721 0.0033 26 6 4.1532 -2.4351 0.0032 27 6 3.4804 -1.1987 0.0016 28 7 2.1449 -1.1456 0.0056 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6313 2.1444 -0.0008 33 1 4.0927 2.1700 0.0001 34 1 6.2146 0.8575 0.0013 35 1 7.8358 -3.3686 0.0035 36 1 10.2251 -1.7960 0.5916 37 1 9.9567 -3.3574 -2.0178 38 1 9.9989 -1.5829 -1.8776 39 1 12.2544 -1.6702 -0.9223 40 1 12.2413 -2.5825 -2.4521 41 1 15.1290 -7.0657 -0.4498 42 1 12.1811 -3.2354 1.3189 43 1 12.1267 -4.9850 0.9891 44 1 9.8843 -4.0320 1.6301 45 1 9.8903 -4.7744 0.0118 46 1 6.0163 -3.4257 0.0041 47 1 3.5889 -3.3559 0.0036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610947668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:27 Heat of formation + Delta-G solvation = 39.274019 kcal Electronic energy + Delta-G solvation = -28140.842848 eV Core-core repulsion = 24288.778126 eV Total energy + Delta-G solvation = -3852.064722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.32147 -39.94433 -37.93145 -37.06760 -34.71503 -33.91934 -32.71316 -32.00028 -30.47296 -30.46250 -30.16766 -28.33880 -25.21905 -24.29257 -23.63972 -22.90211 -22.44833 -21.79572 -20.78211 -19.72104 -18.50126 -18.15688 -16.95468 -16.73484 -16.11770 -15.93705 -15.26412 -15.09745 -14.84370 -14.75185 -14.23306 -14.17452 -14.15150 -13.84385 -13.77194 -13.44648 -13.38969 -13.09651 -12.94397 -12.66818 -12.48085 -12.35676 -12.01317 -11.82244 -11.81533 -11.61709 -11.01544 -10.99025 -10.84565 -10.58084 -10.30873 -10.20924 -9.99488 -9.91019 -9.74047 -9.48159 -9.13829 -8.89760 -8.64569 -8.59965 -7.00671 -5.96163 -3.32108 -0.13931 0.28246 1.53549 2.11120 3.10580 3.13399 3.30057 3.48263 3.51399 3.70951 3.74091 4.13730 4.22689 4.36518 4.47381 4.51654 4.61174 4.72073 4.78906 4.93711 4.95794 5.06606 5.11728 5.14329 5.30868 5.37082 5.37949 5.47268 5.48334 5.60665 5.63083 5.64731 5.79784 5.86825 5.91972 6.01721 6.04898 6.11342 6.14776 6.30186 6.35928 6.38194 6.56036 6.62369 6.63693 6.69329 6.90205 7.50444 7.51862 7.94605 8.18324 8.31702 8.92432 9.70526 10.08007 11.19747 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.002002 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.962014 B =13979.817341 C =14242.150852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.166 3.834 3 C -0.178 4.178 4 C -0.043 4.043 5 C -0.119 4.119 6 C -0.025 4.025 7 C -0.133 4.133 8 C 0.555 3.445 9 O -0.537 6.537 10 N -0.717 5.717 11 C 0.150 3.850 12 C -0.141 4.141 13 C 0.151 3.849 14 N -0.606 5.606 15 C -0.259 4.259 16 H 0.086 0.914 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.129 3.871 24 C -0.141 4.141 25 C -0.072 4.072 26 C -0.100 4.100 27 C 0.149 3.851 28 N -0.480 5.480 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.397 0.603 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.025 0.975 40 H 0.066 0.934 41 H 0.262 0.738 42 H 0.028 0.972 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.135 0.865 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.271 13.592 3.301 31.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.013 3.987 3 C -0.198 4.198 4 C -0.068 4.068 5 C -0.121 4.121 6 C -0.044 4.044 7 C -0.136 4.136 8 C 0.342 3.658 9 O -0.415 6.415 10 N -0.367 5.367 11 C 0.047 3.953 12 C -0.182 4.182 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.388 4.388 16 H 0.104 0.896 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.003 3.997 24 C -0.181 4.181 25 C -0.093 4.093 26 C -0.118 4.118 27 C 0.027 3.973 28 N -0.190 5.190 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.232 0.768 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.153 0.847 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -28.012 13.312 3.310 31.190 hybrid contribution 0.504 0.511 0.996 1.228 sum -27.507 13.822 4.306 31.085 Atomic orbital electron populations 1.20817 0.88449 1.03839 1.03477 1.21586 0.97290 0.88213 0.91592 1.21734 0.94991 0.99368 1.03720 1.21583 0.94523 0.97348 0.93367 1.18802 0.94363 0.94355 1.04622 1.21452 0.92233 0.98164 0.92583 1.20034 0.93580 0.94075 1.05876 1.18166 0.86882 0.84043 0.76690 1.90781 1.66637 1.34158 1.49958 1.46222 1.08504 1.07738 1.74262 1.21048 0.77314 0.99144 0.97777 1.22386 0.98949 1.01290 0.95526 1.20899 0.90718 0.88850 0.97116 1.44404 1.51878 1.22932 1.13750 1.18930 1.12692 1.13995 0.93139 0.89630 1.25290 0.97604 0.96918 0.97812 1.69839 1.34903 1.12915 1.37425 0.86974 0.76521 0.79427 0.85897 1.21638 1.23097 1.19494 1.21300 0.90361 1.00225 0.87807 1.22357 0.99748 0.96124 0.99870 1.20986 0.93821 0.97748 0.96726 1.20664 0.93708 0.96629 1.00814 1.18966 0.89111 0.92909 0.96291 1.67909 1.08309 1.28770 1.13983 0.89921 0.90140 0.90358 0.84276 0.83876 0.83660 0.76808 0.89714 0.91750 0.92206 0.95671 0.91524 0.92769 0.95454 0.90463 0.92168 0.91058 0.84748 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.14 36.01 0.37 -0.15 16 2 C 0.17 1.34 6.78 -82.50 -0.56 0.78 16 3 C -0.18 -1.19 9.64 -39.78 -0.38 -1.57 16 4 C -0.04 -0.33 9.89 -39.17 -0.39 -0.71 16 5 C -0.12 -1.20 5.74 -106.82 -0.61 -1.82 16 6 C -0.02 -0.26 9.35 -38.74 -0.36 -0.63 16 7 C -0.13 -1.51 5.87 -104.98 -0.62 -2.12 16 8 C 0.56 7.75 7.73 -12.36 -0.10 7.65 16 9 O -0.54 -9.31 15.97 5.31 0.08 -9.23 16 10 N -0.72 -9.32 5.03 -54.73 -0.28 -9.59 16 11 C 0.15 2.40 2.42 -67.88 -0.16 2.23 16 12 C -0.14 -2.41 5.65 -26.61 -0.15 -2.56 16 13 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 14 N -0.61 -14.21 2.77 -172.32 -0.48 -14.69 16 15 C -0.26 -7.17 10.04 -15.06 -0.15 -7.32 16 16 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 17 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 18 N -0.91 -27.61 13.97 55.49 0.78 -26.83 16 19 Si 0.88 22.19 24.35 -169.99 -4.14 18.05 16 20 H -0.29 -6.94 6.62 56.52 0.37 -6.57 16 21 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 22 H -0.27 -6.72 6.63 56.52 0.37 -6.35 16 23 C 0.13 2.75 4.20 -3.72 -0.02 2.73 16 24 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 25 C -0.07 -0.68 9.44 -39.59 -0.37 -1.05 16 26 C -0.10 -0.95 9.95 -39.54 -0.39 -1.34 16 27 C 0.15 1.61 6.61 -84.77 -0.56 1.05 16 28 N -0.48 -5.06 10.23 -7.16 -0.07 -5.13 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16 32 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.15 1.49 7.62 -52.48 -0.40 1.09 16 35 H 0.40 4.05 6.59 -40.82 -0.27 3.78 16 36 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.03 0.58 7.07 -51.93 -0.37 0.22 16 43 H 0.08 1.79 4.50 -51.93 -0.23 1.55 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.13 0.94 6.35 -52.49 -0.33 0.60 16 47 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -34.14 376.63 -9.82 -43.95 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.67 Total: 1.58 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -4.72 Total: -3.78 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.05 Total: -56.25 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.14 -9.82 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610947668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.229 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds