Wall clock time and date at job start Tue Mar 31 2020 23:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34630 * 117.00028 * 2 1 4 4 O 1.21514 * 120.00530 * 359.97438 * 3 2 1 5 5 N 1.34786 * 120.00005 * 179.97438 * 3 2 1 6 6 C 1.46506 * 119.99548 * 0.02562 * 5 3 2 7 7 C 1.46499 * 120.00024 * 179.97438 * 5 3 2 8 8 C 1.52990 * 109.47304 * 269.99991 * 7 5 3 9 9 N 1.46499 * 109.47304 * 179.97438 * 8 7 5 10 10 C 1.34777 * 120.00195 * 179.97438 * 9 8 7 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99726 * 180.27548 * 10 9 8 13 13 C 1.40196 * 119.99786 * 179.72659 * 12 10 9 14 14 C 1.40403 * 125.97362 * 359.72037 * 13 12 10 15 15 C 1.35241 * 107.87032 * 179.83093 * 14 13 12 16 16 C 1.50704 * 126.07402 * 180.16205 * 15 14 13 17 17 N 1.34964 * 107.85500 * 0.42559 * 15 14 13 18 18 C 1.46503 * 125.97580 * 179.71183 * 17 15 14 19 19 C 1.50699 * 109.47232 * 270.00070 * 18 17 15 20 20 H 1.08004 * 119.99852 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00303 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00064 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99863 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47161 * 89.99998 * 23 21 19 25 25 H 1.48501 * 109.47106 * 210.00045 * 23 21 19 26 26 H 1.48498 * 109.47068 * 329.99836 * 23 21 19 27 27 N 1.31207 * 125.97268 * 180.02562 * 13 12 10 28 28 H 1.09009 * 109.46753 * 60.00131 * 1 2 3 29 29 H 1.08997 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47611 * 300.00482 * 1 2 3 31 31 H 1.08999 * 109.47061 * 269.99649 * 6 5 3 32 32 H 1.09000 * 109.47129 * 30.00228 * 6 5 3 33 33 H 1.08997 * 109.46637 * 149.99795 * 6 5 3 34 34 H 1.09006 * 109.46638 * 150.00280 * 7 5 3 35 35 H 1.09002 * 109.47196 * 30.00810 * 7 5 3 36 36 H 1.08998 * 109.47186 * 60.00250 * 8 7 5 37 37 H 1.09002 * 109.47663 * 300.00533 * 8 7 5 38 38 H 0.97000 * 120.00069 * 0.02562 * 9 8 7 39 39 H 0.97000 * 120.00483 * 359.73178 * 12 10 9 40 40 H 1.08001 * 126.06561 * 359.97438 * 14 13 12 41 41 H 1.09000 * 109.46414 * 270.31468 * 16 15 14 42 42 H 1.08994 * 109.47042 * 30.31368 * 16 15 14 43 43 H 1.08993 * 109.47184 * 150.31712 * 16 15 14 44 44 H 1.09001 * 109.47222 * 29.99739 * 18 17 15 45 45 H 1.08997 * 109.47398 * 150.00005 * 18 17 15 46 46 H 0.97000 * 120.00157 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2070 0.0413 0.0005 7 6 4.0743 2.5754 0.0000 8 6 4.3065 3.0289 -1.4426 9 7 4.9710 4.3345 -1.4432 10 6 5.2778 4.9340 -2.6106 11 8 5.0026 4.3914 -3.6634 12 7 5.8942 6.1326 -2.6110 13 6 6.2185 6.7536 -3.8254 14 6 5.9660 6.2401 -5.1076 15 6 6.4239 7.1362 -6.0111 16 6 6.3581 6.9975 -7.5103 17 7 6.9556 8.1741 -5.3316 18 6 7.5712 9.3648 -5.9227 19 6 9.0455 9.1227 -6.1202 20 1 9.4803 8.1762 -5.8344 21 6 9.8391 10.1088 -6.6667 22 7 11.1257 9.8976 -6.8385 23 14 9.0869 11.7455 -7.1617 24 1 9.1426 12.6838 -6.0121 25 1 9.8478 12.3150 -8.3028 26 1 7.6725 11.5388 -7.5639 27 7 6.8162 7.9136 -3.9624 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.4046 -0.2636 1.0282 32 1 3.6587 -0.7479 -0.5137 33 1 5.1515 0.2214 -0.5129 34 1 5.0321 2.4953 0.5142 35 1 3.4461 3.3035 0.5132 36 1 3.3488 3.1089 -1.9569 37 1 4.9346 2.3008 -1.9559 38 1 5.1909 4.7671 -0.6033 39 1 6.1135 6.5655 -1.7712 40 1 5.4884 5.2979 -5.3324 41 1 7.2560 6.4937 -7.8682 42 1 5.4800 6.4123 -7.7828 43 1 6.2910 7.9863 -7.9640 44 1 7.1054 9.5748 -6.8856 45 1 7.4289 10.2160 -5.2570 46 1 11.6841 10.5916 -7.2227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822281017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:15 Heat of formation + Delta-G solvation = -41.563073 kcal Electronic energy + Delta-G solvation = -28456.894408 eV Core-core repulsion = 24190.475063 eV Total energy + Delta-G solvation = -4266.419345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.34584 -41.64875 -40.94884 -38.35055 -37.00765 -36.38387 -35.71108 -35.20363 -33.21837 -32.78801 -30.77944 -28.93511 -28.61907 -27.88901 -27.26818 -25.02242 -24.24665 -22.81361 -21.79532 -21.27527 -21.05459 -19.31350 -19.22083 -18.98309 -18.20182 -17.88497 -17.62992 -17.19155 -16.96650 -16.44475 -16.16670 -15.79219 -15.66011 -15.39595 -15.25916 -14.94968 -14.73641 -14.57050 -14.50016 -13.86680 -13.85801 -13.75103 -13.60936 -13.29745 -13.23437 -13.13037 -12.94744 -12.87334 -12.57567 -12.45406 -12.23153 -11.81952 -11.80888 -11.74757 -11.61104 -11.43583 -11.20981 -10.88719 -10.28801 -9.96815 -9.58097 -9.05041 -8.39229 -6.50152 0.85912 0.99836 1.24827 1.37185 1.38377 1.48184 1.63108 1.63803 2.06632 2.27633 2.36084 2.90066 2.93385 3.19969 3.76811 3.83374 3.92732 4.11600 4.28981 4.34009 4.35971 4.37173 4.40606 4.52978 4.64012 4.66459 4.73266 4.74897 4.80511 4.82597 4.87692 4.99089 5.00249 5.09569 5.16725 5.21266 5.24477 5.27364 5.43073 5.82691 5.89553 6.01840 6.13956 6.38187 6.53165 6.70134 7.09078 7.12158 7.13714 7.39043 8.77379 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.001721 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.972717 B =16268.714975 C =16463.666928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.370 6.370 3 C 0.639 3.361 4 O -0.605 6.605 5 N -0.591 5.591 6 C 0.077 3.923 7 C 0.127 3.873 8 C 0.129 3.871 9 N -0.716 5.716 10 C 0.712 3.288 11 O -0.602 6.602 12 N -0.633 5.633 13 C 0.294 3.706 14 C -0.299 4.299 15 C 0.090 3.910 16 C -0.084 4.084 17 N -0.343 5.343 18 C 0.241 3.759 19 C -0.550 4.550 20 H 0.024 0.976 21 C 0.022 3.978 22 N -0.937 5.937 23 Si 0.951 3.049 24 H -0.266 1.266 25 H -0.274 1.274 26 H -0.234 1.234 27 N -0.356 5.356 28 H 0.056 0.944 29 H 0.137 0.863 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.419 0.581 39 H 0.423 0.577 40 H 0.165 0.835 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.049 0.951 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.499 -19.828 15.571 31.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.283 6.283 3 C 0.393 3.607 4 O -0.496 6.496 5 N -0.331 5.331 6 C -0.065 4.065 7 C 0.005 3.995 8 C 0.003 3.997 9 N -0.374 5.374 10 C 0.412 3.588 11 O -0.480 6.480 12 N -0.286 5.286 13 C 0.039 3.961 14 C -0.330 4.330 15 C -0.040 4.040 16 C -0.142 4.142 17 N -0.125 5.125 18 C 0.121 3.879 19 C -0.588 4.588 20 H 0.042 0.958 21 C -0.178 4.178 22 N -0.575 5.575 23 Si 0.772 3.228 24 H -0.191 1.191 25 H -0.199 1.199 26 H -0.157 1.157 27 N -0.186 5.186 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.151 0.849 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.256 0.744 39 H 0.261 0.739 40 H 0.182 0.818 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.315 -18.960 15.172 30.415 hybrid contribution 0.118 0.524 0.166 0.562 sum -18.197 -18.435 15.338 30.104 Atomic orbital electron populations 1.23489 0.72966 1.05630 1.02411 1.86246 1.25572 1.29913 1.86564 1.18426 0.83946 0.82222 0.76063 1.91004 1.65268 1.36181 1.57182 1.46588 1.01787 1.09354 1.75405 1.22086 0.96298 0.84263 1.03806 1.21634 0.99929 0.83278 0.94679 1.21532 0.96627 0.82931 0.98603 1.44533 1.64332 1.21982 1.06544 1.15740 0.78284 0.79855 0.84967 1.90854 1.59905 1.65731 1.31468 1.41321 1.61379 1.19699 1.06166 1.18936 0.97766 0.92187 0.87252 1.21421 1.17515 1.04594 0.89459 1.21734 0.96140 0.88414 0.97700 1.20502 1.04277 1.04020 0.85395 1.48415 1.44583 1.17628 1.01919 1.19788 0.92142 0.81562 0.94389 1.21254 0.92390 1.01666 1.43505 0.95783 1.25820 0.94893 1.02830 0.94237 1.70031 1.06581 1.36228 1.44709 0.85679 0.80330 0.77996 0.78797 1.19075 1.19932 1.15731 1.77161 1.27345 1.17465 0.96639 0.92556 0.84529 0.91972 0.90406 0.90330 0.88728 0.84883 0.89190 0.93908 0.90892 0.74374 0.73876 0.81794 0.90331 0.87515 0.90338 0.90837 0.93334 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 10.56 113.37 1.20 1.71 16 2 O -0.37 -5.72 9.39 -55.39 -0.52 -6.24 16 3 C 0.64 12.25 8.40 129.79 1.09 13.34 16 4 O -0.61 -15.89 15.71 19.80 0.31 -15.58 16 5 N -0.59 -7.59 2.87 -977.25 -2.81 -10.40 16 6 C 0.08 0.47 10.44 127.77 1.33 1.81 16 7 C 0.13 1.34 5.52 86.38 0.48 1.81 16 8 C 0.13 2.17 6.00 86.38 0.52 2.69 16 9 N -0.72 -12.69 5.56 -478.55 -2.66 -15.35 16 10 C 0.71 20.49 8.53 179.05 1.53 22.02 16 11 O -0.60 -22.22 13.47 -4.01 -0.05 -22.28 16 12 N -0.63 -19.15 5.46 -321.23 -1.75 -20.90 16 13 C 0.29 12.02 8.11 133.31 1.08 13.10 16 14 C -0.30 -12.47 9.52 22.11 0.21 -12.26 16 15 C 0.09 3.78 6.93 41.39 0.29 4.06 16 16 C -0.08 -2.75 10.11 71.24 0.72 -2.03 16 17 N -0.34 -16.16 3.59 -338.44 -1.22 -17.38 16 18 C 0.24 11.57 5.06 85.63 0.43 12.01 16 19 C -0.55 -31.72 9.94 25.60 0.25 -31.47 16 20 H 0.02 1.61 8.06 -2.91 -0.02 1.59 16 21 C 0.02 1.23 5.47 84.66 0.46 1.70 16 22 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 23 Si 0.95 40.94 27.47 68.60 1.88 42.83 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.23 -8.92 6.54 99.48 0.65 -8.27 16 27 N -0.36 -16.44 12.59 -54.43 -0.69 -17.13 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.08 0.54 7.38 -2.39 -0.02 0.52 16 33 H 0.09 0.31 8.07 -2.39 -0.02 0.29 16 34 H 0.13 0.42 8.07 -2.38 -0.02 0.41 16 35 H 0.09 1.13 7.42 -2.39 -0.02 1.11 16 36 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.42 4.12 8.49 -92.71 -0.79 3.33 16 39 H 0.42 9.69 8.84 -92.71 -0.82 8.87 16 40 H 0.16 6.75 5.91 -2.91 -0.02 6.74 16 41 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.08 2.43 7.07 -2.39 -0.02 2.41 16 44 H 0.07 3.16 6.10 -2.39 -0.01 3.14 16 45 H 0.05 2.28 7.57 -2.39 -0.02 2.26 16 46 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -87.20 391.81 1.76 -85.44 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.63 Total: 25.29 kcal Atomic # 6 Polarization: 18.90 SS G_CDS: 9.59 Total: 28.49 kcal Atomic # 7 Polarization: -129.13 SS G_CDS: -8.82 Total: -137.95 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.26 Total: -44.09 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.88 Total: 42.83 kcal Total: -87.20 1.76 -85.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822281017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.875 kcal (2) G-P(sol) polarization free energy of solvation -87.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds