Wall clock time and date at job start Tue Mar 31 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38265 * 119.88561 * 2 1 4 4 C 1.37977 * 120.21849 * 179.97438 * 3 2 1 5 5 C 1.39614 * 119.98573 * 359.72483 * 4 3 2 6 6 C 1.47855 * 120.11367 * 180.27419 * 5 4 3 7 7 O 1.21554 * 119.99940 * 214.11455 * 6 5 4 8 8 N 1.34782 * 120.00030 * 34.11885 * 6 5 4 9 9 C 1.46969 * 120.58991 * 4.96481 * 8 6 5 10 10 C 1.53811 * 108.39769 * 124.76047 * 9 8 6 11 11 N 1.46966 * 108.58101 * 49.63082 * 10 9 8 12 12 C 1.36936 * 120.59158 * 124.62487 * 11 10 9 13 13 H 1.08001 * 120.00376 * 210.96856 * 12 11 10 14 14 C 1.38815 * 120.00109 * 30.96793 * 12 11 10 15 15 N 1.31622 * 120.00137 * 215.01165 * 14 12 11 16 16 Si 1.86796 * 119.99812 * 35.01088 * 14 12 11 17 17 H 1.48496 * 109.47390 * 92.99832 * 16 14 12 18 18 H 1.48505 * 109.47038 * 212.99783 * 16 14 12 19 19 H 1.48505 * 109.47124 * 332.99247 * 16 14 12 20 20 C 1.46962 * 118.81433 * 304.65131 * 11 10 9 21 21 C 1.46966 * 120.59341 * 185.24136 * 8 6 5 22 22 C 1.39465 * 119.77206 * 0.57462 * 5 4 3 23 23 C 1.38590 * 119.78176 * 359.42489 * 22 5 4 24 24 N 1.40232 * 119.99199 * 180.30087 * 23 22 5 25 25 C 1.36560 * 125.66815 * 129.69224 * 24 23 22 26 26 C 1.34853 * 108.20301 * 179.83034 * 25 24 23 27 27 C 1.40942 * 107.46167 * 0.42473 * 26 25 24 28 28 C 1.34852 * 107.47097 * 359.73963 * 27 26 25 29 29 H 1.08994 * 109.47106 * 269.97410 * 1 2 3 30 30 H 1.08997 * 109.47029 * 29.97719 * 1 2 3 31 31 H 1.09004 * 109.46560 * 149.97841 * 1 2 3 32 32 H 1.08002 * 119.89088 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.00424 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.60407 * 244.53772 * 9 8 6 35 35 H 1.08993 * 109.61021 * 5.04819 * 9 8 6 36 36 H 1.09001 * 109.74130 * 289.84411 * 10 9 8 37 37 H 1.08996 * 109.53249 * 169.29748 * 10 9 8 38 38 H 0.97001 * 119.99825 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.60719 * 295.47786 * 20 11 10 40 40 H 1.08994 * 109.75244 * 175.05439 * 20 11 10 41 41 H 1.08996 * 109.61014 * 354.94704 * 21 8 6 42 42 H 1.09003 * 109.60447 * 115.28873 * 21 8 6 43 43 H 1.07993 * 120.10603 * 179.70048 * 22 5 4 44 44 H 1.08002 * 125.90082 * 0.02562 * 25 24 23 45 45 H 1.07992 * 126.27173 * 180.16276 * 26 25 24 46 46 H 1.08007 * 126.26640 * 179.71217 * 27 26 25 47 47 H 1.08001 * 125.90294 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5757 1.2068 0.0005 5 6 4.2805 0.0016 0.0069 6 6 5.7590 0.0069 0.0136 7 8 6.3725 -0.8640 -0.5718 8 7 6.4265 0.9774 0.6688 9 6 5.7017 1.9735 1.4704 10 6 6.2716 1.9549 2.8989 11 7 7.7367 2.0396 2.8197 12 6 8.4147 3.0261 3.4846 13 1 9.3387 3.4128 3.0808 14 6 7.9144 3.5292 4.6777 15 7 8.0705 4.8026 4.9720 16 14 7.0195 2.3990 5.8657 17 1 7.9838 1.8610 6.8586 18 1 5.9577 3.1618 6.5699 19 1 6.4056 1.2757 5.1128 20 6 8.4610 1.0469 2.0136 21 6 7.8915 1.0620 0.5896 22 6 3.5851 -1.2073 0.0005 23 6 2.1992 -1.2043 0.0000 24 7 1.4956 -2.4173 0.0000 25 6 0.4828 -2.7503 0.8534 26 6 0.0586 -3.9913 0.5397 27 6 0.8426 -4.4461 -0.5397 28 6 1.7133 -3.4641 -0.8496 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3632 -0.8898 -0.5142 32 1 1.6523 2.1320 0.0004 33 1 4.1103 2.1452 0.0001 34 1 5.8359 2.9628 1.0329 35 1 4.6414 1.7222 1.4946 36 1 5.9851 1.0290 3.3976 37 1 5.8855 2.8082 3.4564 38 1 7.7212 5.1540 5.8059 39 1 8.3304 0.0563 2.4493 40 1 9.5214 1.2975 1.9862 41 1 8.2777 0.2087 0.0321 42 1 8.1779 1.9866 0.0882 43 1 4.1249 -2.1427 0.0005 44 1 0.0876 -2.1263 1.6413 45 1 -0.7337 -4.5384 1.0288 46 1 0.7613 -5.4056 -1.0287 47 1 2.4549 -3.4994 -1.6339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744559445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:19 Heat of formation + Delta-G solvation = 83.314808 kcal Electronic energy + Delta-G solvation = -29327.538014 eV Core-core repulsion = 25477.383043 eV Total energy + Delta-G solvation = -3850.154970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.67183 -41.55971 -39.66372 -38.59415 -35.84424 -34.67242 -33.68168 -33.46272 -32.22306 -30.21941 -29.85549 -29.23734 -28.03933 -25.50685 -25.07588 -24.00353 -23.52821 -22.37553 -21.35625 -21.18684 -20.48958 -19.45597 -18.51368 -17.81917 -17.20611 -16.97117 -16.79727 -16.58844 -16.24507 -16.01467 -15.46273 -15.30581 -15.24070 -14.81856 -14.70559 -14.58556 -14.51621 -14.37824 -14.22649 -14.10799 -13.49321 -13.38723 -13.23580 -13.10750 -12.93619 -12.77416 -12.72272 -12.52337 -12.47733 -12.28708 -12.03111 -11.92117 -11.48111 -11.05188 -10.68713 -10.50484 -10.07083 -9.87720 -9.27306 -9.16538 -8.85323 -8.26004 -5.47120 -0.36972 -0.04279 1.26435 1.33365 1.45417 1.51594 1.59108 1.76039 1.97723 2.07896 2.42291 2.50581 2.93031 3.26490 3.34367 3.60816 3.74115 3.85324 3.96543 4.07623 4.09599 4.13385 4.26369 4.28188 4.35413 4.42873 4.52577 4.53196 4.58362 4.63262 4.69364 4.72173 4.72618 4.78504 4.83415 4.94744 4.97286 5.09148 5.13039 5.15145 5.23732 5.32716 5.36045 5.41718 5.60087 5.85160 5.99475 6.10856 6.22340 6.30208 6.48232 6.88268 6.95597 7.58383 8.03233 8.92469 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.003019 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.446922 B = 9273.144059 C = 9808.243320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.057 4.057 3 C -0.100 4.100 4 C -0.084 4.084 5 C -0.131 4.131 6 C 0.555 3.445 7 O -0.581 6.581 8 N -0.593 5.593 9 C 0.081 3.919 10 C 0.125 3.875 11 N -0.611 5.611 12 C -0.265 4.265 13 H 0.052 0.948 14 C -0.003 4.003 15 N -0.924 5.924 16 Si 0.896 3.104 17 H -0.303 1.303 18 H -0.291 1.291 19 H -0.241 1.241 20 C 0.131 3.869 21 C 0.105 3.895 22 C -0.073 4.073 23 C 0.100 3.900 24 N -0.405 5.405 25 C -0.013 4.013 26 C -0.207 4.207 27 C -0.202 4.202 28 C -0.032 4.032 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.028 0.972 37 H 0.067 0.933 38 H 0.264 0.736 39 H 0.023 0.977 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.120 0.880 44 H 0.180 0.820 45 H 0.156 0.844 46 H 0.152 0.848 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.973 -10.209 -11.737 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.059 4.059 3 C -0.118 4.118 4 C -0.102 4.102 5 C -0.135 4.135 6 C 0.345 3.655 7 O -0.463 6.463 8 N -0.323 5.323 9 C -0.042 4.042 10 C 0.000 4.000 11 N -0.336 5.336 12 C -0.394 4.394 13 H 0.069 0.931 14 C -0.202 4.202 15 N -0.567 5.567 16 Si 0.724 3.276 17 H -0.232 1.232 18 H -0.217 1.217 19 H -0.165 1.165 20 C 0.005 3.995 21 C -0.019 4.019 22 C -0.093 4.093 23 C 0.009 3.991 24 N -0.079 5.079 25 C -0.140 4.140 26 C -0.231 4.231 27 C -0.227 4.227 28 C -0.159 4.159 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.194 0.806 33 H 0.176 0.824 34 H 0.104 0.896 35 H 0.138 0.862 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.138 0.862 44 H 0.197 0.803 45 H 0.174 0.826 46 H 0.170 0.830 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.483 -10.240 -11.926 25.033 hybrid contribution 0.589 -0.523 1.082 1.338 sum -18.893 -10.763 -10.844 24.298 Atomic orbital electron populations 1.21006 0.88121 1.04271 1.04099 1.20375 0.98240 0.90866 0.96389 1.21326 0.92923 0.98606 0.98912 1.21899 0.95356 0.97323 0.95633 1.19597 0.91862 0.94838 1.07205 1.18643 0.87897 0.80633 0.78358 1.90721 1.70279 1.38100 1.47188 1.47969 1.07853 1.29103 1.47423 1.23113 0.97533 0.92034 0.91537 1.21858 0.83693 0.99308 0.95187 1.44392 1.01516 1.31645 1.56018 1.18666 1.08196 1.10505 1.02033 0.93075 1.25764 0.99562 0.96154 0.98705 1.70145 1.48862 1.12739 1.24957 0.86621 0.78077 0.81972 0.80970 1.23182 1.21748 1.16535 1.21433 0.96693 0.91373 0.90008 1.22085 0.78904 1.02739 0.98180 1.20936 0.92532 0.97822 0.98005 1.17539 0.89936 0.85266 1.06325 1.41570 1.28159 1.11106 1.27019 1.22314 0.93924 0.98888 0.98886 1.21262 1.04469 0.96036 1.01372 1.21243 0.99608 1.00193 1.01623 1.22245 1.05167 0.88635 0.99830 0.88862 0.88612 0.91720 0.80601 0.82403 0.89578 0.86209 0.95385 0.91440 0.92644 0.95862 0.90418 0.89177 0.90521 0.86234 0.80266 0.82616 0.83029 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 8.60 71.24 0.61 -0.66 16 2 C -0.06 -0.93 5.88 -19.70 -0.12 -1.04 16 3 C -0.10 -1.42 9.67 22.21 0.21 -1.21 16 4 C -0.08 -1.60 7.35 22.54 0.17 -1.44 16 5 C -0.13 -3.42 5.36 -20.10 -0.11 -3.53 16 6 C 0.55 18.05 7.40 86.79 0.64 18.69 16 7 O -0.58 -22.57 16.21 -3.89 -0.06 -22.63 16 8 N -0.59 -18.98 2.94 -820.54 -2.41 -21.40 16 9 C 0.08 2.40 4.98 86.56 0.43 2.83 16 10 C 0.13 4.86 4.57 86.56 0.40 5.26 16 11 N -0.61 -27.20 2.64 -697.36 -1.84 -29.04 16 12 C -0.27 -14.11 9.82 84.03 0.83 -13.29 16 13 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 14 C 0.00 -0.18 4.82 84.86 0.41 0.23 16 15 N -0.92 -54.27 13.97 21.65 0.30 -53.96 16 16 Si 0.90 42.47 26.66 68.60 1.83 44.29 16 17 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.24 -10.67 4.91 99.48 0.49 -10.18 16 20 C 0.13 5.00 6.67 86.42 0.58 5.57 16 21 C 0.10 3.47 6.60 86.41 0.57 4.04 16 22 C -0.07 -1.87 9.22 22.65 0.21 -1.67 16 23 C 0.10 2.15 5.96 38.04 0.23 2.38 16 24 N -0.41 -8.55 2.45 -346.78 -0.85 -9.40 16 25 C -0.01 -0.24 9.13 83.18 0.76 0.52 16 26 C -0.21 -3.72 10.86 22.15 0.24 -3.48 16 27 C -0.20 -3.90 10.86 22.15 0.24 -3.66 16 28 C -0.03 -0.68 11.12 83.18 0.92 0.25 16 29 H 0.09 0.76 7.79 -2.39 -0.02 0.74 16 30 H 0.10 0.66 8.08 -2.39 -0.02 0.64 16 31 H 0.06 0.86 6.63 -2.39 -0.02 0.85 16 32 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 33 H 0.16 2.64 5.87 -2.91 -0.02 2.62 16 34 H 0.09 2.43 8.10 -2.39 -0.02 2.41 16 35 H 0.12 2.83 4.19 -2.39 -0.01 2.82 16 36 H 0.03 1.13 6.68 -2.39 -0.02 1.11 16 37 H 0.07 2.77 5.96 -2.39 -0.01 2.76 16 38 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 2.90 7.94 -2.39 -0.02 2.88 16 41 H 0.09 2.95 6.99 -2.39 -0.02 2.93 16 42 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.12 3.44 7.98 -2.91 -0.02 3.41 16 44 H 0.18 2.40 7.44 -2.91 -0.02 2.38 16 45 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 46 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 47 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -70.01 371.39 4.95 -65.06 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.76 Total: 17.28 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 7.22 Total: 9.80 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -4.80 Total: -113.80 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.06 Total: -22.63 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.83 Total: 44.29 kcal Total: -70.01 4.95 -65.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744559445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.371 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds