Wall clock time and date at job start Tue Mar 31 2020 23:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41602 * 114.00182 * 2 1 4 4 C 1.46505 * 119.99804 * 270.00146 * 3 2 1 5 5 C 1.34777 * 119.99920 * 89.99558 * 3 2 1 6 6 O 1.21279 * 119.99418 * 180.02562 * 5 3 2 7 7 C 1.50695 * 119.99953 * 0.02562 * 5 3 2 8 8 H 1.08999 * 109.47314 * 299.99780 * 7 5 3 9 9 C 1.53000 * 109.47284 * 60.00109 * 7 5 3 10 10 N 1.46509 * 109.46713 * 179.97438 * 7 5 3 11 11 C 1.34777 * 119.99703 * 155.00194 * 10 7 5 12 12 O 1.21589 * 120.00263 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99754 * 179.97438 * 11 10 7 14 14 C 1.40193 * 119.99728 * 179.97438 * 13 11 10 15 15 C 1.40401 * 125.97600 * 0.02562 * 14 13 11 16 16 C 1.35244 * 107.86868 * 179.97438 * 15 14 13 17 17 C 1.50696 * 126.07048 * 179.97438 * 16 15 14 18 18 N 1.34965 * 107.85999 * 359.97438 * 16 15 14 19 19 C 1.46493 * 125.97624 * 179.97438 * 18 16 15 20 20 C 1.50690 * 109.47472 * 270.02686 * 19 18 16 21 21 H 1.07996 * 120.00250 * 0.02562 * 20 19 18 22 22 C 1.37883 * 120.00028 * 179.97438 * 20 19 18 23 23 N 1.31507 * 120.00019 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99839 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46707 * 90.00476 * 24 22 20 26 26 H 1.48497 * 109.46868 * 210.00037 * 24 22 20 27 27 H 1.48495 * 109.47424 * 330.00516 * 24 22 20 28 28 N 1.31214 * 125.96986 * 179.97438 * 14 13 11 29 29 H 1.09002 * 109.47545 * 60.00095 * 1 2 3 30 30 H 1.09009 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47575 * 299.99799 * 1 2 3 32 32 H 1.08995 * 109.46773 * 269.99595 * 4 3 2 33 33 H 1.08997 * 109.46961 * 29.99798 * 4 3 2 34 34 H 1.08997 * 109.46745 * 149.99542 * 4 3 2 35 35 H 1.09000 * 109.47091 * 179.97438 * 9 7 5 36 36 H 1.08998 * 109.46903 * 299.99640 * 9 7 5 37 37 H 1.08999 * 109.47214 * 59.99610 * 9 7 5 38 38 H 0.96999 * 119.99737 * 334.99850 * 10 7 5 39 39 H 0.96999 * 119.99686 * 0.02562 * 13 11 10 40 40 H 1.07998 * 126.06449 * 0.02562 * 15 14 13 41 41 H 1.09005 * 109.47188 * 90.02621 * 17 16 15 42 42 H 1.08997 * 109.47424 * 210.02502 * 17 16 15 43 43 H 1.09004 * 109.47111 * 330.02462 * 17 16 15 44 44 H 1.09003 * 109.47262 * 30.03261 * 19 18 16 45 45 H 1.09012 * 109.47086 * 150.02761 * 19 18 16 46 46 H 0.97001 * 119.99800 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3028 1.9627 -1.2688 5 6 2.2789 1.9092 1.1672 6 8 2.7718 3.0173 1.1671 7 6 1.9729 1.2207 2.4723 8 1 0.9051 1.0098 2.5302 9 6 2.7568 -0.0907 2.5531 10 7 2.3606 2.0903 3.5858 11 6 1.7614 1.9563 4.7856 12 8 0.8989 1.1140 4.9438 13 7 2.1184 2.7559 5.8101 14 6 1.4948 2.6168 7.0580 15 6 0.4890 1.6912 7.3788 16 6 0.1540 1.8755 8.6761 17 6 -0.8857 1.0995 9.4428 18 7 0.9161 2.8777 9.1621 19 6 0.8775 3.4032 10.5290 20 6 -0.1260 4.5246 10.6080 21 1 -0.6799 4.8166 9.7280 22 6 -0.3377 5.1774 11.8039 23 7 0.3364 4.8216 12.8755 24 14 -1.5811 6.5681 11.9015 25 1 -2.9144 6.0162 12.2521 26 1 -1.1576 7.5384 12.9428 27 1 -1.6597 7.2551 10.5874 28 7 1.7498 3.3284 8.1306 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.3155 1.7107 -1.5834 33 1 1.5938 1.6335 -2.0284 34 1 2.2208 3.0418 -1.1384 35 1 2.5358 -0.5885 3.4973 36 1 2.4688 -0.7379 1.7247 37 1 3.8247 0.1201 2.4952 38 1 3.0484 2.7624 3.4595 39 1 2.8062 3.4280 5.6838 40 1 0.0597 0.9611 6.7088 41 1 -0.4202 0.2315 9.9098 42 1 -1.3203 1.7369 10.2128 43 1 -1.6688 0.7688 8.7604 44 1 0.5883 2.6078 11.2160 45 1 1.8639 3.7783 10.8021 46 1 0.1878 5.2811 13.7168 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860853527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:34 Heat of formation + Delta-G solvation = 9.499353 kcal Electronic energy + Delta-G solvation = -29294.562721 eV Core-core repulsion = 25030.357609 eV Total energy + Delta-G solvation = -4264.205112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.35454 -41.59978 -40.59215 -38.53760 -36.71373 -35.98955 -35.31269 -34.14808 -33.19552 -32.63254 -31.57905 -28.54698 -28.35107 -27.83971 -27.41219 -25.48776 -24.63674 -22.85413 -21.54783 -21.36057 -21.11418 -19.73552 -18.79359 -18.47758 -17.99089 -17.61088 -17.29343 -17.05037 -16.79309 -16.27425 -16.12590 -16.09359 -15.64672 -15.52989 -15.31979 -14.85650 -14.64334 -14.34914 -14.23086 -13.78754 -13.74222 -13.65025 -13.56037 -13.49590 -13.28962 -13.13138 -12.89253 -12.81648 -12.66841 -12.65895 -12.25201 -12.10760 -11.65773 -11.55764 -11.35369 -11.17734 -11.06453 -10.72466 -10.41168 -10.20693 -9.55569 -9.08218 -8.31730 -6.49425 0.66914 1.01379 1.07796 1.19566 1.37941 1.39089 1.50515 1.64398 2.03204 2.34222 2.36231 2.68040 2.97490 3.05151 3.81178 3.88345 3.97165 4.03106 4.17456 4.33838 4.38417 4.42749 4.49162 4.53932 4.68151 4.73684 4.78405 4.79950 4.80990 4.83063 4.88653 4.98574 5.02859 5.11952 5.15609 5.20869 5.25977 5.35300 5.54742 5.78492 5.82665 5.97041 6.16120 6.29125 6.61664 6.66835 6.73059 7.10503 7.21433 7.32848 8.73905 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.002067 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.873415 B =13539.870943 C =13867.354973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.142 6.142 3 N -0.475 5.475 4 C 0.081 3.919 5 C 0.524 3.476 6 O -0.545 6.545 7 C 0.151 3.849 8 H 0.113 0.887 9 C -0.152 4.152 10 N -0.716 5.716 11 C 0.721 3.279 12 O -0.590 6.590 13 N -0.636 5.636 14 C 0.292 3.708 15 C -0.295 4.295 16 C 0.087 3.913 17 C -0.085 4.085 18 N -0.343 5.343 19 C 0.276 3.724 20 C -0.553 4.553 21 H 0.048 0.952 22 C 0.023 3.977 23 N -0.917 5.917 24 Si 0.971 3.029 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.277 1.277 28 N -0.361 5.361 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.414 0.586 39 H 0.420 0.580 40 H 0.170 0.830 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.053 0.947 45 H 0.024 0.976 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -11.961 -28.301 30.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 O -0.146 6.146 3 N -0.254 5.254 4 C -0.058 4.058 5 C 0.312 3.688 6 O -0.423 6.423 7 C 0.042 3.958 8 H 0.131 0.869 9 C -0.210 4.210 10 N -0.374 5.374 11 C 0.420 3.580 12 O -0.467 6.467 13 N -0.287 5.287 14 C 0.037 3.963 15 C -0.326 4.326 16 C -0.043 4.043 17 C -0.143 4.143 18 N -0.126 5.126 19 C 0.157 3.843 20 C -0.591 4.591 21 H 0.067 0.933 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.795 3.205 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.202 1.202 28 N -0.192 5.192 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.251 0.749 39 H 0.257 0.743 40 H 0.187 0.813 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.500 -11.292 -27.433 29.704 hybrid contribution -0.386 1.061 -0.044 1.129 sum 1.114 -10.231 -27.477 29.341 Atomic orbital electron populations 1.23692 0.79727 1.06079 1.01951 1.90652 1.21926 1.05312 1.96739 1.49867 1.58098 1.10795 1.06599 1.22135 1.03191 0.97555 0.82897 1.20732 0.77707 0.84807 0.85507 1.90759 1.45438 1.19708 1.86374 1.20639 1.02606 0.90434 0.82074 0.86930 1.22147 1.00051 0.94489 1.04321 1.44665 1.43731 1.41021 1.08013 1.15521 0.81341 0.80981 0.80146 1.90832 1.35059 1.38222 1.82630 1.41333 1.42013 1.39072 1.06268 1.18927 0.95418 0.96049 0.85955 1.21406 1.06558 1.08889 0.95717 1.21762 0.95995 0.91769 0.94759 1.20498 0.95339 0.98689 0.99761 1.48770 1.27747 1.26014 1.10064 1.19235 0.97530 0.94764 0.72792 1.21436 1.23183 1.18407 0.96049 0.93327 1.25730 0.98025 0.99506 0.94594 1.69999 1.41780 1.42679 1.01102 0.85363 0.79012 0.78361 0.77792 1.18839 1.19918 1.20219 1.77181 1.20688 1.25377 0.95935 0.91327 0.84660 0.93318 0.90459 0.87823 0.90013 0.91742 0.88182 0.91693 0.74858 0.74268 0.81285 0.88852 0.91488 0.87862 0.92913 0.95818 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.12 11.44 113.37 1.30 1.18 16 2 O -0.14 -1.57 8.79 -38.79 -0.34 -1.91 16 3 N -0.48 -6.49 3.34 -484.53 -1.62 -8.11 16 4 C 0.08 0.72 10.82 127.77 1.38 2.10 16 5 C 0.52 9.81 7.17 87.66 0.63 10.44 16 6 O -0.54 -13.02 15.42 -3.03 -0.05 -13.07 16 7 C 0.15 2.89 2.58 44.24 0.11 3.01 16 8 H 0.11 2.25 6.56 -2.39 -0.02 2.23 16 9 C -0.15 -2.48 9.33 71.98 0.67 -1.81 16 10 N -0.72 -16.13 4.96 -461.40 -2.29 -18.42 16 11 C 0.72 21.51 8.50 179.05 1.52 23.03 16 12 O -0.59 -20.50 13.13 -4.00 -0.05 -20.55 16 13 N -0.64 -20.54 5.46 -321.23 -1.75 -22.29 16 14 C 0.29 12.20 8.11 133.31 1.08 13.28 16 15 C -0.29 -12.19 9.52 22.11 0.21 -11.98 16 16 C 0.09 3.73 6.92 41.38 0.29 4.01 16 17 C -0.08 -2.83 9.89 71.23 0.70 -2.13 16 18 N -0.34 -16.91 3.59 -338.46 -1.22 -18.12 16 19 C 0.28 14.77 5.81 85.63 0.50 15.27 16 20 C -0.55 -31.35 9.39 25.60 0.24 -31.11 16 21 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 22 C 0.02 1.24 5.46 84.66 0.46 1.70 16 23 N -0.92 -52.18 13.29 21.45 0.28 -51.90 16 24 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 28 N -0.36 -17.40 12.59 -54.43 -0.69 -18.08 16 29 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.14 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.05 0.44 7.13 -2.39 -0.02 0.42 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 0.89 7.42 -2.39 -0.02 0.87 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.33 6.03 -2.39 -0.01 1.32 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.41 8.28 7.80 -92.71 -0.72 7.56 16 39 H 0.42 11.24 8.84 -92.71 -0.82 10.42 16 40 H 0.17 6.68 5.91 -2.91 -0.02 6.66 16 41 H 0.09 2.68 8.14 -2.38 -0.02 2.67 16 42 H 0.07 2.45 7.71 -2.39 -0.02 2.43 16 43 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 44 H 0.05 2.78 7.65 -2.39 -0.02 2.77 16 45 H 0.02 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -74.43 390.80 2.90 -71.53 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -0.51 Total: 28.39 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 9.10 Total: 27.00 kcal Atomic # 7 Polarization: -129.66 SS G_CDS: -7.27 Total: -136.93 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.44 Total: -35.53 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.43 2.90 -71.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860853527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.033 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds