Wall clock time and date at job start Tue Mar 31 2020 23:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34630 * 117.00028 * 2 1 4 4 O 1.21514 * 120.00530 * 359.97438 * 3 2 1 5 5 N 1.34786 * 120.00005 * 179.97438 * 3 2 1 6 6 C 1.46506 * 119.99548 * 0.02562 * 5 3 2 7 7 C 1.46499 * 120.00024 * 179.97438 * 5 3 2 8 8 C 1.52990 * 109.47304 * 269.99991 * 7 5 3 9 9 N 1.46499 * 109.47304 * 179.97438 * 8 7 5 10 10 C 1.34777 * 120.00195 * 179.97438 * 9 8 7 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99726 * 180.27548 * 10 9 8 13 13 C 1.40196 * 119.99786 * 179.72659 * 12 10 9 14 14 C 1.40403 * 125.97362 * 359.72037 * 13 12 10 15 15 C 1.35241 * 107.87032 * 179.83093 * 14 13 12 16 16 C 1.50704 * 126.07402 * 180.16205 * 15 14 13 17 17 N 1.34964 * 107.85500 * 0.42559 * 15 14 13 18 18 C 1.46503 * 125.97580 * 179.71183 * 17 15 14 19 19 C 1.50699 * 109.47232 * 270.00070 * 18 17 15 20 20 H 1.08004 * 119.99852 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00303 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00064 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99863 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47161 * 89.99998 * 23 21 19 25 25 H 1.48501 * 109.47106 * 210.00045 * 23 21 19 26 26 H 1.48498 * 109.47068 * 329.99836 * 23 21 19 27 27 N 1.31207 * 125.97268 * 180.02562 * 13 12 10 28 28 H 1.09009 * 109.46753 * 60.00131 * 1 2 3 29 29 H 1.08997 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47611 * 300.00482 * 1 2 3 31 31 H 1.08999 * 109.47061 * 269.99649 * 6 5 3 32 32 H 1.09000 * 109.47129 * 30.00228 * 6 5 3 33 33 H 1.08997 * 109.46637 * 149.99795 * 6 5 3 34 34 H 1.09006 * 109.46638 * 150.00280 * 7 5 3 35 35 H 1.09002 * 109.47196 * 30.00810 * 7 5 3 36 36 H 1.08998 * 109.47186 * 60.00250 * 8 7 5 37 37 H 1.09002 * 109.47663 * 300.00533 * 8 7 5 38 38 H 0.97000 * 120.00069 * 0.02562 * 9 8 7 39 39 H 0.97000 * 120.00483 * 359.73178 * 12 10 9 40 40 H 1.08001 * 126.06561 * 359.97438 * 14 13 12 41 41 H 1.09000 * 109.46414 * 270.31468 * 16 15 14 42 42 H 1.08994 * 109.47042 * 30.31368 * 16 15 14 43 43 H 1.08993 * 109.47184 * 150.31712 * 16 15 14 44 44 H 1.09001 * 109.47222 * 29.99739 * 18 17 15 45 45 H 1.08997 * 109.47398 * 150.00005 * 18 17 15 46 46 H 0.97000 * 120.00157 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2070 0.0413 0.0005 7 6 4.0743 2.5754 0.0000 8 6 4.3065 3.0289 -1.4426 9 7 4.9710 4.3345 -1.4432 10 6 5.2778 4.9340 -2.6106 11 8 5.0026 4.3914 -3.6634 12 7 5.8942 6.1326 -2.6110 13 6 6.2185 6.7536 -3.8254 14 6 5.9660 6.2401 -5.1076 15 6 6.4239 7.1362 -6.0111 16 6 6.3581 6.9975 -7.5103 17 7 6.9556 8.1741 -5.3316 18 6 7.5712 9.3648 -5.9227 19 6 9.0455 9.1227 -6.1202 20 1 9.4803 8.1762 -5.8344 21 6 9.8391 10.1088 -6.6667 22 7 11.1257 9.8976 -6.8385 23 14 9.0869 11.7455 -7.1617 24 1 9.1426 12.6838 -6.0121 25 1 9.8478 12.3150 -8.3028 26 1 7.6725 11.5388 -7.5639 27 7 6.8162 7.9136 -3.9624 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.4046 -0.2636 1.0282 32 1 3.6587 -0.7479 -0.5137 33 1 5.1515 0.2214 -0.5129 34 1 5.0321 2.4953 0.5142 35 1 3.4461 3.3035 0.5132 36 1 3.3488 3.1089 -1.9569 37 1 4.9346 2.3008 -1.9559 38 1 5.1909 4.7671 -0.6033 39 1 6.1135 6.5655 -1.7712 40 1 5.4884 5.2979 -5.3324 41 1 7.2560 6.4937 -7.8682 42 1 5.4800 6.4123 -7.7828 43 1 6.2910 7.9863 -7.9640 44 1 7.1054 9.5748 -6.8856 45 1 7.4289 10.2160 -5.2570 46 1 11.6841 10.5916 -7.2227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822281017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:15 Heat of formation + Delta-G solvation = -12.324361 kcal Electronic energy + Delta-G solvation = -28455.626522 eV Core-core repulsion = 24190.475063 eV Total energy + Delta-G solvation = -4265.151459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00398 -40.78027 -39.66462 -37.71089 -36.21837 -35.08267 -34.61570 -33.27518 -31.58430 -31.09837 -29.95502 -28.18550 -27.19144 -26.63712 -26.35082 -24.00642 -22.61519 -21.53468 -21.03624 -19.92118 -19.58137 -18.56974 -17.89599 -17.47630 -17.10317 -17.06186 -16.43628 -15.88219 -15.71697 -15.20069 -14.84713 -14.78938 -14.48354 -14.40099 -14.15166 -13.97173 -13.67951 -13.30655 -13.15018 -12.87653 -12.60282 -12.54169 -12.45299 -12.38029 -12.29799 -11.91694 -11.79957 -11.54903 -11.20888 -11.18415 -10.98172 -10.78726 -10.55825 -10.08252 -9.94508 -9.72663 -9.56948 -9.39299 -9.28855 -8.76999 -7.95560 -7.41733 -6.24993 -4.27828 1.57237 2.30418 2.43264 2.60054 3.06958 3.16598 3.22573 3.24010 3.38296 3.59958 3.80618 4.22527 4.27220 4.41173 4.46146 4.65398 4.73399 4.81477 4.91251 5.01804 5.03694 5.07503 5.27029 5.34417 5.40008 5.53796 5.64545 5.76380 5.83604 5.86657 6.07274 6.16616 6.21479 6.38918 6.47640 6.50508 6.62914 6.75260 6.79291 7.03848 7.30642 7.47813 7.79295 7.88254 7.90615 8.33211 8.56331 8.62307 8.80698 9.30368 10.87545 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.001721 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.972717 B =16268.714975 C =16463.666928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.369 6.369 3 C 0.647 3.353 4 O -0.565 6.565 5 N -0.595 5.595 6 C 0.081 3.919 7 C 0.121 3.879 8 C 0.124 3.876 9 N -0.742 5.742 10 C 0.715 3.285 11 O -0.564 6.564 12 N -0.643 5.643 13 C 0.287 3.713 14 C -0.286 4.286 15 C 0.095 3.905 16 C -0.085 4.085 17 N -0.318 5.318 18 C 0.232 3.768 19 C -0.540 4.540 20 H 0.081 0.919 21 C 0.079 3.921 22 N -0.887 5.887 23 Si 0.874 3.126 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.264 1.264 27 N -0.321 5.321 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.398 0.602 39 H 0.407 0.593 40 H 0.162 0.838 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.255 -19.697 14.927 30.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.283 6.283 3 C 0.401 3.599 4 O -0.453 6.453 5 N -0.336 5.336 6 C -0.061 4.061 7 C -0.002 4.002 8 C -0.002 4.002 9 N -0.399 5.399 10 C 0.414 3.586 11 O -0.439 6.439 12 N -0.293 5.293 13 C 0.033 3.967 14 C -0.317 4.317 15 C -0.036 4.036 16 C -0.143 4.143 17 N -0.100 5.100 18 C 0.113 3.887 19 C -0.578 4.578 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.524 5.524 23 Si 0.700 3.300 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.189 1.189 27 N -0.152 5.152 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.232 0.768 39 H 0.242 0.758 40 H 0.179 0.821 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.065 -18.771 14.449 29.195 hybrid contribution -0.271 0.705 0.275 0.804 sum -17.336 -18.065 14.724 29.047 Atomic orbital electron populations 1.23236 0.74160 1.03600 1.02925 1.86235 1.24335 1.30827 1.86883 1.18090 0.83145 0.82304 0.76316 1.91038 1.64171 1.34891 1.55196 1.46396 1.02404 1.08123 1.76650 1.21873 0.96244 0.85563 1.02463 1.21594 0.98350 0.83572 0.96654 1.21514 0.98338 0.83552 0.96777 1.44750 1.65914 1.22093 1.07187 1.15539 0.78607 0.80237 0.84184 1.90885 1.58459 1.64917 1.29600 1.41354 1.61501 1.19514 1.06911 1.18638 0.99512 0.92962 0.85593 1.21250 1.16991 1.04436 0.89027 1.21050 0.97504 0.89278 0.95791 1.20349 1.02942 1.02964 0.88044 1.48479 1.43165 1.16990 1.01405 1.19988 0.94652 0.80878 0.93204 1.21187 0.89867 1.03620 1.43134 0.90115 1.24806 0.94675 0.98295 0.94765 1.69873 1.04605 1.34375 1.43551 0.86889 0.79797 0.84272 0.79030 1.19670 1.20560 1.18883 1.77249 1.25550 1.15973 0.96387 0.91652 0.87845 0.91783 0.92095 0.90140 0.90310 0.88754 0.88581 0.90878 0.91005 0.76827 0.75814 0.82053 0.90094 0.90664 0.91143 0.93230 0.93689 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 10.56 101.05 1.07 1.37 16 2 O -0.37 -2.99 9.39 -40.30 -0.38 -3.37 16 3 C 0.65 6.35 8.40 54.06 0.45 6.80 16 4 O -0.56 -7.31 15.71 -19.28 -0.30 -7.61 16 5 N -0.60 -4.28 2.87 -187.41 -0.54 -4.82 16 6 C 0.08 0.35 10.44 59.85 0.63 0.97 16 7 C 0.12 0.76 5.52 -4.05 -0.02 0.74 16 8 C 0.12 1.12 6.00 -4.05 -0.02 1.10 16 9 N -0.74 -7.17 5.56 -65.23 -0.36 -7.53 16 10 C 0.72 10.58 8.53 -86.92 -0.74 9.84 16 11 O -0.56 -10.44 13.47 5.28 0.07 -10.37 16 12 N -0.64 -9.95 5.46 -15.51 -0.08 -10.03 16 13 C 0.29 5.86 8.11 -154.36 -1.25 4.61 16 14 C -0.29 -5.96 9.52 -39.83 -0.38 -6.34 16 15 C 0.09 1.99 6.93 -82.28 -0.57 1.42 16 16 C -0.08 -1.44 10.11 36.01 0.36 -1.08 16 17 N -0.32 -7.47 3.59 -58.32 -0.21 -7.68 16 18 C 0.23 5.63 5.06 -5.19 -0.03 5.60 16 19 C -0.54 -15.20 9.94 -34.44 -0.34 -15.54 16 20 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 21 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 22 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 23 Si 0.87 20.25 27.47 -169.99 -4.67 15.58 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 27 N -0.32 -7.36 12.59 31.44 0.40 -6.97 16 28 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.35 7.38 -51.93 -0.38 -0.03 16 33 H 0.08 0.25 8.07 -51.93 -0.42 -0.17 16 34 H 0.09 0.33 8.07 -51.93 -0.42 -0.08 16 35 H 0.10 0.68 7.42 -51.93 -0.39 0.29 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.40 2.46 8.49 -40.82 -0.35 2.12 16 39 H 0.41 4.91 8.84 -40.82 -0.36 4.55 16 40 H 0.16 3.32 5.91 -52.49 -0.31 3.01 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.16 7.07 -51.93 -0.37 0.79 16 44 H 0.05 1.12 6.10 -51.93 -0.32 0.81 16 45 H 0.05 1.08 7.57 -51.93 -0.39 0.69 16 46 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -38.17 391.81 -7.02 -45.19 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.67 Total: 5.74 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -0.94 Total: 11.60 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.03 Total: -62.65 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.61 Total: -21.36 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.17 -7.02 -45.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822281017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.866 kcal (2) G-P(sol) polarization free energy of solvation -38.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds