Wall clock time and date at job start Tue Mar 31 2020 23:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 115.51586 * 2 1 4 4 C 1.52994 * 117.44541 * 214.64922 * 2 1 3 5 5 H 1.09002 * 119.52668 * 140.61371 * 4 2 1 6 6 C 1.54386 * 118.12707 * 344.02137 * 4 2 1 7 7 N 1.48559 * 104.59243 * 272.77244 * 6 4 2 8 8 C 1.46896 * 110.99805 * 159.04349 * 7 6 4 9 9 C 1.50700 * 109.47855 * 54.57541 * 8 7 6 10 10 N 1.29837 * 118.34409 * 0.02562 * 9 8 7 11 11 C 1.35637 * 121.62355 * 179.97438 * 10 9 8 12 12 C 1.39634 * 121.61886 * 180.02562 * 11 10 9 13 13 C 1.37718 * 119.68933 * 179.97438 * 12 11 10 14 14 C 1.38874 * 120.82645 * 0.02562 * 13 12 11 15 15 C 1.37792 * 120.57040 * 359.95490 * 14 13 12 16 16 C 1.39370 * 119.52157 * 359.75247 * 15 14 13 17 17 C 1.46958 * 121.90783 * 179.74933 * 16 15 14 18 18 O 1.21724 * 121.28465 * 0.59111 * 17 16 15 19 19 N 1.35339 * 117.42664 * 180.31862 * 17 16 15 20 20 C 1.37104 * 119.71796 * 180.25284 * 19 17 16 21 21 H 1.07998 * 120.00119 * 138.86552 * 20 19 17 22 22 C 1.39082 * 119.99899 * 318.86839 * 20 19 17 23 23 N 1.31253 * 119.99796 * 340.42979 * 22 20 19 24 24 Si 1.86797 * 120.00076 * 160.43197 * 22 20 19 25 25 H 1.48503 * 109.47127 * 89.99637 * 24 22 20 26 26 H 1.48501 * 109.46942 * 209.99907 * 24 22 20 27 27 H 1.48495 * 109.47053 * 329.99873 * 24 22 20 28 28 C 1.48550 * 104.22475 * 39.48188 * 7 6 4 29 29 C 1.52998 * 117.44456 * 145.42111 * 2 1 3 30 30 H 1.09001 * 119.52692 * 220.94306 * 29 2 1 31 31 H 1.09000 * 109.47358 * 281.38285 * 1 2 3 32 32 H 1.08999 * 109.47231 * 41.38077 * 1 2 3 33 33 H 1.08998 * 109.47308 * 161.38154 * 1 2 3 34 34 H 1.09001 * 109.46928 * 205.41847 * 3 2 1 35 35 H 1.09002 * 109.47251 * 325.42027 * 3 2 1 36 36 H 1.09000 * 109.47262 * 85.42208 * 3 2 1 37 37 H 1.09001 * 110.40825 * 153.99215 * 6 4 2 38 38 H 1.09002 * 110.41153 * 31.55207 * 6 4 2 39 39 H 1.09009 * 109.47218 * 294.57671 * 8 7 6 40 40 H 1.09006 * 109.47592 * 174.58095 * 8 7 6 41 41 H 1.07995 * 120.15720 * 359.97438 * 12 11 10 42 42 H 1.07995 * 119.58406 * 179.97438 * 13 12 11 43 43 H 1.07999 * 119.70957 * 179.97438 * 14 13 12 44 44 H 1.08000 * 120.23770 * 180.02562 * 15 14 13 45 45 H 0.96994 * 120.00218 * 180.02562 * 23 22 20 46 46 H 1.08998 * 110.41484 * 79.29363 * 28 7 6 47 47 H 1.09007 * 110.41587 * 201.73785 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1891 1.3808 0.0000 4 6 2.2351 -1.1170 -0.7719 5 1 3.1333 -0.8890 -1.3460 6 6 1.4090 -2.3577 -1.1739 7 7 1.5033 -3.2658 -0.0019 8 6 0.4054 -4.2417 -0.0026 9 6 0.3878 -4.9775 -1.3176 10 7 1.2821 -4.6709 -2.2075 11 6 1.3279 -5.2911 -3.4129 12 6 2.2901 -4.9617 -4.3696 13 6 2.3003 -5.6174 -5.5807 14 6 1.3643 -6.6034 -5.8640 15 6 0.4052 -6.9466 -4.9361 16 6 0.3810 -6.2995 -3.7019 17 6 -0.6215 -6.6201 -2.6763 18 8 -1.4667 -7.4757 -2.8642 19 7 -0.5651 -5.9313 -1.5127 20 6 -1.4744 -6.1962 -0.5213 21 1 -1.1537 -6.2353 0.5092 22 6 -2.8098 -6.4145 -0.8428 23 7 -3.2829 -6.0030 -1.9959 24 14 -3.9300 -7.2933 0.3664 25 1 -4.5669 -6.2971 1.2649 26 1 -4.9813 -8.0310 -0.3791 27 1 -3.1324 -8.2501 1.1746 28 6 1.4090 -2.3591 1.1710 29 6 2.2351 -1.1179 0.7706 30 1 3.1185 -0.8858 1.3655 31 1 -0.3634 0.2028 1.0074 32 1 -0.3633 0.7711 -0.6793 33 1 -0.3634 -0.9739 -0.3281 34 1 3.1832 1.3088 -0.4411 35 1 1.5820 2.0732 -0.5833 36 1 2.2716 1.7441 1.0244 37 1 1.8386 -2.8307 -2.0569 38 1 0.3710 -2.0802 -1.3572 39 1 -0.5429 -3.7220 0.1356 40 1 0.5513 -4.9535 0.8101 41 1 3.0228 -4.1963 -4.1610 42 1 3.0450 -5.3609 -6.3196 43 1 1.3887 -7.1058 -6.8197 44 1 -0.3199 -7.7145 -5.1619 45 1 -4.2143 -6.1549 -2.2201 46 1 0.3710 -2.0817 1.3547 47 1 1.8386 -2.8332 2.0536 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741805539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:38 Heat of formation + Delta-G solvation = 57.624389 kcal Electronic energy + Delta-G solvation = -30261.777398 eV Core-core repulsion = 26410.508408 eV Total energy + Delta-G solvation = -3851.268990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32746 -41.20862 -39.23577 -38.33584 -36.08820 -35.50717 -33.76741 -32.00898 -31.63966 -30.08297 -29.14133 -28.60426 -27.73191 -27.45534 -24.77194 -23.98434 -22.72995 -22.05502 -21.08358 -20.54920 -19.48323 -19.31602 -18.53508 -17.47632 -17.03747 -16.83988 -16.43597 -16.17525 -15.94792 -15.56734 -15.42275 -15.20465 -15.00234 -14.77666 -14.57967 -14.21900 -14.03092 -13.77969 -13.68074 -13.45229 -13.16637 -13.05722 -12.96827 -12.90344 -12.79364 -12.64449 -12.50136 -12.46580 -12.27027 -12.14026 -12.01974 -11.68951 -11.33780 -10.83422 -10.71396 -10.53921 -10.23355 -10.13668 -9.92161 -9.25030 -8.81413 -8.54991 -6.50621 -0.11777 0.07912 1.31074 1.38882 1.48748 1.50736 1.99375 2.23982 2.42182 2.68743 2.86316 3.12870 3.22959 3.36924 3.61108 3.79104 3.81494 3.91954 4.00942 4.13730 4.21141 4.21363 4.32555 4.38963 4.41343 4.47890 4.58668 4.62514 4.67946 4.71376 4.80290 4.85456 4.94389 4.95997 5.08584 5.10434 5.12976 5.15645 5.21831 5.28334 5.33559 5.36011 5.46673 5.54354 5.55717 5.62934 5.76217 5.96651 5.99433 6.07221 6.28993 6.59155 6.82362 7.36627 7.60836 8.43281 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009031 B = 0.004945 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.572808 B = 5661.039059 C = 8118.947482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 C -0.107 4.107 4 C -0.160 4.160 5 H 0.122 0.878 6 C 0.061 3.939 7 N -0.492 5.492 8 C 0.122 3.878 9 C 0.350 3.650 10 N -0.533 5.533 11 C 0.135 3.865 12 C -0.125 4.125 13 C -0.071 4.071 14 C -0.150 4.150 15 C -0.068 4.068 16 C -0.238 4.238 17 C 0.495 3.505 18 O -0.552 6.552 19 N -0.368 5.368 20 C -0.404 4.404 21 H 0.123 0.877 22 C 0.032 3.968 23 N -0.849 5.849 24 Si 0.993 3.007 25 H -0.250 1.250 26 H -0.288 1.288 27 H -0.256 1.256 28 C 0.053 3.947 29 C -0.150 4.150 30 H 0.132 0.868 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.017 0.983 39 H 0.058 0.942 40 H 0.107 0.893 41 H 0.151 0.849 42 H 0.172 0.828 43 H 0.158 0.842 44 H 0.109 0.891 45 H 0.276 0.724 46 H 0.044 0.956 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.218 11.861 2.341 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.098 4.098 3 C -0.164 4.164 4 C -0.179 4.179 5 H 0.140 0.860 6 C -0.066 4.066 7 N -0.216 5.216 8 C -0.008 4.008 9 C 0.086 3.914 10 N -0.259 5.259 11 C 0.021 3.979 12 C -0.145 4.145 13 C -0.090 4.090 14 C -0.168 4.168 15 C -0.087 4.087 16 C -0.245 4.245 17 C 0.291 3.709 18 O -0.430 6.430 19 N -0.072 5.072 20 C -0.530 4.530 21 H 0.140 0.860 22 C -0.180 4.180 23 N -0.479 5.479 24 Si 0.814 3.186 25 H -0.174 1.174 26 H -0.214 1.214 27 H -0.180 1.180 28 C -0.074 4.074 29 C -0.169 4.169 30 H 0.150 0.850 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.169 0.831 42 H 0.190 0.810 43 H 0.175 0.825 44 H 0.127 0.873 45 H 0.085 0.915 46 H 0.062 0.938 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.570 11.529 2.141 16.474 hybrid contribution -2.657 -1.195 0.039 2.913 sum 8.913 10.335 2.181 13.821 Atomic orbital electron populations 1.21460 0.93381 1.01280 1.02210 1.21790 0.94327 0.91915 1.01760 1.21284 1.00169 0.92176 1.02746 1.23730 1.02098 0.96999 0.95028 0.85973 1.22894 0.97046 0.90645 0.95983 1.65550 1.40139 1.13166 1.02787 1.20889 0.93915 0.95207 0.90790 1.23349 0.86084 0.85421 0.96516 1.68674 1.25431 1.29702 1.02088 1.19353 0.94205 0.91558 0.92782 1.21014 0.98336 1.02373 0.92744 1.21579 0.97802 0.93512 0.96132 1.21351 0.95513 1.00038 0.99910 1.21011 0.98199 0.97748 0.91775 1.20984 1.00864 1.04837 0.97853 1.18870 0.85646 0.82550 0.83835 1.90587 1.38891 1.34201 1.79350 1.42329 1.24087 1.26048 1.14760 1.19996 0.88325 1.55136 0.89521 0.86008 1.26410 0.99033 0.94283 0.98259 1.69924 1.16129 1.37546 1.24344 0.84985 0.77137 0.78928 0.77574 1.17381 1.21355 1.17994 1.22765 0.98734 0.91677 0.94240 1.23509 1.02269 0.96456 0.94620 0.85034 0.91336 0.91599 0.94387 0.91652 0.91553 0.90964 0.87475 0.96488 0.92438 0.87544 0.83084 0.81021 0.82479 0.87273 0.91472 0.93830 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.52 71.98 0.61 -2.28 16 2 C -0.10 -2.04 2.67 -52.18 -0.14 -2.18 16 3 C -0.11 -1.63 9.84 71.98 0.71 -0.92 16 4 C -0.16 -3.97 6.71 -9.90 -0.07 -4.04 16 5 H 0.12 2.76 8.13 -2.39 -0.02 2.74 16 6 C 0.06 2.00 4.71 86.45 0.41 2.41 16 7 N -0.49 -15.97 5.28 -886.04 -4.68 -20.65 16 8 C 0.12 4.60 4.18 85.56 0.36 4.96 16 9 C 0.35 16.12 7.21 137.94 0.99 17.12 16 10 N -0.53 -23.08 6.35 -179.53 -1.14 -24.22 16 11 C 0.14 5.85 6.63 39.65 0.26 6.12 16 12 C -0.13 -4.12 10.03 22.48 0.23 -3.89 16 13 C -0.07 -1.91 10.00 22.30 0.22 -1.69 16 14 C -0.15 -4.58 10.02 22.32 0.22 -4.36 16 15 C -0.07 -2.83 9.68 22.44 0.22 -2.62 16 16 C -0.24 -11.67 5.89 -19.96 -0.12 -11.79 16 17 C 0.49 28.40 6.93 86.44 0.60 29.00 16 18 O -0.55 -35.05 14.28 -4.42 -0.06 -35.11 16 19 N -0.37 -19.73 2.68 -460.24 -1.23 -20.96 16 20 C -0.40 -21.38 8.24 84.07 0.69 -20.69 16 21 H 0.12 5.78 7.07 -2.91 -0.02 5.76 16 22 C 0.03 1.71 4.36 84.98 0.37 2.08 16 23 N -0.85 -50.16 11.54 21.68 0.25 -49.91 16 24 Si 0.99 42.00 29.60 68.60 2.03 44.03 16 25 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 26 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 27 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 28 C 0.05 1.36 5.96 86.45 0.52 1.87 16 29 C -0.15 -3.29 6.81 -9.90 -0.07 -3.36 16 30 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 33 H 0.04 1.08 4.92 -2.39 -0.01 1.07 16 34 H 0.06 0.91 7.96 -2.39 -0.02 0.89 16 35 H 0.07 0.95 8.01 -2.39 -0.02 0.93 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 3.89 5.72 -2.39 -0.01 3.88 16 38 H 0.02 0.62 5.81 -2.39 -0.01 0.61 16 39 H 0.06 2.27 7.78 -2.38 -0.02 2.25 16 40 H 0.11 3.78 7.58 -2.38 -0.02 3.76 16 41 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 42 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 44 H 0.11 4.75 7.83 -2.91 -0.02 4.73 16 45 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.04 1.15 6.43 -2.39 -0.02 1.13 16 47 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -72.45 369.77 2.18 -70.27 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.99 Total: 30.82 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 6.02 Total: 5.74 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -6.80 Total: -115.75 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.06 Total: -35.11 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -72.45 2.18 -70.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741805539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.896 kcal (2) G-P(sol) polarization free energy of solvation -72.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds