Wall clock time and date at job start Tue Mar 31 2020 23:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41602 * 114.00182 * 2 1 4 4 C 1.46505 * 119.99804 * 270.00146 * 3 2 1 5 5 C 1.34777 * 119.99920 * 89.99558 * 3 2 1 6 6 O 1.21279 * 119.99418 * 180.02562 * 5 3 2 7 7 C 1.50695 * 119.99953 * 0.02562 * 5 3 2 8 8 H 1.08999 * 109.47314 * 299.99780 * 7 5 3 9 9 C 1.53000 * 109.47284 * 60.00109 * 7 5 3 10 10 N 1.46509 * 109.46713 * 179.97438 * 7 5 3 11 11 C 1.34777 * 119.99703 * 155.00194 * 10 7 5 12 12 O 1.21589 * 120.00263 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99754 * 179.97438 * 11 10 7 14 14 C 1.40193 * 119.99728 * 179.97438 * 13 11 10 15 15 C 1.40401 * 125.97600 * 0.02562 * 14 13 11 16 16 C 1.35244 * 107.86868 * 179.97438 * 15 14 13 17 17 C 1.50696 * 126.07048 * 179.97438 * 16 15 14 18 18 N 1.34965 * 107.85999 * 359.97438 * 16 15 14 19 19 C 1.46493 * 125.97624 * 179.97438 * 18 16 15 20 20 C 1.50690 * 109.47472 * 270.02686 * 19 18 16 21 21 H 1.07996 * 120.00250 * 0.02562 * 20 19 18 22 22 C 1.37883 * 120.00028 * 179.97438 * 20 19 18 23 23 N 1.31507 * 120.00019 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99839 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46707 * 90.00476 * 24 22 20 26 26 H 1.48497 * 109.46868 * 210.00037 * 24 22 20 27 27 H 1.48495 * 109.47424 * 330.00516 * 24 22 20 28 28 N 1.31214 * 125.96986 * 179.97438 * 14 13 11 29 29 H 1.09002 * 109.47545 * 60.00095 * 1 2 3 30 30 H 1.09009 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47575 * 299.99799 * 1 2 3 32 32 H 1.08995 * 109.46773 * 269.99595 * 4 3 2 33 33 H 1.08997 * 109.46961 * 29.99798 * 4 3 2 34 34 H 1.08997 * 109.46745 * 149.99542 * 4 3 2 35 35 H 1.09000 * 109.47091 * 179.97438 * 9 7 5 36 36 H 1.08998 * 109.46903 * 299.99640 * 9 7 5 37 37 H 1.08999 * 109.47214 * 59.99610 * 9 7 5 38 38 H 0.96999 * 119.99737 * 334.99850 * 10 7 5 39 39 H 0.96999 * 119.99686 * 0.02562 * 13 11 10 40 40 H 1.07998 * 126.06449 * 0.02562 * 15 14 13 41 41 H 1.09005 * 109.47188 * 90.02621 * 17 16 15 42 42 H 1.08997 * 109.47424 * 210.02502 * 17 16 15 43 43 H 1.09004 * 109.47111 * 330.02462 * 17 16 15 44 44 H 1.09003 * 109.47262 * 30.03261 * 19 18 16 45 45 H 1.09012 * 109.47086 * 150.02761 * 19 18 16 46 46 H 0.97001 * 119.99800 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3028 1.9627 -1.2688 5 6 2.2789 1.9092 1.1672 6 8 2.7718 3.0173 1.1671 7 6 1.9729 1.2207 2.4723 8 1 0.9051 1.0098 2.5302 9 6 2.7568 -0.0907 2.5531 10 7 2.3606 2.0903 3.5858 11 6 1.7614 1.9563 4.7856 12 8 0.8989 1.1140 4.9438 13 7 2.1184 2.7559 5.8101 14 6 1.4948 2.6168 7.0580 15 6 0.4890 1.6912 7.3788 16 6 0.1540 1.8755 8.6761 17 6 -0.8857 1.0995 9.4428 18 7 0.9161 2.8777 9.1621 19 6 0.8775 3.4032 10.5290 20 6 -0.1260 4.5246 10.6080 21 1 -0.6799 4.8166 9.7280 22 6 -0.3377 5.1774 11.8039 23 7 0.3364 4.8216 12.8755 24 14 -1.5811 6.5681 11.9015 25 1 -2.9144 6.0162 12.2521 26 1 -1.1576 7.5384 12.9428 27 1 -1.6597 7.2551 10.5874 28 7 1.7498 3.3284 8.1306 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.3155 1.7107 -1.5834 33 1 1.5938 1.6335 -2.0284 34 1 2.2208 3.0418 -1.1384 35 1 2.5358 -0.5885 3.4973 36 1 2.4688 -0.7379 1.7247 37 1 3.8247 0.1201 2.4952 38 1 3.0484 2.7624 3.4595 39 1 2.8062 3.4280 5.6838 40 1 0.0597 0.9611 6.7088 41 1 -0.4202 0.2315 9.9098 42 1 -1.3203 1.7369 10.2128 43 1 -1.6688 0.7688 8.7604 44 1 0.5883 2.6078 11.2160 45 1 1.8639 3.7783 10.8021 46 1 0.1878 5.2811 13.7168 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860853527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:35 Heat of formation + Delta-G solvation = 33.573446 kcal Electronic energy + Delta-G solvation = -29293.518790 eV Core-core repulsion = 25030.357609 eV Total energy + Delta-G solvation = -4263.161181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98964 -40.48008 -39.41473 -37.92732 -35.53663 -34.62870 -33.56909 -33.37052 -31.68522 -31.00237 -30.33917 -27.91042 -26.88890 -26.61207 -26.28547 -24.37749 -22.95339 -21.61306 -20.71667 -20.05585 -19.59384 -18.57967 -17.60183 -17.09930 -16.69409 -16.65728 -16.22870 -15.70408 -15.45532 -15.19083 -14.91894 -14.86703 -14.63313 -14.26160 -14.05859 -13.87135 -13.66061 -13.21481 -12.98893 -12.86874 -12.62760 -12.45467 -12.33362 -12.28507 -12.17925 -11.95318 -11.63652 -11.38529 -11.09217 -11.06155 -10.82238 -10.42427 -10.33153 -10.23629 -10.00850 -9.65107 -9.63079 -9.51896 -9.32896 -8.62458 -7.88339 -7.37878 -6.23320 -4.30853 1.26893 1.91332 2.32394 2.65631 3.09028 3.22689 3.29140 3.32216 3.36136 3.63599 3.85843 4.25823 4.34894 4.42273 4.66490 4.70611 4.73643 4.79632 4.82907 4.94560 5.10123 5.11347 5.21063 5.40298 5.48308 5.52427 5.73866 5.75299 5.96511 5.97332 6.12321 6.16203 6.23867 6.51635 6.59403 6.66389 6.77619 6.98029 7.07570 7.15957 7.41359 7.54821 7.69686 7.91487 7.95811 8.10444 8.57254 8.70575 8.78859 9.35399 10.83763 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.002067 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.873415 B =13539.870943 C =13867.354973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 O -0.138 6.138 3 N -0.479 5.479 4 C 0.086 3.914 5 C 0.523 3.477 6 O -0.515 6.515 7 C 0.154 3.846 8 H 0.115 0.885 9 C -0.161 4.161 10 N -0.732 5.732 11 C 0.719 3.281 12 O -0.567 6.567 13 N -0.641 5.641 14 C 0.282 3.718 15 C -0.288 4.288 16 C 0.091 3.909 17 C -0.088 4.088 18 N -0.318 5.318 19 C 0.259 3.741 20 C -0.535 4.535 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.272 1.272 28 N -0.323 5.323 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.406 0.594 39 H 0.408 0.592 40 H 0.160 0.840 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 -11.203 -26.468 28.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 O -0.142 6.142 3 N -0.259 5.259 4 C -0.054 4.054 5 C 0.312 3.688 6 O -0.390 6.390 7 C 0.045 3.955 8 H 0.133 0.867 9 C -0.220 4.220 10 N -0.390 5.390 11 C 0.418 3.582 12 O -0.442 6.442 13 N -0.291 5.291 14 C 0.029 3.971 15 C -0.320 4.320 16 C -0.041 4.041 17 C -0.146 4.146 18 N -0.101 5.101 19 C 0.141 3.859 20 C -0.574 4.574 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.197 1.197 28 N -0.153 5.153 29 H 0.074 0.926 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.242 0.758 39 H 0.243 0.757 40 H 0.178 0.822 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.483 -10.505 -25.528 27.716 hybrid contribution -0.711 0.934 -0.445 1.256 sum 1.771 -9.571 -25.973 27.737 Atomic orbital electron populations 1.23498 0.81090 1.04577 1.01838 1.90664 1.20558 1.06245 1.96706 1.49870 1.58909 1.10514 1.06589 1.21945 1.01900 0.98086 0.83488 1.20899 0.77735 0.85138 0.85050 1.90770 1.43834 1.18574 1.85852 1.20474 1.02479 0.90167 0.82388 0.86712 1.22224 1.00043 0.95219 1.04465 1.44753 1.44409 1.40995 1.08870 1.15462 0.81503 0.81518 0.79677 1.90862 1.33935 1.37304 1.82131 1.41325 1.41899 1.38413 1.07421 1.18647 0.96021 0.97212 0.85248 1.21224 1.06363 1.08600 0.95769 1.21054 0.96153 0.92675 0.94205 1.20367 0.95601 0.98803 0.99861 1.48969 1.26128 1.24532 1.10432 1.19672 0.99584 0.95270 0.71366 1.21335 1.22538 1.17269 0.96249 0.91754 1.24931 0.96374 0.97363 0.95154 1.69919 1.40800 1.41671 1.00581 0.86360 0.80926 0.81403 0.78033 1.20312 1.20897 1.19710 1.77262 1.19341 1.23611 0.95095 0.92569 0.86881 0.92323 0.91283 0.90296 0.89254 0.90406 0.89694 0.92087 0.75769 0.75729 0.82218 0.91125 0.89963 0.90668 0.92810 0.93021 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 11.44 101.05 1.16 1.10 16 2 O -0.14 -0.91 8.79 -11.47 -0.10 -1.01 16 3 N -0.48 -3.69 3.34 -67.08 -0.22 -3.91 16 4 C 0.09 0.46 10.82 59.85 0.65 1.11 16 5 C 0.52 5.19 7.17 -10.99 -0.08 5.11 16 6 O -0.52 -6.33 15.42 5.56 0.09 -6.25 16 7 C 0.15 1.56 2.58 -69.08 -0.18 1.38 16 8 H 0.12 1.20 6.56 -51.93 -0.34 0.86 16 9 C -0.16 -1.43 9.33 37.16 0.35 -1.08 16 10 N -0.73 -8.54 4.96 -59.81 -0.30 -8.84 16 11 C 0.72 10.97 8.50 -86.92 -0.74 10.24 16 12 O -0.57 -10.07 13.13 5.29 0.07 -10.00 16 13 N -0.64 -10.45 5.46 -15.51 -0.08 -10.54 16 14 C 0.28 5.88 8.11 -154.36 -1.25 4.63 16 15 C -0.29 -6.01 9.52 -39.83 -0.38 -6.39 16 16 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 17 C -0.09 -1.52 9.89 36.00 0.36 -1.16 16 18 N -0.32 -7.65 3.59 -58.33 -0.21 -7.86 16 19 C 0.26 6.70 5.81 -5.20 -0.03 6.67 16 20 C -0.54 -14.87 9.39 -34.44 -0.32 -15.19 16 21 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -25.19 13.29 55.43 0.74 -24.46 16 24 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 N -0.32 -7.59 12.59 31.44 0.40 -7.20 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.11 0.29 8.14 -51.92 -0.42 -0.14 16 31 H 0.06 0.31 7.13 -51.93 -0.37 -0.06 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.54 7.42 -51.93 -0.39 0.15 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.65 6.03 -51.93 -0.31 0.33 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.41 4.23 7.80 -40.82 -0.32 3.91 16 39 H 0.41 5.51 8.84 -40.82 -0.36 5.15 16 40 H 0.16 3.23 5.91 -52.49 -0.31 2.92 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 1.37 7.65 -51.93 -0.40 0.98 16 45 H 0.05 1.43 8.14 -51.92 -0.42 1.00 16 46 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -34.39 390.80 -6.45 -40.84 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.55 Total: 7.62 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -1.14 Total: 9.46 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.32 Total: -62.80 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.05 Total: -17.26 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.39 -6.45 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860853527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.409 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds