Wall clock time and date at job start Tue Mar 31 2020 22:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39311 * 119.11337 * 2 1 4 4 C 1.36586 * 119.90250 * 179.97438 * 3 2 1 5 5 C 1.40892 * 118.15809 * 359.97438 * 4 3 2 6 6 C 1.40173 * 121.22396 * 179.97438 * 5 4 3 7 7 C 1.38551 * 119.40529 * 180.02562 * 6 5 4 8 8 C 1.47766 * 119.80328 * 179.97438 * 7 6 5 9 9 O 1.21565 * 120.00435 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99733 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99781 * 180.02562 * 10 8 7 12 12 C 1.53045 * 109.45982 * 275.02982 * 11 10 8 13 13 C 1.53189 * 109.31134 * 178.60228 * 12 11 10 14 14 N 1.46934 * 108.76266 * 54.65424 * 13 12 11 15 15 C 1.36942 * 120.62587 * 126.40500 * 14 13 12 16 16 H 1.08000 * 120.00446 * 332.60741 * 15 14 13 17 17 C 1.38814 * 119.99541 * 152.60329 * 15 14 13 18 18 N 1.31621 * 119.99416 * 159.34092 * 17 15 14 19 19 Si 1.86797 * 120.00279 * 339.34933 * 17 15 14 20 20 H 1.48502 * 109.47395 * 92.93872 * 19 17 15 21 21 H 1.48504 * 109.46969 * 212.93778 * 19 17 15 22 22 H 1.48502 * 109.47034 * 332.93731 * 19 17 15 23 23 C 1.46924 * 118.74070 * 306.38304 * 14 13 12 24 24 C 1.53041 * 109.45834 * 154.97724 * 11 10 8 25 25 C 1.40630 * 120.39011 * 359.97438 * 7 6 5 26 26 C 1.35701 * 120.92042 * 0.02562 * 25 7 6 27 27 C 1.40758 * 120.11405 * 0.02562 * 26 25 7 28 28 N 1.31120 * 119.11104 * 179.71843 * 2 1 3 29 29 H 1.09006 * 109.47076 * 90.00557 * 1 2 3 30 30 H 1.08998 * 109.47222 * 210.00366 * 1 2 3 31 31 H 1.08997 * 109.47211 * 330.00688 * 1 2 3 32 32 H 1.07993 * 120.04932 * 359.94896 * 3 2 1 33 33 H 1.07998 * 120.91906 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.29742 * 0.02562 * 6 5 4 35 35 H 0.97002 * 119.99804 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.45798 * 35.00182 * 11 10 8 37 37 H 1.08997 * 109.49375 * 298.56702 * 12 11 10 38 38 H 1.08998 * 109.49598 * 58.65961 * 12 11 10 39 39 H 1.09000 * 109.60005 * 294.87090 * 13 12 11 40 40 H 1.08999 * 109.70524 * 174.50448 * 13 12 11 41 41 H 0.97004 * 119.99855 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.58255 * 293.81989 * 23 14 13 43 43 H 1.09001 * 109.70052 * 173.46696 * 23 14 13 44 44 H 1.09002 * 109.49723 * 301.33621 * 24 11 10 45 45 H 1.08995 * 109.49612 * 61.42877 * 24 11 10 46 46 H 1.07991 * 119.53814 * 180.02562 * 25 7 6 47 47 H 1.07995 * 119.94109 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2171 0.0000 4 6 3.5506 1.2359 0.0005 5 6 4.2325 0.0030 0.0016 6 6 5.6331 -0.0527 0.0017 7 6 6.2649 -1.2858 0.0022 8 6 7.7409 -1.3547 0.0017 9 8 8.3973 -0.3315 0.0013 10 7 8.3596 -2.5522 0.0028 11 6 9.8231 -2.6205 0.0028 12 6 10.3383 -2.5192 -1.4347 13 6 11.8697 -2.5559 -1.4278 14 7 12.3103 -3.7615 -0.7126 15 6 13.1787 -4.6427 -1.2997 16 1 13.2110 -4.7335 -2.3754 17 6 14.0175 -5.4192 -0.5121 18 7 14.5431 -6.5228 -1.0003 19 14 14.4001 -4.8983 1.2405 20 1 13.4401 -5.5459 2.1702 21 1 15.7829 -5.3123 1.5893 22 1 14.2814 -3.4224 1.3553 23 6 11.8019 -4.0032 0.6445 24 6 10.2713 -3.9499 0.6144 25 6 5.5097 -2.4721 0.0033 26 6 4.1532 -2.4351 0.0032 27 6 3.4804 -1.1987 0.0016 28 7 2.1449 -1.1456 0.0056 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6313 2.1444 -0.0008 33 1 4.0927 2.1700 0.0001 34 1 6.2146 0.8575 0.0013 35 1 7.8358 -3.3686 0.0035 36 1 10.2251 -1.7960 0.5916 37 1 9.9567 -3.3574 -2.0178 38 1 9.9989 -1.5829 -1.8776 39 1 12.2544 -1.6702 -0.9223 40 1 12.2413 -2.5825 -2.4521 41 1 15.1290 -7.0657 -0.4498 42 1 12.1811 -3.2354 1.3189 43 1 12.1267 -4.9850 0.9891 44 1 9.8843 -4.0320 1.6301 45 1 9.8903 -4.7744 0.0118 46 1 6.0163 -3.4257 0.0041 47 1 3.5889 -3.3559 0.0036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610947668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:26 Heat of formation + Delta-G solvation = 17.145591 kcal Electronic energy + Delta-G solvation = -28141.802408 eV Core-core repulsion = 24288.778126 eV Total energy + Delta-G solvation = -3853.024283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.02780 -41.01471 -39.30330 -37.94851 -36.15628 -34.59436 -34.14712 -33.14193 -31.99839 -31.71240 -31.13744 -29.05293 -26.86101 -25.02371 -24.76060 -24.29668 -23.33395 -23.05158 -21.79770 -21.22675 -19.45303 -19.03045 -18.59380 -17.74665 -17.26057 -16.88276 -16.65846 -16.15393 -15.94806 -15.65695 -15.47878 -15.35844 -15.34503 -14.85873 -14.75708 -14.56306 -14.45374 -14.25214 -13.97279 -13.86070 -13.78807 -13.47638 -13.12481 -13.01438 -12.62280 -12.58017 -12.44862 -12.30446 -12.26713 -12.03281 -11.80377 -11.63431 -11.57654 -11.38655 -11.11506 -10.69898 -10.54242 -10.14935 -9.74543 -9.33848 -8.97058 -8.16088 -5.48524 -0.84166 -0.37605 0.83331 1.29570 1.35864 1.43128 1.51663 2.03570 2.24179 2.41549 3.02306 3.05590 3.13602 3.31450 3.52483 3.58029 3.63873 3.76035 3.85034 3.95444 3.95876 4.01540 4.19649 4.25692 4.30671 4.38080 4.47472 4.61693 4.64027 4.68995 4.79437 4.80397 4.83769 4.87406 4.91260 4.93938 4.99249 5.00354 5.05856 5.15443 5.17188 5.18958 5.23674 5.38226 5.44286 5.52082 5.73441 5.86619 6.12793 6.49174 6.87744 6.90458 7.13805 7.61153 8.01593 9.03606 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.002002 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.962014 B =13979.817341 C =14242.150852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.159 3.841 3 C -0.173 4.173 4 C -0.048 4.048 5 C -0.136 4.136 6 C -0.025 4.025 7 C -0.149 4.149 8 C 0.558 3.442 9 O -0.576 6.576 10 N -0.705 5.705 11 C 0.160 3.840 12 C -0.129 4.129 13 C 0.147 3.853 14 N -0.618 5.618 15 C -0.248 4.248 16 H 0.053 0.947 17 C -0.033 4.033 18 N -0.955 5.955 19 Si 0.944 3.056 20 H -0.268 1.268 21 H -0.312 1.312 22 H -0.265 1.265 23 C 0.121 3.879 24 C -0.128 4.128 25 C -0.068 4.068 26 C -0.106 4.106 27 C 0.131 3.869 28 N -0.511 5.511 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.175 0.825 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.030 0.970 40 H 0.059 0.941 41 H 0.262 0.738 42 H 0.032 0.968 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.157 0.843 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.392 15.161 4.681 35.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.007 3.993 3 C -0.192 4.192 4 C -0.074 4.074 5 C -0.138 4.138 6 C -0.045 4.045 7 C -0.152 4.152 8 C 0.347 3.653 9 O -0.457 6.457 10 N -0.356 5.356 11 C 0.055 3.945 12 C -0.169 4.169 13 C 0.021 3.979 14 N -0.343 5.343 15 C -0.378 4.378 16 H 0.070 0.930 17 C -0.228 4.228 18 N -0.601 5.601 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.241 1.241 22 H -0.190 1.190 23 C -0.004 4.004 24 C -0.168 4.168 25 C -0.088 4.088 26 C -0.125 4.125 27 C 0.009 3.991 28 N -0.221 5.221 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.193 0.807 33 H 0.185 0.815 34 H 0.163 0.837 35 H 0.251 0.749 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.093 0.907 46 H 0.175 0.825 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -31.198 14.890 4.704 34.887 hybrid contribution 1.303 0.141 0.474 1.393 sum -29.895 15.031 5.178 33.859 Atomic orbital electron populations 1.20932 0.86206 1.04853 1.04421 1.22272 0.98923 0.88223 0.89845 1.22136 0.94788 1.00305 1.02010 1.21945 0.95247 0.97419 0.92763 1.18969 0.94069 0.95381 1.05416 1.21535 0.92733 0.98048 0.92137 1.19877 0.91967 0.95215 1.08123 1.18496 0.87821 0.83452 0.75541 1.90759 1.67656 1.35421 1.51838 1.45950 1.07277 1.08463 1.73935 1.20731 0.78977 0.98295 0.96460 1.22208 0.96480 1.01536 0.96647 1.21009 0.92824 0.87623 0.96400 1.44505 1.51621 1.23429 1.14755 1.18856 1.13008 1.13943 0.91992 0.92959 1.25887 0.98014 0.96952 1.01972 1.69964 1.36525 1.14372 1.39258 0.85952 0.75960 0.79139 0.81637 1.19476 1.24074 1.19006 1.21372 0.93515 0.99215 0.86340 1.22174 0.96198 0.96481 1.01944 1.21119 0.93722 0.97902 0.96094 1.20863 0.93890 0.96966 1.00744 1.19279 0.89673 0.93615 0.96519 1.67964 1.08234 1.30228 1.15674 0.88825 0.90723 0.87769 0.80715 0.81514 0.83749 0.74915 0.90975 0.91761 0.91654 0.95216 0.92273 0.92926 0.94998 0.92292 0.89107 0.90689 0.82507 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.14 71.24 0.72 0.00 16 2 C 0.16 2.22 6.78 42.92 0.29 2.51 16 3 C -0.17 -1.80 9.64 22.14 0.21 -1.58 16 4 C -0.05 -0.64 9.89 22.53 0.22 -0.41 16 5 C -0.14 -2.59 5.74 -21.29 -0.12 -2.71 16 6 C -0.02 -0.51 9.35 22.81 0.21 -0.30 16 7 C -0.15 -3.22 5.87 -20.10 -0.12 -3.34 16 8 C 0.56 14.86 7.73 86.76 0.67 15.53 16 9 O -0.58 -19.61 15.97 -3.92 -0.06 -19.67 16 10 N -0.71 -16.81 5.03 -445.32 -2.24 -19.05 16 11 C 0.16 4.78 2.42 45.02 0.11 4.89 16 12 C -0.13 -4.23 5.65 30.67 0.17 -4.06 16 13 C 0.15 5.83 6.52 86.36 0.56 6.39 16 14 N -0.62 -28.85 2.77 -699.09 -1.94 -30.78 16 15 C -0.25 -14.02 10.04 84.03 0.84 -13.18 16 16 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 17 C -0.03 -1.94 5.23 84.86 0.44 -1.50 16 18 N -0.96 -59.65 13.97 21.65 0.30 -59.35 16 19 Si 0.94 46.16 24.35 68.60 1.67 47.83 16 20 H -0.27 -12.13 6.62 99.48 0.66 -11.47 16 21 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 22 H -0.27 -12.62 6.63 99.48 0.66 -11.96 16 23 C 0.12 4.94 4.20 86.36 0.36 5.30 16 24 C -0.13 -3.94 5.55 30.67 0.17 -3.77 16 25 C -0.07 -1.16 9.44 22.27 0.21 -0.95 16 26 C -0.11 -1.90 9.95 22.30 0.22 -1.68 16 27 C 0.13 2.69 6.61 40.36 0.27 2.96 16 28 N -0.51 -10.13 10.23 -176.58 -1.81 -11.93 16 29 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.16 8.07 -2.39 -0.02 0.14 16 32 H 0.18 0.49 8.06 -2.91 -0.02 0.46 16 33 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.14 2.90 7.62 -2.91 -0.02 2.88 16 35 H 0.41 7.25 6.59 -92.71 -0.61 6.63 16 36 H 0.07 2.41 7.58 -2.39 -0.02 2.39 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 41 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.03 1.29 7.07 -2.39 -0.02 1.27 16 43 H 0.06 2.63 4.50 -2.39 -0.01 2.62 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 46 H 0.16 1.79 6.35 -2.92 -0.02 1.77 16 47 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -76.01 376.63 1.68 -74.34 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.29 Total: 14.51 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.46 Total: 4.10 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -5.68 Total: -121.11 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.06 Total: -19.67 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.67 Total: 47.83 kcal Total: -76.01 1.68 -74.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610947668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.481 kcal (2) G-P(sol) polarization free energy of solvation -76.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds