Wall clock time and date at job start Tue Mar 31 2020 22:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 C 1.50700 * 120.00273 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47129 * 339.99380 * 6 5 4 8 8 N 1.46905 * 109.46817 * 219.99602 * 6 5 4 9 9 C 1.46899 * 110.99523 * 154.99481 * 8 6 5 10 10 C 1.50699 * 109.47112 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99894 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00617 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00320 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47224 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99774 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00014 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00223 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47291 * 89.99675 * 18 16 14 20 20 H 1.48493 * 109.47484 * 210.00188 * 18 16 14 21 21 H 1.48506 * 109.47086 * 329.99920 * 18 16 14 22 22 C 1.50700 * 109.47393 * 99.99591 * 6 5 4 23 23 C 1.38227 * 119.61561 * 125.00060 * 22 6 5 24 24 C 1.38627 * 119.15634 * 179.97438 * 23 22 6 25 25 C 1.38670 * 118.42218 * 0.02562 * 24 23 22 26 26 C 1.38178 * 119.16539 * 359.97438 * 25 24 23 27 27 N 1.31846 * 119.61626 * 304.72329 * 22 6 5 28 28 C 1.38238 * 119.99712 * 359.97124 * 5 4 3 29 29 C 1.38234 * 120.00028 * 359.97438 * 28 5 4 30 30 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 31 31 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 32 32 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 33 33 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 34 34 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 35 35 H 1.00903 * 111.00217 * 31.04642 * 8 6 5 36 36 H 1.09002 * 109.47783 * 300.00004 * 9 8 6 37 37 H 1.09006 * 109.47192 * 60.00574 * 9 8 6 38 38 H 0.96999 * 119.99478 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.46853 * 300.00101 * 13 12 10 40 40 H 1.08996 * 109.47160 * 59.99459 * 13 12 10 41 41 H 0.97006 * 120.00213 * 179.97438 * 17 16 14 42 42 H 1.07997 * 120.41919 * 359.97438 * 23 22 6 43 43 H 1.08001 * 120.78697 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.41753 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.61690 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.99691 * 179.97438 * 28 5 4 47 47 H 1.07999 * 119.99968 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 6 5.7787 -0.0001 0.0112 7 1 6.1434 0.9664 -0.3367 8 7 6.2716 -1.0591 -0.8797 9 6 7.6208 -0.7482 -1.3706 10 6 8.0922 -1.8546 -2.2787 11 8 7.3752 -2.8084 -2.4951 12 7 9.3112 -1.7847 -2.8495 13 6 9.7692 -2.8600 -3.7327 14 6 11.1533 -2.5412 -4.2363 15 1 11.6430 -1.6290 -3.9289 16 6 11.7949 -3.4145 -5.0887 17 7 13.0026 -3.1360 -5.5286 18 14 10.9483 -4.9927 -5.6199 19 1 10.1708 -4.7440 -6.8603 20 1 11.9693 -6.0397 -5.8772 21 1 10.0317 -5.4489 -4.5442 22 6 6.2758 -0.2501 1.4118 23 6 7.1524 -1.2920 1.6497 24 6 7.6040 -1.5130 2.9415 25 6 7.1547 -0.6744 3.9504 26 6 6.2783 0.3468 3.6367 27 7 5.8737 0.5310 2.3950 28 6 3.5805 -1.1972 0.0001 29 6 2.1981 -1.1972 -0.0045 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 1.6582 2.1325 0.0004 34 1 4.1205 2.1324 0.0100 35 1 5.6341 -1.2123 -1.6467 36 1 7.5990 0.1913 -1.9231 37 1 8.3030 -0.6569 -0.5254 38 1 9.8848 -1.0220 -2.6761 39 1 9.7906 -3.7995 -3.1804 40 1 9.0873 -2.9511 -4.5781 41 1 13.4542 -3.7506 -6.1280 42 1 7.4812 -1.9258 0.8394 43 1 8.2896 -2.3192 3.1571 44 1 7.4862 -0.8171 4.9683 45 1 5.9233 1.0040 4.4168 46 1 4.1205 -2.1325 -0.0005 47 1 1.6581 -2.1325 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791633936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:49 Heat of formation + Delta-G solvation = 27.617588 kcal Electronic energy + Delta-G solvation = -28123.518573 eV Core-core repulsion = 24270.948390 eV Total energy + Delta-G solvation = -3852.570183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.68301 -39.39234 -38.99027 -36.43873 -34.31502 -33.13951 -32.40776 -32.34655 -31.26737 -31.01511 -29.08879 -27.91014 -25.86585 -24.60198 -23.52632 -22.80359 -22.19642 -21.70865 -20.55224 -19.92742 -17.69262 -17.21415 -16.71303 -16.34457 -15.91604 -15.70588 -15.41948 -15.37658 -15.14690 -14.95264 -14.32469 -14.24139 -14.03063 -13.86696 -13.68022 -13.54922 -13.39276 -13.14455 -12.83912 -12.71517 -12.49591 -12.38399 -12.28024 -12.12301 -11.72153 -11.57230 -11.24096 -11.07108 -11.03714 -10.78383 -9.99454 -9.93623 -9.59017 -9.52359 -9.27593 -9.06262 -8.98724 -8.80260 -8.66764 -8.60730 -8.17838 -6.23665 -4.26183 0.97624 1.21974 1.22438 1.33926 3.17333 3.25375 3.31785 3.40314 3.46823 3.58859 3.73607 4.04640 4.31400 4.47429 4.54921 4.71167 4.72270 4.75772 4.84514 4.94045 4.98811 5.07645 5.11603 5.15723 5.19702 5.30461 5.35021 5.36145 5.40210 5.44812 5.46872 5.58949 5.62943 5.75919 5.92758 5.98068 6.04601 6.16016 6.28558 6.41412 6.48232 6.61564 6.70123 6.81944 6.90952 7.04468 7.18525 7.20654 7.36624 7.90449 8.10557 8.48020 8.72575 8.89368 9.36319 10.88215 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.002585 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.642903 B =10827.197029 C =12411.991723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.125 4.125 4 C -0.090 4.090 5 C -0.084 4.084 6 C 0.181 3.819 7 H 0.073 0.927 8 N -0.663 5.663 9 C 0.033 3.967 10 C 0.500 3.500 11 O -0.544 6.544 12 N -0.706 5.706 13 C 0.222 3.778 14 C -0.544 4.544 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.892 5.892 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.260 1.260 22 C 0.138 3.862 23 C -0.145 4.145 24 C -0.080 4.080 25 C -0.178 4.178 26 C 0.094 3.906 27 N -0.478 5.478 28 C -0.092 4.092 29 C -0.124 4.124 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.363 0.637 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.396 0.604 39 H 0.025 0.975 40 H 0.020 0.980 41 H 0.268 0.732 42 H 0.152 0.848 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.152 0.848 46 H 0.132 0.868 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.776 9.383 17.356 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.143 4.143 4 C -0.109 4.109 5 C -0.085 4.085 6 C 0.070 3.930 7 H 0.091 0.909 8 N -0.298 5.298 9 C -0.100 4.100 10 C 0.284 3.716 11 O -0.422 6.422 12 N -0.355 5.355 13 C 0.100 3.900 14 C -0.582 4.582 15 H 0.097 0.903 16 C -0.127 4.127 17 N -0.529 5.529 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.185 1.185 22 C 0.000 4.000 23 C -0.165 4.165 24 C -0.106 4.106 25 C -0.198 4.198 26 C -0.064 4.064 27 N -0.187 5.187 28 C -0.110 4.110 29 C -0.143 4.143 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.185 0.815 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.230 0.770 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.169 0.831 43 H 0.151 0.849 44 H 0.148 0.852 45 H 0.169 0.831 46 H 0.149 0.851 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.458 8.892 17.365 28.269 hybrid contribution 0.590 -0.458 -0.568 0.939 sum -19.868 8.434 16.797 27.349 Atomic orbital electron populations 1.20786 0.91444 1.02591 1.02242 1.19932 0.95934 0.93328 0.99478 1.20936 0.93999 0.97394 1.01997 1.20931 0.94030 0.97323 0.98570 1.19500 0.93264 0.93706 1.02036 1.18993 0.90777 0.93996 0.89196 0.90932 1.60033 1.03291 1.42720 1.23740 1.22012 0.92198 0.96798 0.98959 1.20308 0.82482 0.87624 0.81229 1.90669 1.55214 1.33993 1.62313 1.46169 1.16115 1.25430 1.47828 1.19479 0.95232 0.86372 0.88943 1.21089 0.98676 1.08811 1.29629 0.90267 1.24801 0.94657 0.98077 0.95120 1.69883 1.12809 1.37289 1.32953 0.86810 0.79688 0.83167 0.79984 1.19867 1.20910 1.18470 1.20910 0.93364 0.91665 0.94085 1.22205 0.97636 0.98624 0.98002 1.21685 0.97848 0.98258 0.92856 1.22123 0.99911 0.97353 1.00442 1.22620 0.94384 0.96102 0.93258 1.67294 1.23500 1.27680 1.00207 1.21103 0.93943 0.98213 0.97784 1.21018 0.94168 0.97459 1.01608 0.91231 0.91662 0.91698 0.86246 0.86094 0.81476 0.92009 0.88198 0.77042 0.95664 0.96202 0.92248 0.83086 0.84909 0.85161 0.83097 0.85059 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.09 -0.84 5.88 -104.63 -0.62 -1.45 16 3 C -0.13 -1.21 9.70 -39.58 -0.38 -1.60 16 4 C -0.09 -0.94 9.67 -39.58 -0.38 -1.32 16 5 C -0.08 -0.96 4.50 -104.62 -0.47 -1.43 16 6 C 0.18 2.05 2.70 -70.01 -0.19 1.86 16 7 H 0.07 0.78 7.66 -51.93 -0.40 0.38 16 8 N -0.66 -8.21 4.18 -110.45 -0.46 -8.67 16 9 C 0.03 0.41 5.30 -4.98 -0.03 0.39 16 10 C 0.50 8.87 7.87 -10.98 -0.09 8.79 16 11 O -0.54 -11.68 16.20 5.56 0.09 -11.59 16 12 N -0.71 -13.64 5.55 -61.47 -0.34 -13.98 16 13 C 0.22 5.33 4.50 -5.20 -0.02 5.31 16 14 C -0.54 -14.70 9.83 -34.44 -0.34 -15.04 16 15 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 17 N -0.89 -26.28 13.96 55.43 0.77 -25.50 16 18 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 22 C 0.14 1.67 6.10 -82.59 -0.50 1.17 16 23 C -0.14 -1.72 8.45 -39.44 -0.33 -2.06 16 24 C -0.08 -0.82 10.18 -39.28 -0.40 -1.22 16 25 C -0.18 -1.63 10.11 -39.44 -0.40 -2.03 16 26 C 0.09 0.94 11.18 -17.55 -0.20 0.74 16 27 N -0.48 -5.76 10.02 -9.47 -0.09 -5.85 16 28 C -0.09 -1.07 9.00 -39.58 -0.36 -1.43 16 29 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.12 1.12 8.04 -52.49 -0.42 0.70 16 35 H 0.36 4.74 7.69 -39.29 -0.30 4.44 16 36 H 0.06 0.67 8.06 -51.93 -0.42 0.26 16 37 H 0.10 1.15 6.65 -51.93 -0.35 0.81 16 38 H 0.40 6.70 8.32 -40.82 -0.34 6.36 16 39 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 40 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.15 1.94 5.91 -52.49 -0.31 1.63 16 43 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 44 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 46 H 0.13 1.59 7.72 -52.49 -0.41 1.19 16 47 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -32.67 393.86 -10.26 -42.92 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.66 Total: 9.54 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -4.83 Total: -9.39 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.12 Total: -54.01 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.67 -10.26 -42.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791633936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.541 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds