Wall clock time and date at job start Tue Mar 31 2020 22:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 C 1.50700 * 120.00273 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47129 * 339.99380 * 6 5 4 8 8 N 1.46905 * 109.46817 * 219.99602 * 6 5 4 9 9 C 1.46899 * 110.99523 * 154.99481 * 8 6 5 10 10 C 1.50699 * 109.47112 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99894 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00617 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00320 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47224 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99774 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00014 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00223 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47291 * 89.99675 * 18 16 14 20 20 H 1.48493 * 109.47484 * 210.00188 * 18 16 14 21 21 H 1.48506 * 109.47086 * 329.99920 * 18 16 14 22 22 C 1.50700 * 109.47393 * 99.99591 * 6 5 4 23 23 C 1.38227 * 119.61561 * 125.00060 * 22 6 5 24 24 C 1.38627 * 119.15634 * 179.97438 * 23 22 6 25 25 C 1.38670 * 118.42218 * 0.02562 * 24 23 22 26 26 C 1.38178 * 119.16539 * 359.97438 * 25 24 23 27 27 N 1.31846 * 119.61626 * 304.72329 * 22 6 5 28 28 C 1.38238 * 119.99712 * 359.97124 * 5 4 3 29 29 C 1.38234 * 120.00028 * 359.97438 * 28 5 4 30 30 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 31 31 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 32 32 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 33 33 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 34 34 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 35 35 H 1.00903 * 111.00217 * 31.04642 * 8 6 5 36 36 H 1.09002 * 109.47783 * 300.00004 * 9 8 6 37 37 H 1.09006 * 109.47192 * 60.00574 * 9 8 6 38 38 H 0.96999 * 119.99478 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.46853 * 300.00101 * 13 12 10 40 40 H 1.08996 * 109.47160 * 59.99459 * 13 12 10 41 41 H 0.97006 * 120.00213 * 179.97438 * 17 16 14 42 42 H 1.07997 * 120.41919 * 359.97438 * 23 22 6 43 43 H 1.08001 * 120.78697 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.41753 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.61690 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.99691 * 179.97438 * 28 5 4 47 47 H 1.07999 * 119.99968 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 6 5.7787 -0.0001 0.0112 7 1 6.1434 0.9664 -0.3367 8 7 6.2716 -1.0591 -0.8797 9 6 7.6208 -0.7482 -1.3706 10 6 8.0922 -1.8546 -2.2787 11 8 7.3752 -2.8084 -2.4951 12 7 9.3112 -1.7847 -2.8495 13 6 9.7692 -2.8600 -3.7327 14 6 11.1533 -2.5412 -4.2363 15 1 11.6430 -1.6290 -3.9289 16 6 11.7949 -3.4145 -5.0887 17 7 13.0026 -3.1360 -5.5286 18 14 10.9483 -4.9927 -5.6199 19 1 10.1708 -4.7440 -6.8603 20 1 11.9693 -6.0397 -5.8772 21 1 10.0317 -5.4489 -4.5442 22 6 6.2758 -0.2501 1.4118 23 6 7.1524 -1.2920 1.6497 24 6 7.6040 -1.5130 2.9415 25 6 7.1547 -0.6744 3.9504 26 6 6.2783 0.3468 3.6367 27 7 5.8737 0.5310 2.3950 28 6 3.5805 -1.1972 0.0001 29 6 2.1981 -1.1972 -0.0045 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 1.6582 2.1325 0.0004 34 1 4.1205 2.1324 0.0100 35 1 5.6341 -1.2123 -1.6467 36 1 7.5990 0.1913 -1.9231 37 1 8.3030 -0.6569 -0.5254 38 1 9.8848 -1.0220 -2.6761 39 1 9.7906 -3.7995 -3.1804 40 1 9.0873 -2.9511 -4.5781 41 1 13.4542 -3.7506 -6.1280 42 1 7.4812 -1.9258 0.8394 43 1 8.2896 -2.3192 3.1571 44 1 7.4862 -0.8171 4.9683 45 1 5.9233 1.0040 4.4168 46 1 4.1205 -2.1325 -0.0005 47 1 1.6581 -2.1325 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791633936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:48 Heat of formation + Delta-G solvation = 6.740077 kcal Electronic energy + Delta-G solvation = -28124.423889 eV Core-core repulsion = 24270.948390 eV Total energy + Delta-G solvation = -3853.475500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52813 -40.48110 -40.12484 -37.40549 -36.10169 -34.40946 -33.96540 -33.15557 -32.11285 -31.79574 -30.49038 -29.17540 -26.92779 -25.52993 -24.32025 -23.92941 -23.51838 -22.71552 -21.50049 -21.32598 -19.27500 -18.24925 -17.94112 -17.38271 -17.11878 -16.93012 -16.60053 -16.32867 -16.10075 -15.99429 -15.77375 -15.39429 -15.02396 -14.84600 -14.70253 -14.49126 -14.44790 -14.25786 -14.13558 -13.89452 -13.86466 -13.44064 -13.15400 -13.04986 -12.93266 -12.74906 -12.65098 -12.37658 -11.99834 -11.93641 -11.82170 -11.65391 -10.92046 -10.84003 -10.71316 -10.40428 -9.93210 -9.85240 -9.78056 -9.57876 -9.39673 -8.40004 -6.46852 0.18936 0.42021 0.44506 0.54562 1.32640 1.35191 1.47489 1.73300 2.24545 2.28577 2.80201 2.90628 2.95497 2.97824 3.58055 3.74192 3.87441 3.96356 3.99981 4.08643 4.11587 4.18331 4.23415 4.31054 4.33798 4.40848 4.43995 4.57892 4.63567 4.71343 4.79374 4.84688 4.89999 4.94975 4.99152 5.04083 5.20324 5.23627 5.26760 5.29920 5.37426 5.49563 5.52188 5.58320 5.73234 5.82632 5.86623 6.09535 6.14634 6.20813 6.54512 6.86012 7.10217 7.16025 7.42118 8.74657 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.002585 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.642903 B =10827.197029 C =12411.991723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.098 4.098 5 C -0.093 4.093 6 C 0.188 3.812 7 H 0.080 0.920 8 N -0.669 5.669 9 C 0.048 3.952 10 C 0.502 3.498 11 O -0.581 6.581 12 N -0.706 5.706 13 C 0.234 3.766 14 C -0.546 4.546 15 H 0.060 0.940 16 C 0.025 3.975 17 N -0.931 5.931 18 Si 0.937 3.063 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.260 1.260 22 C 0.126 3.874 23 C -0.162 4.162 24 C -0.088 4.088 25 C -0.172 4.172 26 C 0.086 3.914 27 N -0.496 5.496 28 C -0.108 4.108 29 C -0.136 4.136 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.358 0.642 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.408 0.592 39 H 0.012 0.988 40 H 0.011 0.989 41 H 0.272 0.728 42 H 0.137 0.863 43 H 0.148 0.852 44 H 0.161 0.839 45 H 0.178 0.822 46 H 0.117 0.883 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.384 10.243 18.814 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.116 4.116 5 C -0.094 4.094 6 C 0.077 3.923 7 H 0.098 0.902 8 N -0.303 5.303 9 C -0.083 4.083 10 C 0.289 3.711 11 O -0.461 6.461 12 N -0.357 5.357 13 C 0.110 3.890 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.175 4.175 17 N -0.570 5.570 18 Si 0.761 3.239 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.184 1.184 22 C -0.012 4.012 23 C -0.182 4.182 24 C -0.114 4.114 25 C -0.192 4.192 26 C -0.072 4.072 27 N -0.205 5.205 28 C -0.126 4.126 29 C -0.154 4.154 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.179 0.821 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.244 0.756 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.081 0.919 42 H 0.154 0.846 43 H 0.166 0.834 44 H 0.179 0.821 45 H 0.195 0.805 46 H 0.135 0.865 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.068 9.783 18.842 30.623 hybrid contribution 1.070 -0.665 -0.918 1.559 sum -20.998 9.118 17.924 29.075 Atomic orbital electron populations 1.20828 0.89503 1.03542 1.03006 1.20269 0.97445 0.92948 0.98517 1.21249 0.93879 0.98374 1.01163 1.21122 0.94626 0.97358 0.98503 1.19541 0.93243 0.93977 1.02636 1.18944 0.90893 0.93654 0.88760 0.90195 1.59984 1.02901 1.43764 1.23640 1.21904 0.92629 0.95313 0.98498 1.21092 0.81196 0.88147 0.80687 1.90650 1.56041 1.35875 1.63538 1.46006 1.17166 1.24898 1.47629 1.19063 0.93476 0.87292 0.89187 1.21302 0.99816 1.08000 1.29241 0.92235 1.25604 0.95224 1.01300 0.95350 1.69985 1.14252 1.38770 1.34022 0.85856 0.78823 0.79537 0.79662 1.19047 1.19931 1.18434 1.20964 0.93737 0.92039 0.94442 1.22155 0.98619 0.98915 0.98523 1.21959 0.97977 0.98898 0.92548 1.22444 0.98899 0.96271 1.01563 1.23163 0.94173 0.96649 0.93182 1.67308 1.24133 1.28121 1.00979 1.21083 0.94587 0.97886 0.99067 1.21224 0.93904 0.98518 1.01729 0.90449 0.91075 0.90437 0.84087 0.85056 0.82060 0.89390 0.86640 0.75605 0.97011 0.97105 0.91884 0.84568 0.83425 0.82143 0.80518 0.86511 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.23 0.71 -0.64 16 2 C -0.09 -1.65 5.88 -19.87 -0.12 -1.77 16 3 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 4 C -0.10 -1.93 9.67 22.27 0.22 -1.72 16 5 C -0.09 -2.08 4.50 -19.87 -0.09 -2.17 16 6 C 0.19 4.15 2.70 43.42 0.12 4.27 16 7 H 0.08 1.61 7.66 -2.39 -0.02 1.60 16 8 N -0.67 -16.48 4.18 -503.36 -2.10 -18.58 16 9 C 0.05 1.18 5.30 85.56 0.45 1.63 16 10 C 0.50 17.71 7.87 87.66 0.69 18.40 16 11 O -0.58 -25.17 16.20 -3.04 -0.05 -25.22 16 12 N -0.71 -27.19 5.55 -466.79 -2.59 -29.78 16 13 C 0.23 11.29 4.50 85.63 0.38 11.68 16 14 C -0.55 -29.83 9.83 25.60 0.25 -29.58 16 15 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 16 C 0.03 1.43 5.47 84.65 0.46 1.90 16 17 N -0.93 -55.44 13.96 21.45 0.30 -55.15 16 18 Si 0.94 43.96 27.47 68.60 1.88 45.84 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 22 C 0.13 2.97 6.10 42.55 0.26 3.23 16 23 C -0.16 -3.80 8.45 22.36 0.19 -3.61 16 24 C -0.09 -1.69 10.18 22.47 0.23 -1.46 16 25 C -0.17 -2.75 10.11 22.36 0.23 -2.52 16 26 C 0.09 1.53 11.18 84.67 0.95 2.48 16 27 N -0.50 -11.34 10.02 -183.89 -1.84 -13.18 16 28 C -0.11 -2.54 9.00 22.27 0.20 -2.34 16 29 C -0.14 -2.80 9.70 22.27 0.22 -2.58 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 32 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.13 2.23 8.04 -2.91 -0.02 2.21 16 35 H 0.36 9.46 7.69 -89.69 -0.69 8.77 16 36 H 0.09 1.74 8.06 -2.39 -0.02 1.72 16 37 H 0.12 2.53 6.65 -2.38 -0.02 2.51 16 38 H 0.41 13.66 8.32 -92.71 -0.77 12.88 16 39 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 40 H 0.01 0.55 7.57 -2.39 -0.02 0.54 16 41 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 42 H 0.14 3.54 5.91 -2.91 -0.02 3.52 16 43 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 44 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 45 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 46 H 0.12 3.00 7.72 -2.91 -0.02 2.98 16 47 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -70.85 393.86 0.65 -70.20 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: -0.52 Total: 32.72 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 5.57 Total: -6.86 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -6.24 Total: -116.68 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Total: -70.85 0.65 -70.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791633936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.940 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds