Wall clock time and date at job start Tue Mar 31 2020 22:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38265 * 119.88561 * 2 1 4 4 C 1.37977 * 120.21849 * 179.97438 * 3 2 1 5 5 C 1.39614 * 119.98573 * 359.72483 * 4 3 2 6 6 C 1.47855 * 120.11367 * 180.27419 * 5 4 3 7 7 O 1.21554 * 119.99940 * 214.11455 * 6 5 4 8 8 N 1.34782 * 120.00030 * 34.11885 * 6 5 4 9 9 C 1.46969 * 120.58991 * 4.96481 * 8 6 5 10 10 C 1.53811 * 108.39769 * 124.76047 * 9 8 6 11 11 N 1.46966 * 108.58101 * 49.63082 * 10 9 8 12 12 C 1.36936 * 120.59158 * 124.62487 * 11 10 9 13 13 H 1.08001 * 120.00376 * 210.96856 * 12 11 10 14 14 C 1.38815 * 120.00109 * 30.96793 * 12 11 10 15 15 N 1.31622 * 120.00137 * 215.01165 * 14 12 11 16 16 Si 1.86796 * 119.99812 * 35.01088 * 14 12 11 17 17 H 1.48496 * 109.47390 * 92.99832 * 16 14 12 18 18 H 1.48505 * 109.47038 * 212.99783 * 16 14 12 19 19 H 1.48505 * 109.47124 * 332.99247 * 16 14 12 20 20 C 1.46962 * 118.81433 * 304.65131 * 11 10 9 21 21 C 1.46966 * 120.59341 * 185.24136 * 8 6 5 22 22 C 1.39465 * 119.77206 * 0.57462 * 5 4 3 23 23 C 1.38590 * 119.78176 * 359.42489 * 22 5 4 24 24 N 1.40232 * 119.99199 * 180.30087 * 23 22 5 25 25 C 1.36560 * 125.66815 * 129.69224 * 24 23 22 26 26 C 1.34853 * 108.20301 * 179.83034 * 25 24 23 27 27 C 1.40942 * 107.46167 * 0.42473 * 26 25 24 28 28 C 1.34852 * 107.47097 * 359.73963 * 27 26 25 29 29 H 1.08994 * 109.47106 * 269.97410 * 1 2 3 30 30 H 1.08997 * 109.47029 * 29.97719 * 1 2 3 31 31 H 1.09004 * 109.46560 * 149.97841 * 1 2 3 32 32 H 1.08002 * 119.89088 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.00424 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.60407 * 244.53772 * 9 8 6 35 35 H 1.08993 * 109.61021 * 5.04819 * 9 8 6 36 36 H 1.09001 * 109.74130 * 289.84411 * 10 9 8 37 37 H 1.08996 * 109.53249 * 169.29748 * 10 9 8 38 38 H 0.97001 * 119.99825 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.60719 * 295.47786 * 20 11 10 40 40 H 1.08994 * 109.75244 * 175.05439 * 20 11 10 41 41 H 1.08996 * 109.61014 * 354.94704 * 21 8 6 42 42 H 1.09003 * 109.60447 * 115.28873 * 21 8 6 43 43 H 1.07993 * 120.10603 * 179.70048 * 22 5 4 44 44 H 1.08002 * 125.90082 * 0.02562 * 25 24 23 45 45 H 1.07992 * 126.27173 * 180.16276 * 26 25 24 46 46 H 1.08007 * 126.26640 * 179.71217 * 27 26 25 47 47 H 1.08001 * 125.90294 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5757 1.2068 0.0005 5 6 4.2805 0.0016 0.0069 6 6 5.7590 0.0069 0.0136 7 8 6.3725 -0.8640 -0.5718 8 7 6.4265 0.9774 0.6688 9 6 5.7017 1.9735 1.4704 10 6 6.2716 1.9549 2.8989 11 7 7.7367 2.0396 2.8197 12 6 8.4147 3.0261 3.4846 13 1 9.3387 3.4128 3.0808 14 6 7.9144 3.5292 4.6777 15 7 8.0705 4.8026 4.9720 16 14 7.0195 2.3990 5.8657 17 1 7.9838 1.8610 6.8586 18 1 5.9577 3.1618 6.5699 19 1 6.4056 1.2757 5.1128 20 6 8.4610 1.0469 2.0136 21 6 7.8915 1.0620 0.5896 22 6 3.5851 -1.2073 0.0005 23 6 2.1992 -1.2043 0.0000 24 7 1.4956 -2.4173 0.0000 25 6 0.4828 -2.7503 0.8534 26 6 0.0586 -3.9913 0.5397 27 6 0.8426 -4.4461 -0.5397 28 6 1.7133 -3.4641 -0.8496 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3632 -0.8898 -0.5142 32 1 1.6523 2.1320 0.0004 33 1 4.1103 2.1452 0.0001 34 1 5.8359 2.9628 1.0329 35 1 4.6414 1.7222 1.4946 36 1 5.9851 1.0290 3.3976 37 1 5.8855 2.8082 3.4564 38 1 7.7212 5.1540 5.8059 39 1 8.3304 0.0563 2.4493 40 1 9.5214 1.2975 1.9862 41 1 8.2777 0.2087 0.0321 42 1 8.1779 1.9866 0.0882 43 1 4.1249 -2.1427 0.0005 44 1 0.0876 -2.1263 1.6413 45 1 -0.7337 -4.5384 1.0288 46 1 0.7613 -5.4056 -1.0287 47 1 2.4549 -3.4994 -1.6339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744559445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:20 Heat of formation + Delta-G solvation = 99.724251 kcal Electronic energy + Delta-G solvation = -29326.826447 eV Core-core repulsion = 25477.383043 eV Total energy + Delta-G solvation = -3849.443403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.87506 -40.39129 -38.65431 -37.08044 -34.36475 -33.55106 -32.88857 -31.63469 -30.76853 -29.40702 -29.04316 -27.96002 -26.85312 -23.94416 -23.80070 -22.90251 -22.39758 -21.23722 -20.41223 -20.26554 -19.28728 -18.28235 -16.97689 -16.58635 -16.10423 -15.85641 -15.50948 -15.24057 -14.79678 -14.48149 -14.38978 -14.33464 -14.00926 -13.87099 -13.64869 -13.53479 -13.49087 -13.10568 -12.74771 -12.64087 -12.52810 -12.32578 -12.23275 -12.19845 -11.98924 -11.79630 -11.54209 -11.09035 -10.86749 -10.58123 -10.43672 -10.24353 -9.78668 -9.65622 -9.55948 -9.15160 -8.78770 -8.45693 -8.39611 -8.31842 -7.02815 -6.17002 -3.41476 0.52354 0.82502 2.07784 2.60623 2.74317 2.83460 3.11727 3.30270 3.42626 3.48296 3.49153 4.29469 4.40968 4.45376 4.54814 4.66459 4.77109 4.80431 4.92630 4.98959 5.11591 5.19437 5.22022 5.25666 5.32749 5.40771 5.47085 5.53399 5.55917 5.63039 5.70530 5.79947 5.82437 5.97038 5.99033 5.99242 6.04134 6.05206 6.11664 6.15992 6.37281 6.43817 6.52444 6.68330 6.74228 6.81519 6.98474 7.26202 7.59400 7.83539 8.19787 8.25012 8.81742 9.58801 10.00325 10.97720 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.003019 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.446922 B = 9273.144059 C = 9808.243320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.112 4.112 4 C -0.084 4.084 5 C -0.111 4.111 6 C 0.554 3.446 7 O -0.547 6.547 8 N -0.589 5.589 9 C 0.068 3.932 10 C 0.131 3.869 11 N -0.599 5.599 12 C -0.277 4.277 13 H 0.081 0.919 14 C 0.043 3.957 15 N -0.880 5.880 16 Si 0.837 3.163 17 H -0.290 1.290 18 H -0.294 1.294 19 H -0.258 1.258 20 C 0.131 3.869 21 C 0.096 3.904 22 C -0.060 4.060 23 C 0.107 3.893 24 N -0.399 5.399 25 C -0.008 4.008 26 C -0.198 4.198 27 C -0.197 4.197 28 C -0.009 4.009 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.264 0.736 39 H 0.026 0.974 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.139 0.861 44 H 0.161 0.839 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.770 -10.031 -11.298 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.066 4.066 3 C -0.131 4.131 4 C -0.102 4.102 5 C -0.115 4.115 6 C 0.342 3.658 7 O -0.427 6.427 8 N -0.320 5.320 9 C -0.056 4.056 10 C 0.004 3.996 11 N -0.323 5.323 12 C -0.404 4.404 13 H 0.099 0.901 14 C -0.159 4.159 15 N -0.519 5.519 16 Si 0.664 3.336 17 H -0.217 1.217 18 H -0.220 1.220 19 H -0.182 1.182 20 C 0.005 3.995 21 C -0.028 4.028 22 C -0.080 4.080 23 C 0.017 3.983 24 N -0.071 5.071 25 C -0.136 4.136 26 C -0.222 4.222 27 C -0.221 4.221 28 C -0.137 4.137 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.156 0.844 44 H 0.179 0.821 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.250 -10.027 -11.467 22.273 hybrid contribution -0.392 -0.513 1.026 1.212 sum -16.641 -10.540 -10.441 22.294 Atomic orbital electron populations 1.20938 0.90187 1.03652 1.02940 1.20000 0.96779 0.91498 0.98338 1.20934 0.93718 0.97378 1.01044 1.21763 0.94401 0.98109 0.95933 1.19798 0.93745 0.93509 1.04446 1.18191 0.86596 0.81653 0.79368 1.90748 1.69184 1.36931 1.45803 1.47919 1.08070 1.28782 1.47230 1.23194 0.96254 0.91615 0.94555 1.21822 0.85091 1.00196 0.92471 1.44274 1.00290 1.31611 1.56093 1.18749 1.09121 1.10484 1.02058 0.90108 1.25328 0.97721 0.95438 0.97442 1.70075 1.46208 1.11285 1.24361 0.87556 0.79325 0.83406 0.83287 1.21735 1.22018 1.18225 1.21365 0.96542 0.92469 0.89168 1.22268 0.78286 1.02233 0.99963 1.21046 0.91638 0.98600 0.96731 1.17418 0.90456 0.84255 1.06203 1.41473 1.27865 1.11114 1.26676 1.21921 0.94359 0.98462 0.98809 1.20938 1.04040 0.95832 1.01425 1.20939 0.99896 0.99773 1.01494 1.22009 1.04432 0.88089 0.99129 0.90467 0.90745 0.90797 0.84268 0.83552 0.90512 0.89325 0.94900 0.90324 0.92617 0.95560 0.90540 0.89543 0.91174 0.84356 0.82139 0.84431 0.84419 0.82027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 8.60 36.01 0.31 -0.59 16 2 C -0.06 -0.63 5.88 -104.37 -0.61 -1.25 16 3 C -0.11 -1.05 9.67 -39.67 -0.38 -1.43 16 4 C -0.08 -0.93 7.35 -39.16 -0.29 -1.22 16 5 C -0.11 -1.53 5.36 -104.99 -0.56 -2.09 16 6 C 0.55 9.21 7.40 -12.32 -0.09 9.12 16 7 O -0.55 -10.54 16.21 5.32 0.09 -10.46 16 8 N -0.59 -9.80 2.94 -173.32 -0.51 -10.31 16 9 C 0.07 1.08 4.98 -3.36 -0.02 1.06 16 10 C 0.13 2.64 4.57 -3.37 -0.02 2.62 16 11 N -0.60 -13.46 2.64 -171.77 -0.45 -13.91 16 12 C -0.28 -7.29 9.82 -15.06 -0.15 -7.43 16 13 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 14 C 0.04 1.16 4.82 -17.43 -0.08 1.08 16 15 N -0.88 -25.41 13.97 55.49 0.78 -24.64 16 16 Si 0.84 20.43 26.66 -169.99 -4.53 15.90 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.26 -6.01 4.91 56.52 0.28 -5.73 16 20 C 0.13 2.52 6.67 -3.60 -0.02 2.50 16 21 C 0.10 1.62 6.60 -3.60 -0.02 1.60 16 22 C -0.06 -0.79 9.22 -38.99 -0.36 -1.15 16 23 C 0.11 1.24 5.96 -83.64 -0.50 0.74 16 24 N -0.40 -4.47 2.45 -60.96 -0.15 -4.62 16 25 C -0.01 -0.08 9.13 -16.65 -0.15 -0.24 16 26 C -0.20 -1.96 10.86 -39.76 -0.43 -2.39 16 27 C -0.20 -2.00 10.86 -39.76 -0.43 -2.44 16 28 C -0.01 -0.10 11.12 -16.64 -0.19 -0.28 16 29 H 0.08 0.49 7.79 -51.93 -0.40 0.09 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.07 0.61 6.63 -51.93 -0.34 0.27 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.15 1.50 5.87 -52.49 -0.31 1.19 16 34 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.09 1.19 4.19 -51.93 -0.22 0.97 16 36 H 0.03 0.69 6.68 -51.93 -0.35 0.34 16 37 H 0.08 1.68 5.96 -51.93 -0.31 1.37 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.42 7.94 -51.93 -0.41 1.00 16 41 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.14 1.91 7.98 -52.49 -0.42 1.49 16 44 H 0.16 1.32 7.44 -52.49 -0.39 0.93 16 45 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 47 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -31.82 371.39 -9.76 -41.58 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.57 Total: 2.65 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -4.00 Total: -1.79 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.34 Total: -53.48 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.53 Total: 15.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.82 -9.76 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744559445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.306 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds